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(-) Description

Title :  1.55 A CRYSTAL STRUCTURE OF A TERNARY COMPLEX OF GDP-MANNOSE DEHYDROGENASE FROM PSUEDOMONAS AERUGINOSA
 
Authors :  C. F. Snook, P. A. Tipton, L. J. Beamer
Date :  24 Sep 02  (Deposition) - 06 May 03  (Release) - 12 Nov 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.55
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Rossmann Fold, Domain-Swapped Dimer, Enzyme Complex With Cofactor And Product, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. F. Snook, P. A. Tipton, L. J. Beamer
The Crystal Structure Of Gdp-Mannose Dehydrogenase: A Key Enzyme In Alginate Biosynthesis Of P. Aeruginosa
Biochemistry V. 42 4658 2003
PubMed-ID: 12705829  |  Reference-DOI: 10.1021/BI027328K
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - GDP-MANNOSE 6-DEHYDROGENASE
    Chains: A, B, C, D
    EC Number: 1.1.1.132
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET-3A
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: ALGD
    Organism Scientific: PSEUDOMONAS AERUGINOSA
    Organism Taxid: 287
    Synonym: GMD

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 13)

Asymmetric Unit (5, 13)
No.NameCountTypeFull Name
1ACY2Ligand/IonACETIC ACID
2GDX4Ligand/IonGUANOSINE 5'-(TRIHYDROGEN DIPHOSPHATE), P'-D-MANNOPYRANOSYL ESTER
3MPD1Ligand/Ion(4S)-2-METHYL-2,4-PENTANEDIOL
4NAD4Ligand/IonNICOTINAMIDE-ADENINE-DINUCLEOTIDE
5SUC2Ligand/IonSUCROSE
Biological Unit 1 (3, 5)
No.NameCountTypeFull Name
1ACY-1Ligand/IonACETIC ACID
2GDX2Ligand/IonGUANOSINE 5'-(TRIHYDROGEN DIPHOSPHATE), P'-D-MANNOPYRANOSYL ESTER
3MPD-1Ligand/Ion(4S)-2-METHYL-2,4-PENTANEDIOL
4NAD2Ligand/IonNICOTINAMIDE-ADENINE-DINUCLEOTIDE
5SUC1Ligand/IonSUCROSE
Biological Unit 2 (5, 8)
No.NameCountTypeFull Name
1ACY2Ligand/IonACETIC ACID
2GDX2Ligand/IonGUANOSINE 5'-(TRIHYDROGEN DIPHOSPHATE), P'-D-MANNOPYRANOSYL ESTER
3MPD1Ligand/Ion(4S)-2-METHYL-2,4-PENTANEDIOL
4NAD2Ligand/IonNICOTINAMIDE-ADENINE-DINUCLEOTIDE
5SUC1Ligand/IonSUCROSE

(-) Sites  (13, 13)

