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(-) Description

Title :  PARTIALLY REFINED 2.8 A CRYSTAL STRUCTURE OF GDP-MANNOSE DEHYDROGENASE FROM P. AERUGINOSA
 
Authors :  C. F. Snook, P. A. Tipton, L. J. Beamer
Date :  14 Aug 02  (Deposition) - 06 May 03  (Release) - 12 Nov 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.80
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Rossmann Fold, Domain-Swapped Dimer, Enzyme Complex With Cofactor And Product, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. F. Snook, P. A. Tipton, L. J. Beamer
The Crystal Structure Of Gdp-Mannose Dehydrogenase: A Key Enzyme In Alginate Biosynthesis Of P. Aeruginosa
Biochemistry V. 42 4658 2003
PubMed-ID: 12705829  |  Reference-DOI: 10.1021/BI027328K
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - GDP-MANNOSE 6-DEHYDROGENASE
    Chains: A, B, C, D
    EC Number: 1.1.1.132
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET-3A
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: ALGD
    Organism Scientific: PSEUDOMONAS AERUGINOSA
    Organism Taxid: 287
    Synonym: GMD

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 40)

Asymmetric Unit (2, 40)
No.NameCountTypeFull Name
1GDX4Ligand/IonGUANOSINE 5'-(TRIHYDROGEN DIPHOSPHATE), P'-D-MANNOPYRANOSYL ESTER
2MSE36Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (2, 20)
No.NameCountTypeFull Name
1GDX2Ligand/IonGUANOSINE 5'-(TRIHYDROGEN DIPHOSPHATE), P'-D-MANNOPYRANOSYL ESTER
2MSE18Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (2, 20)
No.NameCountTypeFull Name
1GDX2Ligand/IonGUANOSINE 5'-(TRIHYDROGEN DIPHOSPHATE), P'-D-MANNOPYRANOSYL ESTER
2MSE18Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU C:157 , PHE C:158 , LEU C:159 , ARG C:160 , GLU C:161 , LYS C:210 , ASN C:214 , HIS C:217 , VAL C:221 , ASN C:225 , TYR D:256 , TYR D:257 , MSE D:258 , ARG D:259 , PHE D:262 , PHE D:264 , GLY D:265 , CYS D:268 , LEU D:269 , PHE D:323 , LYS D:324 , HOH D:510BINDING SITE FOR RESIDUE GDX D 501
2AC2SOFTWARETYR C:256 , TYR C:257 , MSE C:258 , ARG C:259 , GLY C:261 , PHE C:262 , PHE C:264 , GLY C:265 , CYS C:268 , PHE C:323 , LYS C:324 , TYR D:10 , GLU D:157 , PHE D:158 , LEU D:159 , ARG D:160 , GLU D:161 , LYS D:210 , ASN D:214 , HIS D:217 , VAL D:221 , ASN D:225 , HOH D:519BINDING SITE FOR RESIDUE GDX D 502
3AC3SOFTWAREGLU A:157 , PHE A:158 , LEU A:159 , ARG A:160 , GLU A:161 , LYS A:210 , ASN A:214 , HIS A:217 , VAL A:221 , ASN A:225 , LEU B:251 , TYR B:256 , TYR B:257 , MSE B:258 , ARG B:259 , PHE B:262 , PHE B:264 , GLY B:265 , CYS B:268 , LEU B:269 , PHE B:323 , LYS B:324 , HOH B:506 , HOH B:507BINDING SITE FOR RESIDUE GDX B 503
4AC4SOFTWARETYR A:256 , TYR A:257 , MSE A:258 , ARG A:259 , GLY A:261 , PHE A:262 , PHE A:264 , GLY A:265 , CYS A:268 , LEU A:269 , PHE A:323 , LYS A:324 , GLU B:157 , PHE B:158 , LEU B:159 , ARG B:160 , GLU B:161 , LYS B:210 , ASN B:214 , HIS B:217 , VAL B:221 , ASN B:225BINDING SITE FOR RESIDUE GDX B 504

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1MFZ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1MFZ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1MFZ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1MFZ)

(-) Exons   (0, 0)

(no "Exon" information available for 1MFZ)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:436
 aligned with ALGD_PSEAE | P11759 from UniProtKB/Swiss-Prot  Length:436

