1HGW - JenaLib

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Title :   CEL6A D175A MUTANT

Authors :   J. -Y. Zou, T. A. Jones

Date :   15 Dec 00 (Deposition) - 15 Jan 02 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.10

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Hydrolase (O-Glycosyl), Glycosidase, Glycoprotein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. Koivula, L. Ruohonen, G. Wohlfahrt, T. Reinikainen, T. T. Teeri, K. Piens, M. Claeyssens, M. Weber, A. Vasella, D. Becker, M. L. Sinnott, J. -Y. Zou, G. J. Kleywegt, M. Szardenings, J. Stahlberg, T. A. Jones
The Active Site Of Cellobiohydrolase Cel6A From Trichoderma Reesei: The Roles Of Aspartic Acids D221 And D175
J. Am. Chem. Soc. V. 124 10015 2002
PubMed-ID: 12188666 | Reference-DOI: 10.1021/JA012659Q
(for further references see the PDB file header)

Molecule 1 - CELLOBIOHYDROLASE CEL6A (FORMERLY CALLED CBH II)
	Chains	:	A, B
	EC Number	:	3.2.1.91
	Engineered	:	YES
	Expression System	:	TRICHODERMA REESEI
	Expression System Gene	:	CBH2 (D175A)
	Expression System Taxid	:	51453
	Fragment	:	CATALYTIC DOMAIN, RESIDUES 83-447
	Gene	:	CBH2 (D175A)
	Mutation	:	YES
	Organism Scientific	:	TRICHODERMA REESEI
	Organism Taxid	:	51453
	Synonym	:	CEL6A (D175A)

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 19)

No.	Name	Count	Type	Full Name
1	CO	1	Ligand/Ion	COBALT (II) ION
2	MAN	14	Ligand/Ion	ALPHA-D-MANNOSE
3	NAG	4	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE

Biological Unit 1 (2, 9)

No.	Name	Count	Type	Full Name
1	CO	-1	Ligand/Ion	COBALT (II) ION
2	MAN	7	Ligand/Ion	ALPHA-D-MANNOSE
3	NAG	2	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE

Biological Unit 2 (2, 9)

No.	Name	Count	Type	Full Name
1	CO	-1	Ligand/Ion	COBALT (II) ION
2	MAN	7	Ligand/Ion	ALPHA-D-MANNOSE
3	NAG	2	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE

Asymmetric Unit (19, 19)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	LEU A:243 , GLU A:244 , ASN A:247 , ASN A:289 , HOH A:2091	BINDING SITE FOR RESIDUE NAG A 501
02	AC2	SOFTWARE	TRP A:309 , ASN A:310 , PHE A:391 , HOH A:2232 , HOH A:2233	BINDING SITE FOR RESIDUE NAG A 502
03	AC3	SOFTWARE	THR A:87 , HOH A:2235	BINDING SITE FOR RESIDUE MAN A 503
04	AC4	SOFTWARE	THR A:97 , ASN A:161	BINDING SITE FOR RESIDUE MAN A 504
05	AC5	SOFTWARE	TYR A:103 , SER A:106 , LEU A:111 , MAN A:507	BINDING SITE FOR RESIDUE MAN A 505
06	AC6	SOFTWARE	ALA A:105 , SER A:109 , ALA A:125 , ALA A:128 , LYS A:129 , HOH A:2237 , ASN B:339	BINDING SITE FOR RESIDUE MAN A 506
07	AC7	SOFTWARE	SER A:106 , SER A:110 , MAN A:505 , HOH A:2238 , GLN B:281 , HIS B:340	BINDING SITE FOR RESIDUE MAN A 507
08	AC8	SOFTWARE	SER A:115 , GLN A:432 , HOH A:2217 , HOH A:2239 , HOH A:2240 , HOH A:2241 , HOH A:2242	BINDING SITE FOR RESIDUE MAN A 508
09	AC9	SOFTWARE	GLY A:118 , THR A:122	BINDING SITE FOR RESIDUE MAN A 509
10	BC1	SOFTWARE	LEU B:243 , GLU B:244 , ASN B:247 , ASN B:289 , HOH B:2200 , HOH B:2201	BINDING SITE FOR RESIDUE NAG B 501
11	BC2	SOFTWARE	TRP B:309 , ASN B:310 , PHE B:391 , HOH B:2157 , HOH B:2202	BINDING SITE FOR RESIDUE NAG B 502
12	BC3	SOFTWARE	THR B:85 , THR B:87 , LYS B:356 , GLY B:372 , ASN B:441	BINDING SITE FOR RESIDUE MAN B 503
13	BC4	SOFTWARE	THR B:97 , ASN B:161	BINDING SITE FOR RESIDUE MAN B 504
14	BC5	SOFTWARE	TYR B:103 , SER B:106 , GLU B:107 , LEU B:111 , MAN B:507 , HOH B:2203	BINDING SITE FOR RESIDUE MAN B 505
15	BC6	SOFTWARE	ALA B:105 , SER B:109 , ALA B:125 , ALA B:128 , LYS B:129 , HOH B:2009	BINDING SITE FOR RESIDUE MAN B 506
16	BC7	SOFTWARE	SER B:106 , SER B:110 , MAN B:505	BINDING SITE FOR RESIDUE MAN B 507
17	BC8	SOFTWARE	SER B:115 , GLN B:432	BINDING SITE FOR RESIDUE MAN B 508
18	BC9	SOFTWARE	GLY B:118 , THR B:122	BINDING SITE FOR RESIDUE MAN B 509
19	CC1	SOFTWARE	GLU A:146 , GLU A:208 , HOH A:2243	BINDING SITE FOR RESIDUE CO A 999