Asymmetric Unit (13, 13)
No.NameEvidenceResiduesDescription
01AC1SOFTWARELYS B:181 , ASP B:185 , HOH B:2190 , HOH B:2297 , ARG C:192 , HOH C:2112 , HOH C:2238 , GLU D:139 , ASP D:140BINDING SITE FOR RESIDUE SUC B 2012
02AC2SOFTWAREASP A:195 , PRO A:197 , HOH A:2083 , GLN B:247 , HIS B:249 , HOH B:2159 , LEU D:194 , ASP D:195 , HOH D:2128 , HOH D:2136 , HOH D:2213 , HOH D:2395 , HOH D:2399BINDING SITE FOR RESIDUE SUC D 2013
03AC3SOFTWAREGLY A:7 , GLY A:9 , TYR A:10 , VAL A:11 , VAL A:29 , ASP A:30 , VAL A:31 , LYS A:35 , CYS A:83 , VAL A:84 , GLY A:85 , THR A:86 , TYR A:98 , VAL A:102 , GLU A:105 , SER A:123 , THR A:124 , GLU A:157 , HOH A:2019 , HOH A:2067 , HOH A:2097 , HOH A:2147 , HOH A:2206 , HOH A:2239 , HOH A:2244 , LYS B:271 , ARG B:331 , HOH B:2143BINDING SITE FOR RESIDUE NAD A 2001
04AC4SOFTWARELYS A:271 , ARG A:331 , HOH A:2243 , GLY B:7 , GLY B:9 , TYR B:10 , VAL B:11 , VAL B:29 , ASP B:30 , VAL B:31 , LYS B:35 , CYS B:83 , VAL B:84 , GLY B:85 , THR B:86 , TYR B:98 , THR B:101 , VAL B:102 , GLU B:105 , SER B:123 , THR B:124 , GLU B:157 , HOH B:2037 , HOH B:2079 , HOH B:2101 , HOH B:2129 , HOH B:2140 , HOH B:2227 , HOH B:2229BINDING SITE FOR RESIDUE NAD B 2002
05AC5SOFTWAREGLY C:7 , GLY C:9 , TYR C:10 , VAL C:11 , VAL C:29 , ASP C:30 , VAL C:31 , LYS C:35 , CYS C:83 , VAL C:84 , GLY C:85 , THR C:86 , TYR C:98 , VAL C:102 , GLU C:105 , SER C:123 , THR C:124 , GLU C:157 , HOH C:2047 , HOH C:2068 , HOH C:2071 , HOH C:2100 , HOH C:2120 , HOH C:2227 , HOH C:2284 , HOH C:2370 , HOH C:2393 , LYS D:271 , ARG D:331 , HOH D:2027BINDING SITE FOR RESIDUE NAD C 2003
06AC6SOFTWARELYS C:271 , ARG C:331 , HOH C:2051 , GLY D:7 , GLY D:9 , TYR D:10 , VAL D:11 , VAL D:29 , ASP D:30 , VAL D:31 , LYS D:35 , CYS D:83 , VAL D:84 , GLY D:85 , THR D:86 , TYR D:98 , VAL D:102 , GLU D:105 , SER D:123 , THR D:124 , GLU D:157 , HOH D:2014 , HOH D:2059 , HOH D:2070 , HOH D:2123 , HOH D:2206 , HOH D:2341 , HOH D:2342BINDING SITE FOR RESIDUE NAD D 2004
07AC7SOFTWAREGLU A:157 , PHE A:158 , LEU A:159 , ARG A:160 , GLU A:161 , LYS A:210 , ASN A:214 , HIS A:217 , VAL A:221 , ASN A:225 , HOH A:2020 , HOH A:2031 , HOH A:2046 , HOH A:2139 , HOH A:2201 , LEU B:251 , TYR B:256 , TYR B:257 , MET B:258 , ARG B:259 , PHE B:262 , PHE B:264 , GLY B:265 , CYS B:268 , LEU B:269 , PHE B:323 , LYS B:324 , HOH B:2032 , HOH B:2143BINDING SITE FOR RESIDUE GDX A 2005
08AC8SOFTWARETYR A:256 , TYR A:257 , MET A:258 , ARG A:259 , PHE A:262 , PHE A:264 , GLY A:265 , CYS A:268 , LEU A:269 , PHE A:323 , LYS A:324 , HOH A:2022 , HOH A:2025 , HOH A:2039 , HOH A:2095 , HOH A:2115 , HOH A:2242 , HOH A:2243 , GLU B:157 , PHE B:158 , LEU B:159 , ARG B:160 , GLU B:161 , LYS B:210 , ASN B:214 , HIS B:217 , VAL B:221 , ASN B:225BINDING SITE FOR RESIDUE GDX A 2006
09AC9SOFTWAREGLU C:157 , PHE C:158 , LEU C:159 , ARG C:160 , GLU C:161 , LYS C:210 , ASN C:214 , HIS C:217 , VAL C:221 , ASN C:225 , TYR D:256 , TYR D:257 , MET D:258 , ARG D:259 , PHE D:262 , PHE D:264 , GLY D:265 , CYS D:268 , LEU D:269 , PHE D:323 , LYS D:324 , HOH D:2027 , HOH D:2042 , HOH D:2050 , HOH D:2051 , HOH D:2066 , HOH D:2183 , HOH D:2255BINDING SITE FOR RESIDUE GDX D 2007
10BC1SOFTWARELEU C:251 , TYR C:256 , TYR C:257 , MET C:258 , ARG C:259 , PHE C:262 , PHE C:264 , GLY C:265 , CYS C:268 , PHE C:323 , LYS C:324 , ACY C:2009 , ACY C:2010 , HOH C:2080 , GLU D:157 , PHE D:158 , LEU D:159 , ARG D:160 , GLU D:161 , LYS D:210 , ASN D:214 , HIS D:217 , VAL D:221 , ASN D:225 , HOH D:2073 , HOH D:2083 , HOH D:2086 , HOH D:2144 , HOH D:2341 , HOH D:2345 , HOH D:2396BINDING SITE FOR RESIDUE GDX D 2008
11BC2SOFTWAREARG C:259 , ACY C:2010 , GDX D:2008BINDING SITE FOR RESIDUE ACY C 2009
12BC3SOFTWAREARG C:259 , PRO C:260 , VAL C:420 , ACY C:2009 , GDX D:2008BINDING SITE FOR RESIDUE ACY C 2010
13BC4SOFTWAREHOH C:2039 , LYS D:366BINDING SITE FOR RESIDUE MPD C 2011