    Alignment length:436
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430      
           ALGD_PSEAE     1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDFGVGTNPEFLRESTAIKDYDFPPMTVIGELDKQTGDLLEEIYRELDAPIIRKTVEVAEMIKYTCNVWHAAKVTFANEIGNIAKAVGVDGREVMDVICQDHKLNLSRYYMRPGFAFGGSCLPKDVRALTYRASQLDVEHPMLGSLMRSNSNQVQKAFDLITSHDTRKVGLLGLSFKAGTDDLRESPLVELAEMLIGKGYELRIFDRNVEYARVHGANKEYIESKIPHVSSLLVSDLDEVVASSDVLVLGNGDELFVDLVNKTPSGKKLVDLVGFMPHTTTAQAEGICW 436
               SCOP domains d1mfza2 A:1-202 GDP-mannose 6-dehydrogenase                                                                                                                                                               d1mfza1 A:203-300 GDP-mannose 6-dehydrogenase, middle domain                                      d1mfza3 A:301-436 GDP-mannose 6-dehydrogenase, GDP-binding domain                                                                        SCOP domains
               CATH domains -1mfzA01 A:2-202 NAD(P)-binding Rossmann-like Domain                                                                                                                                                      --------------------------------1mfzA03 A:235-436 NAD(P)-binding Rossmann-like Domain                                                                                                                                                      CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee..hhhhhhhhhhhhh...eeeee..hhhhhhhhhh........hhhhhhhhhhhh..eeee.hhhhhhhh..eeee.............hhhhhhhhhhhhhhhhhh....eeee......hhhhhhhhhhhhhhhh.......eeee........hhhhhhhh...eeeee.hhhhhhhhhhhhhh....eeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhh.....................hhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhh.....eeeee.............hhhhhhhhhhhhh..eeeeehhhhhhhhhhh.hhhhhhhhhhhhhh....hhhhhhhh..eeee....hhhhhhhhh.....eeee............eee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1mfz A   1 mRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDFGVGTNPEFLRESTAIKDYDFPPmTVIGELDKQTGDLLEEIYRELDAPIIRKTVEVAEmIKYTCNVWHAAKVTFANEIGNIAKAVGVDGREVmDVICQDHKLNLSRYYmRPGFAFGGSCLPKDVRALTYRASQLDVEHPmLGSLmRSNSNQVQKAFDLITSHDTRKVGLLGLSFKAGTDDLRESPLVELAEmLIGKGYELRIFDRNVEYARVHGANKEYIESKIPHVSSLLVSDLDEVVASSDVLVLGNGDELFVDLVNKTPSGKKLVDLVGFmPHTTTAQAEGICW 436
                            |       10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170  |    180       190       200       210       220       230       240 |     250       260       270       280       290   |   300       310       320       330       340|      350       360       370       380       390       400       410       420  |    430      
                            |                                                                                                                                                                         173-MSE                            208-MSE                           242-MSE         258-MSE                        289-MSE|                                            341-MSE                                                                           423-MSE         
                            1-MSE                                                                                                                                                                                                                                                                                              294-MSE                                                                                                                                          


Chain B from PDB  Type:PROTEIN  Length:436
 aligned with ALGD_PSEAE | P11759 from UniProtKB/Swiss-Prot  Length:436

