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Asym./Biol. Unit (Jmol Viewer)

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Title :   CELLOBIOHYDROLASE II (CEL6A) FROM HUMICOLA INSOLENS IN COMPLEX WITH GLUCOSE AND CELLOTETRAOSE

Authors :   A. Varrot, G. J. Davies, M. Schulein

Date :   18 Feb 99 (Deposition) - 25 Feb 00 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.70

Chains :   Asym./Biol. Unit : A,B

Keywords :   Hydrolase, Cellulose Degradation, Cellobiohydrolase, Cellulase, Glycoside Hydrolase Family 6 (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. Varrot, M. Schulein, G. J. Davies
Structural Changes Of The Active Site Tunnel Of Humicola Insolens Cellobiohydrolase, Cel6A, Upon Oligosaccharide Binding.
Biochemistry V. 38 8884 1999
PubMed-ID: 10413461 | Reference-DOI: 10.1021/BI9903998

Molecule 1 - CELLOBIOHYDROLASE II
	Chains	:	A, B
	EC Number	:	3.2.1.91
	Engineered	:	YES
	Expression System	:	ASPERGILLUS ORYZAE
	Expression System Plasmid	:	UNDER CONTROL OF THE FUNGAL AMYLASE PROMOTER AND AMYLOGLUCOSIDASE TERMINATOR
	Expression System Taxid	:	5062
	Expression System Vector Type	:	FUNGAL
	Fragment	:	CATALYTIC CORE DOMAIN
	Organism Scientific	:	HUMICOLA INSOLENS
	Organism Taxid	:	34413
	Other Details	:	N-LINKED N-ACETYLGLUCOSAMINE ON RESIDUE ASN 141
	Other Details - Source	:	FULL-LENGTH ENZYME OVER-EXPRESSED
	Synonym	:	CELLULASE, CEL6A

		1	2
Asymmetric/Biological Unit	:	A	B

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (5, 13)

No.	Name	Count	Type	Full Name
1	BGC	2	Ligand/Ion	BETA-D-GLUCOSE
2	CTR	1	Ligand/Ion	CELLOTRIOSE
3	CTT	1	Ligand/Ion	BETA-D-GLUCOPYRANOSYL-(1->4)-BETA-D-GLUCOPYRANOSYL-(1->4)-BETA-D-GLUCOPYRANOSYL-(1->4)-BETA-D-GLUCOPYRANOSE
4	GOL	7	Ligand/Ion	GLYCEROL
5	NAG	2	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE

Asymmetric Unit (12, 12)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ASN A:141 , ASP A:145 , ASN A:199 , HOH A:657 , HOH A:675 , HOH A:695 , HOH A:893	BINDING SITE FOR RESIDUE NAG A 500
02	AC2	SOFTWARE	TRP A:137 , ASP A:139 , SER A:186 , LYS A:399 , PRO A:400 , GLU A:403 , GLY A:432 , HOH A:619 , HOH A:630 , HOH A:684 , HOH A:690	BINDING SITE FOR RESIDUE BGC A 602
03	AC3	SOFTWARE	ASP A:180 , ASP A:226 , THR A:233 , ASN A:234 , HIS A:271 , GLY A:273 , TRP A:274 , TRP A:277 , ALA A:279 , ASN A:280 , ASN A:310 , TRP A:371 , HOH A:636 , HOH A:646 , HOH A:655 , HOH A:659 , HOH A:696 , HOH A:703 , HOH A:707 , HOH A:782 , HOH A:803	BINDING SITE FOR RESIDUE CTT A 600
04	AC4	SOFTWARE	VAL A:316 , SER A:317 , SER A:318 , PRO A:320 , HOH A:857 , HOH A:924	BINDING SITE FOR RESIDUE GOL A 604
05	AC5	SOFTWARE	TRP A:100 , ALA A:101 , ARG A:106 , HOH A:649 , HOH A:715 , HIS B:110 , ILE B:114	BINDING SITE FOR RESIDUE GOL A 605
06	AC6	SOFTWARE	HIS A:110 , HOH A:629 , HOH A:709 , ALA B:101 , ARG B:106 , GLU B:131 , HOH B:747	BINDING SITE FOR RESIDUE GOL A 606
07	AC7	SOFTWARE	GLY A:91 , ASN A:92 , PRO A:93 , ARG A:218 , ASN B:159 , GLN B:160 , GLY B:162 , HOH B:781	BINDING SITE FOR RESIDUE GOL A 609
08	AC8	SOFTWARE	TYR A:415 , ASP A:416 , TYR A:417	BINDING SITE FOR RESIDUE GOL A 610
09	AC9	SOFTWARE	ASP B:119 , PRO B:120 , ASN B:141 , ASP B:145 , ASN B:199 , HOH B:684 , HOH B:700 , HOH B:733 , HOH B:857	BINDING SITE FOR RESIDUE NAG B 500
10	BC1	SOFTWARE	TRP B:137 , ASP B:139 , SER B:186 , LYS B:399 , PRO B:400 , GLU B:403 , ALA B:431 , GLY B:432 , HOH B:631 , HOH B:647 , HOH B:661 , HOH B:663	BINDING SITE FOR RESIDUE BGC B 603
11	BC2	SOFTWARE	ASP B:180 , ASP B:226 , THR B:233 , ASN B:234 , HIS B:271 , GLY B:273 , TRP B:274 , ASN B:280 , ASN B:310 , GLY B:369 , TRP B:371 , HOH B:610 , HOH B:626 , HOH B:649 , HOH B:667 , HOH B:685 , HOH B:689 , HOH B:868	BINDING SITE FOR RESIDUE CTR B 601
12	BC3	SOFTWARE	ARG B:206 , SER B:213 , HOH B:855	BINDING SITE FOR RESIDUE GOL B 608