Asymmetric Unit

No.	Residues
1	A:176	-	A:235
2	A:368	-	A:415
3	B:176	-	B:235
4	B:368	-	B:415

Asymmetric Unit

No.	Residues
1	Gln A:357	-	Pro A:358
2	Gln A:422	-	Pro A:423
3	Asn A:443	-	Pro A:444
4	Gln B:357	-	Pro B:358
5	Gln B:422	-	Pro B:423
6	Asn B:443	-	Pro B:444

(no "SAP(SNP)/Variant" information available for 1HGW)

Asymmetric Unit (2, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	GLYCOSYL_HYDROL_F6_1	PS00655	Glycosyl hydrolases family 6 signature 1.	GUX2_HYPJE	191-207	2	A:167-183 B:167-183
2	GLYCOSYL_HYDROL_F6_2	PS00656	Glycosyl hydrolases family 6 signature 2.	GUX2_HYPJE	239-248	2	A:215-224 B:215-224

Biological Unit 1 (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	GLYCOSYL_HYDROL_F6_1	PS00655	Glycosyl hydrolases family 6 signature 1.	GUX2_HYPJE	191-207	1	A:167-183 -
2	GLYCOSYL_HYDROL_F6_2	PS00656	Glycosyl hydrolases family 6 signature 2.	GUX2_HYPJE	239-248	1	A:215-224 -

Biological Unit 2 (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	GLYCOSYL_HYDROL_F6_1	PS00655	Glycosyl hydrolases family 6 signature 1.	GUX2_HYPJE	191-207	1	- B:167-183
2	GLYCOSYL_HYDROL_F6_2	PS00656	Glycosyl hydrolases family 6 signature 2.	GUX2_HYPJE	239-248	1	- B:215-224

(no "Exon" information available for 1HGW)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:363
 aligned with GUX2_HYPJE | P07987 from UniProtKB/Swiss-Prot  Length:471

