1OC5 - JenaLib

Title :   D405N MUTANT OF THE CELLOBIOHYDROLASE CEL6A FROM HUMICOLA INSOLENS IN COMPLEX WITH METHYL-CELLOBIOSYL-4-DEOXY-4-THIO-BETA-D-CELLOBIOSIDE

Authors :   A. Varrot, T. P. Frandsen, I. Von Ossowski, V. Boyer, H. Driguez, M. Schulein, G. J. Davies

Date :   06 Feb 03 (Deposition) - 10 Jul 03 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.70

Chains :   Asym./Biol. Unit : A

Keywords :   Hydrolase, Cellulose Degradation, Cellobiohydrolase, Cellulase, Glycoside Hydrolase Family 6, Processive Mechanism (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. Varrot, T. P. Frandsen, I. Von Ossowski, V. Boyer, H. Driguez, M. Schulein, G. J. Davies
Structural Basis For Ligand Binding And Processivity In Cellobiohydrolase Cel6A From Humicola Insolens
Structure V. 11 855 2003
PubMed-ID: 12842048 | Reference-DOI: 10.1016/S0969-2126(03)00124-2

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (5, 11)

Sites (11, 11)

Asymmetric Unit (11, 11)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ASN A:141 , ASP A:145 , ASN A:199 , GLU A:367 , HIS A:370 , LEU A:421 , HOH A:2074 , HOH A:2075 , HOH A:2180 , HOH A:2351 , HOH A:2411 , HOH A:2449 , HOH A:2450 , HOH A:2452 , HOH A:2453	BINDING SITE FOR RESIDUE NAG A 500
02	AC2	SOFTWARE	GLU A:189 , TRP A:277 , ARG A:414 , SGC A:508 , HOH A:2279 , HOH A:2280 , HOH A:2459 , HOH A:2460 , HOH A:2461 , HOH A:2464	BINDING SITE FOR RESIDUE MGL A 507
03	AC3	SOFTWARE	TRP A:274 , ASN A:280 , GLY A:369 , MGL A:507 , BGC A:509 , HOH A:2462 , HOH A:2463 , HOH A:2464 , HOH A:2465 , HOH A:2466	BINDING SITE FOR RESIDUE SGC A 508
04	AC4	SOFTWARE	ASN A:234 , HIS A:271 , TRP A:274 , SGC A:508 , BGC A:510 , HOH A:2229 , HOH A:2354 , HOH A:2465 , HOH A:2468 , HOH A:2470	BINDING SITE FOR RESIDUE BGC A 509
05	AC5	SOFTWARE	ALA A:183 , ASN A:310 , TRP A:371 , GOL A:503 , BGC A:509 , HOH A:2303 , HOH A:2357 , HOH A:2408 , HOH A:2469 , HOH A:2470 , HOH A:2471	BINDING SITE FOR RESIDUE BGC A 510
06	AC6	SOFTWARE	TYR A:292 , ARG A:302 , PHE A:347 , PRO A:348 , GLN A:350 , HOH A:2296 , HOH A:2454	BINDING SITE FOR RESIDUE GOL A 501
07	AC7	SOFTWARE	ALA A:313 , TRP A:314 , SER A:315 , GLN A:355 , SER A:358 , GLY A:359 , GLN A:361 , HOH A:2444 , HOH A:2456	BINDING SITE FOR RESIDUE GOL A 502
08	AC8	SOFTWARE	ALA A:309 , TRP A:371 , LYS A:399 , CYS A:404 , ASN A:405 , GOL A:506 , BGC A:510 , HOH A:2356	BINDING SITE FOR RESIDUE GOL A 503
09	AC9	SOFTWARE	TYR A:104 , GLN A:136 , TRP A:137 , ASP A:139 , LEU A:147 , GLU A:403 , GOL A:506 , HOH A:2386 , HOH A:2457	BINDING SITE FOR RESIDUE GOL A 504
10	BC1	SOFTWARE	ARG A:206 , SER A:213 , HOH A:2458	BINDING SITE FOR RESIDUE GOL A 505
11	BC2	SOFTWARE	ASP A:139 , TYR A:174 , LYS A:399 , GLU A:403 , GOL A:503 , GOL A:504	BINDING SITE FOR RESIDUE GOL A 506

SS Bonds (2, 2)

Cis Peptide Bonds (5, 5)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (2, 2)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:364
 aligned with GUX6_HUMIN | Q9C1S9 from UniProtKB/Swiss-Prot  Length:476