Asymmetric/Biological Unit

No.	Residues
1	A:181	-	A:240
2	A:372	-	A:419
3	B:181	-	B:240
4	B:372	-	B:419

Asymmetric/Biological Unit

No.	Residues
1	Asn A:164	-	Pro A:165
2	Ser A:324	-	Pro A:325
3	Gln A:361	-	Pro A:362
4	Lys A:426	-	Pro A:427
5	Asn A:447	-	Pro A:448
6	Asn B:164	-	Pro B:165
7	Ser B:324	-	Pro B:325
8	Gln B:361	-	Pro B:362
9	Lys B:426	-	Pro B:427
10	Asn B:447	-	Pro B:448

(no "SAP(SNP)/Variant" information available for 2BVW)

Asymmetric/Biological Unit (2, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	GLYCOSYL_HYDROL_F6_1	PS00655	Glycosyl hydrolases family 6 signature 1.	GUX6_HUMIN	198-214	2	A:172-188 B:172-188
2	GLYCOSYL_HYDROL_F6_2	PS00656	Glycosyl hydrolases family 6 signature 2.	GUX6_HUMIN	246-255	2	A:220-229 B:220-229

(no "Exon" information available for 2BVW)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:361
 aligned with GUX6_HUMIN | Q9C1S9 from UniProtKB/Swiss-Prot  Length:476

    Alignment length:361
                                   125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475 
           GUX6_HUMIN   116 NGNPFEGVQLWANNYYRSEVHTLAIPQITDPALRAAASAVAEVPSFQWLDRNVTVDTLLVETLSEIRAANQAGANPPYAAQIVVYDLPDRDCAAAASNGEWAIANNGANNYKGYINRIREILISFSDVRTILVIEPDSLANMVTNMNVAKCSGAASTYRELTIYALKQLDLPHVAMYMDAGHAGWLGWPANIQPAAELFAKIYEDAGKPRAVRGLATNVANYNAWSISSPPPYTSPNPNYDEKHYIEAFRPLLEARGFPAQFIVDQGRSGKQPTGQKEWGHWCNAIGTGFGMRPTANTGHQYVDAFVWVKPGGECDGTSDTTAARYDYHCGLEDALKPAPEAGQWFQAYFEQLLRNANPPF 476
               SCOP domains d2bvwa_ A: Cellobiohydrolase II (Cel6)                                                                                                                                                                                                                                                                                                                                    SCOP domains
               CATH domains 2bvwA00 A:90-450 7-stranded glycosidases (cellulases)                                                                                                                                                                                                                                                                                                                     CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............hhhhhhhhhh.hhh...hhhhhhhhhhhh....eee..hhhhh.hhhhhhhhhhhhhh........eeeee..................hhh.hhhhhhhhhhhhhhhhhh.....eeeee...hhhhhhh....hhhhhhhhhhhhhhhhhhhh.....eeeeee.........hhhhhhhhhhhhhhhhh......eeeeee..............hhh.......hhhhhhhhhhhhhhh....eeeee.....................................eeeee....................hhhh...............hhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------GLYCOSYL_HYDROL_F-------------------------------GLYCOSYL_H----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2bvw A  90 NGNPFEGVQLWANNYYRSEVHTLAIPQITDPALRAAASAVAEVPSFQWLDRNVTVDTLLVQTLSEIREANQAGANPQYAAQIVVYDLPDRDCAAAASNGEWAIANNGVNNYKAYINRIREILISFSDVRTILVIEPDSLANMVTNMNVPKCSGAASTYRELTIYALKQLDLPHVAMYMDAGHAGWLGWPANIQPAAELFAKIYEDAGKPRAVRGLATNVANYNAWSVSSPPPYTSPNPNYDEKHYIEAFRPLLEARGFPAQFIVDQGRSGKQPTGQKEWGHWCNAIGTGFGMRPTANTGHQYVDAFVWVKPGGECDGTSDTTAARYDYHCGLEDALKPAPEAGQWFNEYFIQLLRNANPPF 450
                                    99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449

Chain B from PDB  Type:PROTEIN  Length:360
 aligned with GUX6_HUMIN | Q9C1S9 from UniProtKB/Swiss-Prot  Length:476