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1MV8)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1MV8)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1MV8)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1MV8)

(-) Exons   (0, 0)

(no "Exon" information available for 1MV8)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:436
 aligned with ALGD_PSEAE | P11759 from UniProtKB/Swiss-Prot  Length:436

    Alignment length:436
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430      
           ALGD_PSEAE     1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDFGVGTNPEFLRESTAIKDYDFPPMTVIGELDKQTGDLLEEIYRELDAPIIRKTVEVAEMIKYTCNVWHAAKVTFANEIGNIAKAVGVDGREVMDVICQDHKLNLSRYYMRPGFAFGGSCLPKDVRALTYRASQLDVEHPMLGSLMRSNSNQVQKAFDLITSHDTRKVGLLGLSFKAGTDDLRESPLVELAEMLIGKGYELRIFDRNVEYARVHGANKEYIESKIPHVSSLLVSDLDEVVASSDVLVLGNGDELFVDLVNKTPSGKKLVDLVGFMPHTTTAQAEGICW 436
               SCOP domains d1mv8a2 A:1-202 GDP-mannose 6-dehydrogenase                                                                                                                                                               d1mv8a1 A:203-300 GDP-mannose 6-dehydrogenase, middle domain                                      d1mv8a3 A:301-436 GDP-mannose 6-dehydrogenase, GDP-binding domain                                                                        SCOP domains
               CATH domains 1mv8A01 A:1-202 NAD(P)-binding Rossmann-like Domain                                                                                                                                                       --------------------------------1mv8A03 A:235-436 NAD(P)-binding Rossmann-like Domain                                                                                                                                                      CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee....hhhhhhhhhhhh..eeeee..hhhhhhhhhh........hhhhhhhhhhhh..eeee.hhhhhhhh..eeee.............hhhhhhhhhhhhhhhh......eeee......hhhhhhhhhhhhhhhh.......eeee........hhhhhhhh...eeeee.hhhhhhhhhhhhh.....eeeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhh.....................hhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhh.....eeeee.............hhhhhhhhhhhhh..eeeeehhhhhhhh....hhhhhhhhhhhhhh....hhhhhhhhh.eeee...hhhhhhhhhh.....eeee............eee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1mv8 A   1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDFGVGTNPEFLRESTAIKDYDFPPMTVIGELDKQTGDLLEEIYRELDAPIIRKTVEVAEMIKYTCNVWHAAKVTFANEIGNIAKAVGVDGREVMDVICQDHKLNLSRYYMRPGFAFGGSCLPKDVRALTYRASQLDVEHPMLGSLMRSNSNQVQKAFDLITSHDTRKVGLLGLSFKAGTDDLRESPLVELAEMLIGKGYELRIFDRNVEYARVHGANKEYIESKIPHVSSLLVSDLDEVVASSDVLVLGNGDELFVDLVNKTPSGKKLVDLVGFMPHTTTAQAEGICW 436
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430      


