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1OQD
Asym. Unit
Info
Asym.Unit (285 KB)
Biol.Unit 1, α-C (1.6 MB)
Biol.Unit 1 (1.6 MB)
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(1)
Title
:
CRYSTAL STRUCTURE OF STALL-1 AND BCMA
Authors
:
G. Zhang
Date
:
07 Mar 03 (Deposition) - 13 May 03 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R (6x)
Keywords
:
Ligand Receptor Complex, Immune Response
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Liu, X. Hong, J. Kappler, L. Jiang, R. Zhang, L. Xu, C. H. Pan, W. E. Martin, R. C. Murphy, H. B. Shu, S. Dai, G. Zhang
Ligand-Receptor Binding Revealed By The Tnf Family Member Tall-1.
Nature V. 423 49 2003
(for further references see the
PDB file header
)
[
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]
Hetero Components
(0, 0)
Info
All Hetero Components
View:
Select:
Label:
Sorry, no Info available
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]
Sites
(0, 0)
Info
All Sites
View:
Select:
Label:
Sorry, no Info available
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 10)
Info
All PROSITE Patterns/Profiles
1: TNF_2 (A:7-143,B:7-143,C:7-143,D:7-143,E:...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TNF_2
PS50049
TNF family profile.
TN13B_HUMAN
148-284
10
A:7-143
B:7-143
C:7-143
D:7-143
E:7-143
F:7-143
G:7-143
H:7-143
I:7-143
J:7-143
[
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]
Exons
(7, 65)
Info
All Exons
Exon 1.1 (K:1-37 | L:1-37 | M:1-37 | N:1-21 ...)
Exon 1.2 (K:37-39 | L:37-39 | M:37-39 | - | ...)
Exon 2.2e (A:1-1 | B:1-1 | C:1-1 | D:1-1 | E:...)
Exon 2.3 (A:1-20 | B:1-20 | C:1-20 | D:1-20 ...)
Exon 2.5a (A:20-57 | B:20-57 | C:20-57 | D:20...)
Exon 2.5c (A:58-108 | B:58-108 | C:58-108 | D...)
Exon 2.6c (A:108-144 | B:108-144 | C:108-144 ...)
View:
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/1.2
3: Boundary 1.2/1.4
4: Boundary 2.2b/2.2e
5: Boundary 2.2e/2.3
6: Boundary 2.3/2.5a
7: Boundary 2.5a/2.5c
8: Boundary 2.5c/2.6c
9: Boundary 2.6c/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000053243
1
ENSE00000829755
chr16:
12058964-12059311
348
TNR17_HUMAN
1-44
44
8
K:1-37
L:1-37
M:1-37
N:1-21
O:1-37
P:1-37
Q:1-37
R:1-37
37
37
37
21
37
37
37
37
1.2
ENST00000053243
2
ENSE00000668477
chr16:
12060052-12060198
147
TNR17_HUMAN
44-93
50
7
K:37-39
L:37-39
M:37-39
-
O:37-39
P:37-39
Q:37-39
R:37-39
3
3
3
-
3
3
3
3
1.4
ENST00000053243
4
ENSE00001722330
chr16:
12061427-12061925
499
TNR17_HUMAN
93-184
92
0
-
-
2.2b
ENST00000375887
2b