    Alignment length:363
                                   118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468   
           GUX2_HYPJE   109 TATYSGNPFVGVTPWANAYYASEVSSLAIPSLTGAMATAAAAVAKVPSFMWLDTLDKTPLMEQTLADIRTANKNGGNYAGQFVVYDLPDRDCAALASNGEYSIADGGVAKYKNYIDTIRQIVVEYSDIRTLLVIEPDSLANLVTNLGTPKCANAQSAYLECINYAVTQLNLPNVAMYLDAGHAGWLGWPANQDPAAQLFANVYKNASSPRALRGLATNVANYNGWNITSPPSYTQGNAVYNEKLYIHAIGPLLANHGWSNAFFITDQGRSGKQPTGQQQWGDWCNVIGTGFGIRPSANTGDSLLDSFVWVKPGGECDGTSDSSAPRFDSHCALPDALQPAPQAGAWFQAYFVQLLTNANPSFL 471
               SCOP domains d1hgwa_ A: Cellobiohydrolase II (Cel6)                                                                                                                                                                                                                                                                                                                                      SCOP domains
               CATH domains 1hgwA00 A:85-447 7-stranded glycosidases (cellulases)                                                                                                                                                                                                                                                                                                                       CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............ee..hhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eee.hhhhhhhhhhhhhhhhhhhhh...eeeeeee.................hhhhhhhhhhhhhhhhhhhhhhhh....eeeee...hhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh....eeeeee........hhhhhhhhhhhhhhhhhhh.....eeeeee.............hhhhh.....hhhhhhhhhhhhhhhh.....eeeee.....................................eeeee...................hhhhhh.............hhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------GLYCOSYL_HYDROL_F-------------------------------GLYCOSYL_H------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1hgw A  85 TATYSGNPFVGVTPWANAYYASEVSSLAIPSLTGAMATAAAAVAKVPSFMWLDTLDKTPLMEQTLADIRTANKNGGNYAGQFVVYDLPDRACAALASNGEYSIADGGVAKYKNYIDTIRQIVVEYSDIRTLLVIEPDSLANLVTNLGTPKCANAQSAYLECINYAVTQLNLPNVAMYLDAGHAGWLGWPANQDPAAQLFANVYKNASSPRALRGLATNVANYNGWNITSPPSYTQGNAVYNEKLYIHAIGPLLANHGWSNAFFITDQGRSGKQPTGQQQWGDWCNVIGTGFGIRPSANTGDSLLDSFVWVKPGGECDGTSDSSAPRFDSHCALPDALQPAPQAGAWFQAYFVQLLTNANPSFL 447
                                    94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444

Chain B from PDB  Type:PROTEIN  Length:363
 aligned with GUX2_HYPJE | P07987 from UniProtKB/Swiss-Prot  Length:471

    Alignment length:363
                                   118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468   
           GUX2_HYPJE   109 TATYSGNPFVGVTPWANAYYASEVSSLAIPSLTGAMATAAAAVAKVPSFMWLDTLDKTPLMEQTLADIRTANKNGGNYAGQFVVYDLPDRDCAALASNGEYSIADGGVAKYKNYIDTIRQIVVEYSDIRTLLVIEPDSLANLVTNLGTPKCANAQSAYLECINYAVTQLNLPNVAMYLDAGHAGWLGWPANQDPAAQLFANVYKNASSPRALRGLATNVANYNGWNITSPPSYTQGNAVYNEKLYIHAIGPLLANHGWSNAFFITDQGRSGKQPTGQQQWGDWCNVIGTGFGIRPSANTGDSLLDSFVWVKPGGECDGTSDSSAPRFDSHCALPDALQPAPQAGAWFQAYFVQLLTNANPSFL 471
               SCOP domains d1hgwb_ B: Cellobiohydrolase II (Cel6)                                                                                                                                                                                                                                                                                                                                      SCOP domains
               CATH domains 1hgwB00 B:85-447 7-stranded glycosidases (cellulases)                                                                                                                                                                                                                                                                                                                       CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............ee..hhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eee.hhhhhhhhhhhhhhhhhhhh....eeeeeee.................hhhhhhhhhhhhhhhhhhhhhhhh....eeeee..hhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh....eeeeee..hhhhhhhhhhhhhhhhhhhhhhhhh.....eeeeee.............hhhhh.....hhhhhhhhhhhhhhhh.....eeeee.....................................eeeee...................hhhhhh.............hhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------GLYCOSYL_HYDROL_F-------------------------------GLYCOSYL_H------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1hgw B  85 TATYSGNPFVGVTPWANAYYASEVSSLAIPSLTGAMATAAAAVAKVPSFMWLDTLDKTPLMEQTLADIRTANKNGGNYAGQFVVYDLPDRACAALASNGEYSIADGGVAKYKNYIDTIRQIVVEYSDIRTLLVIEPDSLANLVTNLGTPKCANAQSAYLECINYAVTQLNLPNVAMYLDAGHAGWLGWPANQDPAAQLFANVYKNASSPRALRGLATNVANYNGWNITSPPSYTQGNAVYNEKLYIHAIGPLLANHGWSNAFFITDQGRSGKQPTGQQQWGDWCNVIGTGFGIRPSANTGDSLLDSFVWVKPGGECDGTSDSSAPRFDSHCALPDALQPAPQAGAWFQAYFVQLLTNANPSFL 447
                                    94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