Chain B from PDB  Type:PROTEIN  Length:436
 aligned with ALGD_PSEAE | P11759 from UniProtKB/Swiss-Prot  Length:436

    Alignment length:436
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430      
           ALGD_PSEAE     1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDFGVGTNPEFLRESTAIKDYDFPPMTVIGELDKQTGDLLEEIYRELDAPIIRKTVEVAEMIKYTCNVWHAAKVTFANEIGNIAKAVGVDGREVMDVICQDHKLNLSRYYMRPGFAFGGSCLPKDVRALTYRASQLDVEHPMLGSLMRSNSNQVQKAFDLITSHDTRKVGLLGLSFKAGTDDLRESPLVELAEMLIGKGYELRIFDRNVEYARVHGANKEYIESKIPHVSSLLVSDLDEVVASSDVLVLGNGDELFVDLVNKTPSGKKLVDLVGFMPHTTTAQAEGICW 436
               SCOP domains d1mv8b2 B:1-202 GDP-mannose 6-dehydrogenase                                                                                                                                                               d1mv8b1 B:203-300 GDP-mannose 6-dehydrogenase, middle domain                                      d1mv8b3 B:301-436 GDP-mannose 6-dehydrogenase, GDP-binding domain                                                                        SCOP domains
               CATH domains 1mv8B01 B:1-202 NAD(P)-binding Rossmann-like Domain                                                                                                                                                       --------------------------------1mv8B03 B:235-436 NAD(P)-binding Rossmann-like Domain                                                                                                                                                      CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee....hhhhhhhhhhhh..eeeee..hhhhhhhhhh........hhhhhhhhhhhh..eeee.hhhhhhhh..eeee.............hhhhhhhhhhhhhhhhh....eeeee......hhhhhhhhhhhhhhhh......eeeee........hhhhhhhh...eeeee.hhhhhhhhhhhhh.....eeeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhh.....................hhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhh..eeeee.............hhhhhhhhhhhhh..eeeeehhhhhhhhhh..hhhhhhhhhhhhhh....hhhhhhhhh.eeee.....hhhhhhhh.....eeee............eee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1mv8 B   1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDFGVGTNPEFLRESTAIKDYDFPPMTVIGELDKQTGDLLEEIYRELDAPIIRKTVEVAEMIKYTCNVWHAAKVTFANEIGNIAKAVGVDGREVMDVICQDHKLNLSRYYMRPGFAFGGSCLPKDVRALTYRASQLDVEHPMLGSLMRSNSNQVQKAFDLITSHDTRKVGLLGLSFKAGTDDLRESPLVELAEMLIGKGYELRIFDRNVEYARVHGANKEYIESKIPHVSSLLVSDLDEVVASSDVLVLGNGDELFVDLVNKTPSGKKLVDLVGFMPHTTTAQAEGICW 436
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430      


Chain C from PDB  Type:PROTEIN  Length:436
 aligned with ALGD_PSEAE | P11759 from UniProtKB/Swiss-Prot  Length:436