ENSE00001811977
chr13:
108922066-108922582
517
TN13B_HUMAN
1-113
113
0
-
-
2.2e
ENST00000375887
2e
ENSE00000686291
chr13:
108922688-108922772
85
TN13B_HUMAN
114-142
29
10
A:1-1
B:1-1
C:1-1
D:1-1
E:1-1
F:1-1
G:1-1
H:1-1
I:1-1
J:1-1
1
1
1
1
1
1
1
1
1
1
2.3
ENST00000375887
3
ENSE00000854068
chr13:
108939151-108939207
57
TN13B_HUMAN
142-161
20
10
A:1-20
B:1-20
C:1-20
D:1-20
E:1-20
F:1-20
G:1-20
H:1-20
I:1-20
J:1-20
20
20
20
20
20
20
20
20
20
20
2.5a
ENST00000375887
5a
ENSE00000854071
chr13:
108955601-108955713
113
TN13B_HUMAN
161-198
38
10
A:20-57
B:20-57
C:20-57
D:20-57
E:20-57
F:20-57
G:20-57
H:20-57
I:20-57
J:20-57
38
38
38
38
38
38
38
38
38
38
2.5c
ENST00000375887
5c
ENSE00000854073
chr13:
108955802-108955952
151
TN13B_HUMAN
199-249
51
10
A:58-108
B:58-108
C:58-108
D:58-108
E:58-108
F:58-108
G:58-108
H:58-108
I:58-108
J:58-108
51
51
51
51
51
51
51
51
51
51
2.6c
ENST00000375887
6c
ENSE00001925016
chr13:
108959174-108959385
212
TN13B_HUMAN
249-285
37
10
A:108-144
B:108-144
C:108-144
D:108-144
E:108-144
F:108-144
G:108-144
H:108-144
I:108-144
J:108-144
37
37
37
37
37
37
37
37
37
37
[
close EXON info
]
SCOP Domains
(2, 18)
Info
All SCOP Domains
1a: SCOP_d1oqda_ (A:)
1b: SCOP_d1oqdb_ (B:)
1c: SCOP_d1oqdc_ (C:)
1d: SCOP_d1oqdd_ (D:)
1e: SCOP_d1oqde_ (E:)
1f: SCOP_d1oqdf_ (F:)
1g: SCOP_d1oqdg_ (G:)
1h: SCOP_d1oqdh_ (H:)
1i: SCOP_d1oqdi_ (I:)
1j: SCOP_d1oqdj_ (J:)
2a: SCOP_d1oqdk_ (K:)
2b: SCOP_d1oqdr_ (R:)
2c: SCOP_d1oqdl_ (L:)
2d: SCOP_d1oqdm_ (M:)
2e: SCOP_d1oqdn_ (N:)
2f: SCOP_d1oqdo_ (O:)
2g: SCOP_d1oqdp_ (P:)
2h: SCOP_d1oqdq_ (Q:)
View:
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)
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)
Folds
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(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
TNF-like
(100)
Superfamily
:
TNF-like
(100)
Family
:
TNF-like
(82)
Protein domain
:
Soluble part of TALL-1, sTALL-1 (BAFF)
(6)
Human (Homo sapiens) [TaxId: 9606]
(6)
1a
d1oqda_
A:
1b
d1oqdb_
B:
1c
d1oqdc_
C:
1d
d1oqdd_
D:
1e
d1oqde_
E:
1f
d1oqdf_
F:
1g
d1oqdg_
G:
1h
d1oqdh_
H:
1i
d1oqdi_
I:
1j
d1oqdj_
J:
Class
:
Small proteins
(3458)
Fold
:
TNF receptor-like
(25)
Superfamily
:
TNF receptor-like
(25)
Family
:
BAFF receptor-like
(7)
Protein domain
:
Tumor necrosis factor receptor superfamily member 17, BCMA
(2)
Human (Homo sapiens) [TaxId: 9606]
(2)
2a
d1oqdk_
K:
2b
d1oqdr_
R:
2c
d1oqdl_
L:
2d
d1oqdm_
M:
2e
d1oqdn_
N:
2f
d1oqdo_
O:
2g
d1oqdp_
P:
2h
d1oqdq_
Q:
[
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]