    Alignment length:364
                                   122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472    
           GUX6_HUMIN   113 ASYNGNPFEGVQLWANNYYRSEVHTLAIPQITDPALRAAASAVAEVPSFQWLDRNVTVDTLLVETLSEIRAANQAGANPPYAAQIVVYDLPDRDCAAAASNGEWAIANNGANNYKGYINRIREILISFSDVRTILVIEPDSLANMVTNMNVAKCSGAASTYRELTIYALKQLDLPHVAMYMDAGHAGWLGWPANIQPAAELFAKIYEDAGKPRAVRGLATNVANYNAWSISSPPPYTSPNPNYDEKHYIEAFRPLLEARGFPAQFIVDQGRSGKQPTGQKEWGHWCNAIGTGFGMRPTANTGHQYVDAFVWVKPGGECDGTSDTTAARYDYHCGLEDALKPAPEAGQWFQAYFEQLLRNANPPF 476
               SCOP domains d1oc5a_ A: Cellobiohydrolase II (Cel6)                                                                                                                                                                                                                                                                                                                                       SCOP domains
               CATH domains 1oc5A00 A:87-450 7-stranded glycosidases (cellulases)                                                                                                                                                                                                                                                                                                                        CATH domains
               Pfam domains --------------Glyco_hydro_6-1oc5A01 A:101-417                                                                                                                                                                                                                                                                                              --------------------------------- Pfam domains
         Sec.struct. author ...........ee..hhhhhhhhhhhhhhhh.hhhhhhhhhhhh.....eee.hhhhh.hhhhhhhhhhhhhhhh.....eeeeeee.................hhhhhhhhhhhhhhhhhhhhhhhh....eeeee....hhhhhhh..hhhhhhhhhhhhhhhhhhhhhh....eeeeee........hhhhhhhhhhhhhhhhhhh.....eeeeee.............hhhhh.....hhhhhhhhhhhhhhhh....eeeee.....................................eeeee...................hhhhhh.............hhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------GLYCOSYL_HYDROL_F-------------------------------GLYCOSYL_H----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1oc5 A  87 APYNGNPFEGVQLWANNYYRSEVHTLAIPQITDPALRAAASAVAEVPSFQWLDRNVTVDTLLVQTLSEIREANQAGANPQYAAQIVVYDLPDRDCAAAASNGEWAIANNGVNNYKAYINRIREILISFSDVRTILVIEPDSLANMVTNMNVPKCSGAASTYRELTIYALKQLDLPHVAMYMDAGHAGWLGWPANIQPAAELFAKIYEDAGKPRAVRGLATNVANYNAWSVSSPPPYTSPNPNYDEKHYIEAFRPLLEARGFPAQFIVDQGRSGKQPTGQKEWGHWCNAIGTGFGMRPTANTGHQYVDAFVWVKPGGECNGTSDTTAARYDYHCGLEDALKPAPEAGQWFNEYFIQLLRNANPPF 450
                                    96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (1, 1)

CATH Domains (1, 1)

Pfam Domains (1, 1)

Gene Ontology (10, 10)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A (GUX6_HUMIN | Q9C1S9)

molecular function
	GO:0016162	cellulose 1,4-beta-cellobiosidase activity	Catalysis of the hydrolysis of (1->4)-beta-D-glucosidic linkages in cellulose and cellotetraose, releasing cellobiose from the non-reducing ends of the chains.
	GO:0030248	cellulose binding	Interacting selectively and non-covalently with cellulose.
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
	GO:0016798	hydrolase activity, acting on glycosyl bonds	Catalysis of the hydrolysis of any glycosyl bond.
	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	Catalysis of the hydrolysis of any O-glycosyl bond.
biological process
	GO:0005975	carbohydrate metabolic process	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
	GO:0030245	cellulose catabolic process	The chemical reactions and pathways resulting in the breakdown of cellulose, a linear beta1-4 glucan of molecular mass 50-400 kDa with the pyranose units in the -4C1 conformation.
	GO:0008152	metabolic process	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
	GO:0000272	polysaccharide catabolic process	The chemical reactions and pathways resulting in the breakdown of a polysaccharide, a polymer of many (typically more than 10) monosaccharide residues linked glycosidically.
cellular component
	GO:0005576	extracellular region	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.

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	Cis Peptide Bonds
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Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File

1bvw	CELLOBIOHYDROLASE II (CEL6A) FROM HUMICOLA INSOLENS
1gz1	MUTANT D416A OF THE CELLOBIOHYDROLASE CEL6A FROM HUMICOLA INSOLENS IN COMPLEX WITH METHYL-CELLOBIOSYL-4-DEOXY-4-THIO-BETA-D- CELLOBIOSIDE
1hgw	CEL6A D175A MUTANT
1hgy	CEL6A D221A MUTANT
1oc6	STRUCTURE NATIVE OF THE D405N MUTANT OF THE CELLOBIOHYDROLASE CEL6A FROM HUMICOLA INSOLENS AT 1.5 ANGSTROM RESOLUTION
1oc7	D405N MUTANT OF THE CELLOBIOHYDROLASE CEL6A FROM HUMICOLA INSOLENS IN COMPLEX WITH METHYL-TETRATHIO-ALPHA-D-CELLOPENTOSIDE AT 1 .1 ANGSTROM RESOLUTION
1ocb	STRUCTURE OF THE WILD-TYPE CELLOBIOHYDROLASE CEL6A FROM HUMICOLAS INSOLENS IN COMPLEX WITH A FLUORESCENT SUBSTRATE
1ocj	MUTANT D416A OF THE CELLOBIOHYDROLASE CEL6A FROM HUMICOLA INSOLENS IN COMPLEX WITH A THIOPENTASACCHARIDE AT 1.3 ANGSTROM RESOLUTION
1ocn	MUTANT D416A OF THE CELLOBIOHYDROLASE CEL6A FROM HUMICOLA INSOLENS IN COMPLEX WITH A CELLOBIO-DERIVED ISOFAGOMINE AT 1.3 ANGSTROM RESOLUTION
1qjw	CEL6A (Y169F) WITH A NON-HYDROLYSABLE CELLOTETRAOSE
1qk0	CEL6A (Y169F) WITH A NON-HYDROLYSABLE CELLOTETRAOSE
1qk2	WILD TYPE CEL6A WITH A NON-HYDROLYSABLE CELLOTETRAOSE
2bvw	CELLOBIOHYDROLASE II (CEL6A) FROM HUMICOLA INSOLENS IN COMPLEX WITH GLUCOSE AND CELLOTETRAOSE

Description