    Alignment length:436
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430      
           ALGD_PSEAE     1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDFGVGTNPEFLRESTAIKDYDFPPMTVIGELDKQTGDLLEEIYRELDAPIIRKTVEVAEMIKYTCNVWHAAKVTFANEIGNIAKAVGVDGREVMDVICQDHKLNLSRYYMRPGFAFGGSCLPKDVRALTYRASQLDVEHPMLGSLMRSNSNQVQKAFDLITSHDTRKVGLLGLSFKAGTDDLRESPLVELAEMLIGKGYELRIFDRNVEYARVHGANKEYIESKIPHVSSLLVSDLDEVVASSDVLVLGNGDELFVDLVNKTPSGKKLVDLVGFMPHTTTAQAEGICW 436
               SCOP domains d1mv8c2 C:1-202 GDP-mannose 6-dehydrogenase                                                                                                                                                               d1mv8c1 C:203-300 GDP-mannose 6-dehydrogenase, middle domain                                      d1mv8c3 C:301-436 GDP-mannose 6-dehydrogenase, GDP-binding domain                                                                        SCOP domains
               CATH domains 1mv8C01 C:1-202 NAD(P)-binding Rossmann-like Domain                                                                                                                                                       --------------------------------1mv8C03 C:235-436 NAD(P)-binding Rossmann-like Domain                                                                                                                                                      CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee....hhhhhhhhhhhh..eeeee..hhhhhhhhhh........hhhhhhhhhhhh..eeee.hhhhhhhh..eeee.............hhhhhhhhhhhhhhhhh....eeeee......hhhhhhhhhhhhhhhh......eeeee........hhhhhhhh...eeeee.hhhhhhhhhhhhh.....eeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhh.....................hhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhh.....eeeee.............hhhhhhhhhhhhh..eeeeehhhhhhhhhh..hhhhhhhhhhhhhh....hhhhhhhhh.eeee...hhhhhhhhhh.....eeee............eee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1mv8 C   1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDFGVGTNPEFLRESTAIKDYDFPPMTVIGELDKQTGDLLEEIYRELDAPIIRKTVEVAEMIKYTCNVWHAAKVTFANEIGNIAKAVGVDGREVMDVICQDHKLNLSRYYMRPGFAFGGSCLPKDVRALTYRASQLDVEHPMLGSLMRSNSNQVQKAFDLITSHDTRKVGLLGLSFKAGTDDLRESPLVELAEMLIGKGYELRIFDRNVEYARVHGANKEYIESKIPHVSSLLVSDLDEVVASSDVLVLGNGDELFVDLVNKTPSGKKLVDLVGFMPHTTTAQAEGICW 436
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430      


Chain D from PDB  Type:PROTEIN  Length:436
 aligned with ALGD_PSEAE | P11759 from UniProtKB/Swiss-Prot  Length:436