CATH Domains
(1, 10)
Info
all CATH domains
1a: CATH_1oqdA00 (A:1-144)
1b: CATH_1oqdF00 (F:1-144)
1c: CATH_1oqdG00 (G:1-144)
1d: CATH_1oqdH00 (H:1-144)
1e: CATH_1oqdI00 (I:1-144)
1f: CATH_1oqdJ00 (J:1-144)
1g: CATH_1oqdB00 (B:1-144)
1h: CATH_1oqdC00 (C:1-144)
1i: CATH_1oqdD00 (D:1-144)
1j: CATH_1oqdE00 (E:1-144)
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)
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)
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(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Jelly Rolls
(1293)
Homologous Superfamily
:
[code=2.60.120.40, no name defined]
(56)
Human (Homo sapiens)
(38)
1a
1oqdA00
A:1-144
1b
1oqdF00
F:1-144
1c
1oqdG00
G:1-144
1d
1oqdH00
H:1-144
1e
1oqdI00
I:1-144
1f
1oqdJ00
J:1-144
1g
1oqdB00
B:1-144
1h
1oqdC00
C:1-144
1i
1oqdD00
D:1-144
1j
1oqdE00
E:1-144
[
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]
Pfam Domains
(2, 18)
Info
all PFAM domains
1a: PFAM_TNF_1oqdJ01 (J:27-143)
1b: PFAM_TNF_1oqdJ02 (J:27-143)
1c: PFAM_TNF_1oqdJ03 (J:27-143)
1d: PFAM_TNF_1oqdJ04 (J:27-143)
1e: PFAM_TNF_1oqdJ05 (J:27-143)
1f: PFAM_TNF_1oqdJ06 (J:27-143)
1g: PFAM_TNF_1oqdJ07 (J:27-143)
1h: PFAM_TNF_1oqdJ08 (J:27-143)
1i: PFAM_TNF_1oqdJ09 (J:27-143)
1j: PFAM_TNF_1oqdJ10 (J:27-143)
2a: PFAM_BCMA_Tall_bind_1oqdR01 (R:1-39)
2b: PFAM_BCMA_Tall_bind_1oqdR02 (R:1-39)
2c: PFAM_BCMA_Tall_bind_1oqdR03 (R:1-39)
2d: PFAM_BCMA_Tall_bind_1oqdR04 (R:1-39)
2e: PFAM_BCMA_Tall_bind_1oqdR05 (R:1-39)
2f: PFAM_BCMA_Tall_bind_1oqdR06 (R:1-39)
2g: PFAM_BCMA_Tall_bind_1oqdR07 (R:1-39)
2h: PFAM_BCMA_Tall_bind_1oqdR08 (R:1-39)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
C1q_TNF
(45)
Family
:
TNF
(37)
Homo sapiens (Human)
(26)
1a
TNF-1oqdJ01
J:27-143
1b
TNF-1oqdJ02
J:27-143
1c
TNF-1oqdJ03
J:27-143
1d
TNF-1oqdJ04
J:27-143
1e
TNF-1oqdJ05
J:27-143
1f
TNF-1oqdJ06
J:27-143
1g
TNF-1oqdJ07
J:27-143
1h
TNF-1oqdJ08
J:27-143
1i
TNF-1oqdJ09
J:27-143
1j
TNF-1oqdJ10
J:27-143
Clan
:
no clan defined [family: BCMA-Tall_bind]
(3)
Family
:
BCMA-Tall_bind
(3)
Homo sapiens (Human)
(3)
2a
BCMA-Tall_bind-1oqdR01
R:1-39
2b
BCMA-Tall_bind-1oqdR02
R:1-39
2c
BCMA-Tall_bind-1oqdR03
R:1-39
2d
BCMA-Tall_bind-1oqdR04
R:1-39
2e
BCMA-Tall_bind-1oqdR05
R:1-39
2f
BCMA-Tall_bind-1oqdR06
R:1-39
2g
BCMA-Tall_bind-1oqdR07
R:1-39
2h
BCMA-Tall_bind-1oqdR08
R:1-39
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Asym.Unit (285 KB)
Header - Asym.Unit
Biol.Unit 1 (1.6 MB)
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