    Alignment length:360
                                   126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476
           GUX6_HUMIN   117 GNPFEGVQLWANNYYRSEVHTLAIPQITDPALRAAASAVAEVPSFQWLDRNVTVDTLLVETLSEIRAANQAGANPPYAAQIVVYDLPDRDCAAAASNGEWAIANNGANNYKGYINRIREILISFSDVRTILVIEPDSLANMVTNMNVAKCSGAASTYRELTIYALKQLDLPHVAMYMDAGHAGWLGWPANIQPAAELFAKIYEDAGKPRAVRGLATNVANYNAWSISSPPPYTSPNPNYDEKHYIEAFRPLLEARGFPAQFIVDQGRSGKQPTGQKEWGHWCNAIGTGFGMRPTANTGHQYVDAFVWVKPGGECDGTSDTTAARYDYHCGLEDALKPAPEAGQWFQAYFEQLLRNANPPF 476
               SCOP domains d2bvwb_ B: Cellobiohydrolase II (Cel6)                                                                                                                                                                                                                                                                                                                                   SCOP domains
               CATH domains 2bvwB00 B:91-450 7-stranded glycosidases (cellulases)                                                                                                                                                                                                                                                                                                                    CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ............hhhhhhhhh..hhh...hhhhhhhhhhhh....eee..hhh...hhhhhhhhhhhhhh........eeeee..................hhh.hhhhhhhhhhhhhhhhhh.....eeeee...hhhhhhh....hhhhhhhhhhhhhhhhhhhh.....eeeeee.........hhhhhhhhhhhhhhhhh......eeeeee..............hhh.......hhhhhhhhhhhhhhh....eeeee.....................................eeeee....................hhhh...............hhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------GLYCOSYL_HYDROL_F-------------------------------GLYCOSYL_H----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2bvw B  91 GNPFEGVQLWANNYYRSEVHTLAIPQITDPALRAAASAVAEVPSFQWLDRNVTVDTLLVQTLSEIREANQAGANPQYAAQIVVYDLPDRDCAAAASNGEWAIANNGVNNYKAYINRIREILISFSDVRTILVIEPDSLANMVTNMNVPKCSGAASTYRELTIYALKQLDLPHVAMYMDAGHAGWLGWPANIQPAAELFAKIYEDAGKPRAVRGLATNVANYNAWSVSSPPPYTSPNPNYDEKHYIEAFRPLLEARGFPAQFIVDQGRSGKQPTGQKEWGHWCNAIGTGFGMRPTANTGHQYVDAFVWVKPGGECDGTSDTTAARYDYHCGLEDALKPAPEAGQWFNEYFIQLLRNANPPF 450
                                   100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

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Folds(

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Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: 7-stranded beta/alpha barrel (137)

Superfamily: Glycosyl hydrolases family 6, cellulases (42)

Family: Glycosyl hydrolases family 6, cellulases (34)

Protein domain: Cellobiohydrolase II (Cel6) (17)

Humicola insolens, Cel6a [TaxId: 34413] (9)

1a	d2bvwa_	A:
1b	d2bvwb_	B:

Asymmetric/Biological Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: Alpha-Beta Barrel (2994)

Topology: TIM Barrel (2806)

Homologous Superfamily: 7-stranded glycosidases (cellulases) (28)

Humicola insolens. Organism_taxid: 34413. (9)

1a	2bvwB00	B:91-450
1b	2bvwA00	A:90-450

(no "Pfam Domain" information available for 2BVW)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B (GUX6_HUMIN | Q9C1S9)

molecular function
	GO:0016162	cellulose 1,4-beta-cellobiosidase activity	Catalysis of the hydrolysis of (1->4)-beta-D-glucosidic linkages in cellulose and cellotetraose, releasing cellobiose from the non-reducing ends of the chains.
	GO:0030248	cellulose binding	Interacting selectively and non-covalently with cellulose.
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
	GO:0016798	hydrolase activity, acting on glycosyl bonds	Catalysis of the hydrolysis of any glycosyl bond.
	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	Catalysis of the hydrolysis of any O-glycosyl bond.
biological process
	GO:0005975	carbohydrate metabolic process	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
	GO:0030245	cellulose catabolic process	The chemical reactions and pathways resulting in the breakdown of cellulose, a linear beta1-4 glucan of molecular mass 50-400 kDa with the pyranose units in the -4C1 conformation.
	GO:0008152	metabolic process	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
	GO:0000272	polysaccharide catabolic process	The chemical reactions and pathways resulting in the breakdown of a polysaccharide, a polymer of many (typically more than 10) monosaccharide residues linked glycosidically.
cellular component
	GO:0005576	extracellular region	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.

Asymmetric/Biological Unit
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	Cis Peptide Bonds
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		Asn A:447 - Pro A:448	[ RasMol ]
		Asn B:164 - Pro B:165	[ RasMol ]
		Asn B:447 - Pro B:448	[ RasMol ]
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		Ser A:324 - Pro A:325	[ RasMol ]
		Ser B:324 - Pro B:325	[ RasMol ]

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	2bvw
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	GUX6_HUMIN \| Q9C1S9	:	1bvw 1gz1 1oc5 1oc6 1oc7 1ocb 1ocj 1ocn 4i5r 4i5u

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Description

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Ligands, Modified Residues, Ions (5, 13)

Sites (12, 12)

SS Bonds (4, 4)

Cis Peptide Bonds (10, 10)

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