    Alignment length:436
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430      
           ALGD_PSEAE     1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDFGVGTNPEFLRESTAIKDYDFPPMTVIGELDKQTGDLLEEIYRELDAPIIRKTVEVAEMIKYTCNVWHAAKVTFANEIGNIAKAVGVDGREVMDVICQDHKLNLSRYYMRPGFAFGGSCLPKDVRALTYRASQLDVEHPMLGSLMRSNSNQVQKAFDLITSHDTRKVGLLGLSFKAGTDDLRESPLVELAEMLIGKGYELRIFDRNVEYARVHGANKEYIESKIPHVSSLLVSDLDEVVASSDVLVLGNGDELFVDLVNKTPSGKKLVDLVGFMPHTTTAQAEGICW 436
               SCOP domains d1mv8d2 D:1-202 GDP-mannose 6-dehydrogenase                                                                                                                                                               d1mv8d1 D:203-300 GDP-mannose 6-dehydrogenase, middle domain                                      d1mv8d3 D:301-436 GDP-mannose 6-dehydrogenase, GDP-binding domain                                                                        SCOP domains
               CATH domains 1mv8D01 D:1-202 NAD(P)-binding Rossmann-like Domain                                                                                                                                                       --------------------------------1mv8D03 D:235-436 NAD(P)-binding Rossmann-like Domain                                                                                                                                                      CATH domains
           Pfam domains (1) UDPG_MGDP_dh_N-1mv8D05 D:1-190                                                                                                                                                                ------------UDPG_MGDP_dh-1mv8D01 D:203-300                                                                    ----------------UDPG_MGDP_dh_C-1mv8D09 D:317-423                                                                           ------------- Pfam domains (1)
           Pfam domains (2) UDPG_MGDP_dh_N-1mv8D06 D:1-190                                                                                                                                                                ------------UDPG_MGDP_dh-1mv8D02 D:203-300                                                                    ----------------UDPG_MGDP_dh_C-1mv8D10 D:317-423                                                                           ------------- Pfam domains (2)
           Pfam domains (3) UDPG_MGDP_dh_N-1mv8D07 D:1-190                                                                                                                                                                ------------UDPG_MGDP_dh-1mv8D03 D:203-300                                                                    ----------------UDPG_MGDP_dh_C-1mv8D11 D:317-423                                                                           ------------- Pfam domains (3)
           Pfam domains (4) UDPG_MGDP_dh_N-1mv8D08 D:1-190                                                                                                                                                                ------------UDPG_MGDP_dh-1mv8D04 D:203-300                                                                    ----------------UDPG_MGDP_dh_C-1mv8D12 D:317-423                                                                           ------------- Pfam domains (4)
         Sec.struct. author .eeeee....hhhhhhhhhhhh..eeeee..hhhhhhhhhh........hhhhhhhhhhhh..eeee.hhhhhhhh..eeee.............hhhhhhhhhhhhhhhh......eeee......hhhhhhhhhhhhhhhh.......eeee........hhhhhhhh...eeeee.hhhhhhhhhhhhh.....eeeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhh.....................hhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhh....eeeee.............hhhhhhhhhhhhh..eeeeehhhhhhhh....hhhhhhhhhhhhhh....hhhhhhhhh.eeee...hhhhhhhhhh.....eeee............eee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1mv8 D   1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDFGVGTNPEFLRESTAIKDYDFPPMTVIGELDKQTGDLLEEIYRELDAPIIRKTVEVAEMIKYTCNVWHAAKVTFANEIGNIAKAVGVDGREVMDVICQDHKLNLSRYYMRPGFAFGGSCLPKDVRALTYRASQLDVEHPMLGSLMRSNSNQVQKAFDLITSHDTRKVGLLGLSFKAGTDDLRESPLVELAEMLIGKGYELRIFDRNVEYARVHGANKEYIESKIPHVSSLLVSDLDEVVASSDVLVLGNGDELFVDLVNKTPSGKKLVDLVGFMPHTTTAQAEGICW 436
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 Classification and Annotation

(-) SCOP Domains  (3, 12)

Asymmetric Unit
(-)
Class: All alpha proteins (14657)
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (1, 8)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (3, 12)

Asymmetric Unit
(-)
Clan: 6PGD_C (47)
(-)
Clan: NADP_Rossmann (1239)
(-)
Clan: no clan defined [family: UDPG_MGDP_dh_C] (10)

(-) Gene Ontology  (8, 8)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (ALGD_PSEAE | P11759)
molecular function
    GO:0047919    GDP-mannose 6-dehydrogenase activity    Catalysis of the reaction: GDP-alpha-D-mannose + H(2)O + 2 NAD(+) = GDP-D-mannuronate + 3 H(+) + 2 NADH.
    GO:0051287    NAD binding    Interacting selectively and non-covalently with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD+, or the reduced form, NADH.
    GO:0003979    UDP-glucose 6-dehydrogenase activity    Catalysis of the reaction: H(2)O + 2 NAD(+) + UDP-alpha-D-glucose = 3 H(+) + 2 NADH + UDP-alpha-D-glucuronate.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0016616    oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor    Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group acts as a hydrogen or electron donor and reduces NAD+ or NADP.
biological process
    GO:0006065    UDP-glucuronate biosynthetic process    The chemical reactions and pathways resulting in the formation of UDP-glucuronate, a substance composed of glucuronic acid in glycosidic linkage with uridine diphosphate.
    GO:0042121    alginic acid biosynthetic process    The chemical reactions and pathways resulting in the formation of alginic acid, a hydrophilic polysaccharide occurring in, for example, the cell walls of brown algae (brown seaweeds).
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

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  1mv8
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  1.1.1.132
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ALGD_PSEAE | P11759: 1mfz 1muu

(-) Related Entries Specified in the PDB File

1mf2 C2221 FORM OF SEMET SUBSTITUTED GMD
1muu SEMET SUBSTITUTED GMD - P43 FORM. USED FOR MAD PHASING