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Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: 7-stranded beta/alpha barrel (137)

Superfamily: Glycosyl hydrolases family 6, cellulases (42)

Family: Glycosyl hydrolases family 6, cellulases (34)

Protein domain: Cellobiohydrolase II (Cel6) (17)

Trichoderma reesei, Cel6a [TaxId: 51453] (7)

1a	d1hgwa_	A:
1b	d1hgwb_	B:

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: Alpha-Beta Barrel (2994)

Topology: TIM Barrel (2806)

Homologous Superfamily: 7-stranded glycosidases (cellulases) (28)

Trichoderma reesei. Organism_taxid: 51453. (4)

1a	1hgwA00	A:85-447
1b	1hgwB00	B:85-447

(no "Pfam Domain" information available for 1HGW)

Asymmetric Unit(hide GO term definitions)

Chain A,B (GUX2_HYPJE | P07987)

molecular function
	GO:0016162	cellulose 1,4-beta-cellobiosidase activity	Catalysis of the hydrolysis of (1->4)-beta-D-glucosidic linkages in cellulose and cellotetraose, releasing cellobiose from the non-reducing ends of the chains.
	GO:0030248	cellulose binding	Interacting selectively and non-covalently with cellulose.
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
	GO:0016798	hydrolase activity, acting on glycosyl bonds	Catalysis of the hydrolysis of any glycosyl bond.
	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	Catalysis of the hydrolysis of any O-glycosyl bond.
	GO:0042802	identical protein binding	Interacting selectively and non-covalently with an identical protein or proteins.
biological process
	GO:0005975	carbohydrate metabolic process	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
	GO:0030245	cellulose catabolic process	The chemical reactions and pathways resulting in the breakdown of cellulose, a linear beta1-4 glucan of molecular mass 50-400 kDa with the pyranose units in the -4C1 conformation.
	GO:0008152	metabolic process	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
	GO:0000272	polysaccharide catabolic process	The chemical reactions and pathways resulting in the breakdown of a polysaccharide, a polymer of many (typically more than 10) monosaccharide residues linked glycosidically.
cellular component
	GO:0005576	extracellular region	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.

Asymmetric Unit
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	Cis Peptide Bonds
		Asn A:443 - Pro A:444	[ RasMol ]
		Asn B:443 - Pro B:444	[ RasMol ]
		Gln A:357 - Pro A:358	[ RasMol ]
		Gln A:422 - Pro A:423	[ RasMol ]
		Gln B:357 - Pro B:358	[ RasMol ]
		Gln B:422 - Pro B:423	[ RasMol ]

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	1hgw
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	3.2.1.91
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	GUX2_HYPJE \| P07987	:	1cb2 1hgy 1qjw 1qk0 1qk2 3cbh 4au0 4ax6 4ax7 4i5r 4i5u

1cb2	CELLOBIOHYDROLASE II, CATALYTIC DOMAIN, MUTANT Y169F
1hgy	CEL6A D221A MUTANT
1qjw	CEL6A (Y169F) WITH A NON-HYDROLYSABLE CELLOTETRAOSE
1qk0	CEL6A (Y169F) WITH A NON-HYDROLYSABLE CELLOTETRAOSE
1qk2	WILD TYPE CEL6A WITH A NON-HYDROLYSABLE CELLOTETRAOSE

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 19)

Sites (19, 19)

SS Bonds (4, 4)

Cis Peptide Bonds (6, 6)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (2, 4)

Exons (0, 0)

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Gene Ontology (11, 11)

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