    Alignment length:436
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430      
           ALGD_PSEAE     1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDFGVGTNPEFLRESTAIKDYDFPPMTVIGELDKQTGDLLEEIYRELDAPIIRKTVEVAEMIKYTCNVWHAAKVTFANEIGNIAKAVGVDGREVMDVICQDHKLNLSRYYMRPGFAFGGSCLPKDVRALTYRASQLDVEHPMLGSLMRSNSNQVQKAFDLITSHDTRKVGLLGLSFKAGTDDLRESPLVELAEMLIGKGYELRIFDRNVEYARVHGANKEYIESKIPHVSSLLVSDLDEVVASSDVLVLGNGDELFVDLVNKTPSGKKLVDLVGFMPHTTTAQAEGICW 436
               SCOP domains d1mfzb2 B:1-202 GDP-mannose 6-dehydrogenase                                                                                                                                                               d1mfzb1 B:203-300 GDP-mannose 6-dehydrogenase, middle domain                                      d1mfzb3 B:301-436 GDP-mannose 6-dehydrogenase, GDP-binding domain                                                                        SCOP domains
               CATH domains -1mfzB01 B:2-202 NAD(P)-binding Rossmann-like Domain                                                                                                                                                      --------------------------------1mfzB03 B:235-436 NAD(P)-binding Rossmann-like Domain                                                                                                                                                      CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee..hhhhhhhhhhhhhh..eeeee..hhhhhhhhhh........hhhhhhhhhhhh..eeee.hhhhhhhh..eeee.............hhhhhhhhhhhhhhhhhh....eeee......hhhhhhhhhhhhhhhh.......eeee........hhhhhhhh...eeeee.hhhhhhhhhhhhh.....eeeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhh.....................hhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhh.....eeeee.............hhhhhhhhhhhhh..eeeeehhhhhhhh....hhhhhhhhhhhhhh....hhhhhhhh..eeee...hhhhhhhhhh.....eeee............eee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1mfz B   1 mRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDFGVGTNPEFLRESTAIKDYDFPPmTVIGELDKQTGDLLEEIYRELDAPIIRKTVEVAEmIKYTCNVWHAAKVTFANEIGNIAKAVGVDGREVmDVICQDHKLNLSRYYmRPGFAFGGSCLPKDVRALTYRASQLDVEHPmLGSLmRSNSNQVQKAFDLITSHDTRKVGLLGLSFKAGTDDLRESPLVELAEmLIGKGYELRIFDRNVEYARVHGANKEYIESKIPHVSSLLVSDLDEVVASSDVLVLGNGDELFVDLVNKTPSGKKLVDLVGFmPHTTTAQAEGICW 436
                            |       10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170  |    180       190       200       210       220       230       240 |     250       260       270       280       290   |   300       310       320       330       340|      350       360       370       380       390       400       410       420  |    430      
                            1-MSE                                                                                                                                                                     173-MSE                            208-MSE                           242-MSE         258-MSE                        289-MSE|                                            341-MSE                                                                           423-MSE         
                                                                                                                                                                                                                                                                                                                               294-MSE                                                                                                                                          


Chain C from PDB  Type:PROTEIN  Length:436
 aligned with ALGD_PSEAE | P11759 from UniProtKB/Swiss-Prot  Length:436

    Alignment length:436
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430      
           ALGD_PSEAE     1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDFGVGTNPEFLRESTAIKDYDFPPMTVIGELDKQTGDLLEEIYRELDAPIIRKTVEVAEMIKYTCNVWHAAKVTFANEIGNIAKAVGVDGREVMDVICQDHKLNLSRYYMRPGFAFGGSCLPKDVRALTYRASQLDVEHPMLGSLMRSNSNQVQKAFDLITSHDTRKVGLLGLSFKAGTDDLRESPLVELAEMLIGKGYELRIFDRNVEYARVHGANKEYIESKIPHVSSLLVSDLDEVVASSDVLVLGNGDELFVDLVNKTPSGKKLVDLVGFMPHTTTAQAEGICW 436
               SCOP domains d1mfzc2 C:1-202 GDP-mannose 6-dehydrogenase                                                                                                                                                               d1mfzc1 C:203-300 GDP-mannose 6-dehydrogenase, middle domain                                      d1mfzc3 C:301-436 GDP-mannose 6-dehydrogenase, GDP-binding domain                                                                        SCOP domains
               CATH domains -1mfzC01 C:2-202 NAD(P)-binding Rossmann-like Domain                                                                                                                                                      --------------------------------1mfzC03 C:235-436 NAD(P)-binding Rossmann-like Domain                                                                                                                                                      CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee....hhhhhhhhhhh...eeeee..hhhhhhhhhh........hhhhhhhhhhhh..eeee.hhhhhhhh..eeee.............hhhhhhhhhhhhhhhhhh....eeee......hhhhhhhhhhhhhhhh.......eeee........hhhhhhhh...eeeee.hhhhhhhhhhhhh.....eeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhh...................hhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhh.....eeeee.............hhhhhhhhhhhhh..eeeeehhhhhhhhh...hhhhhhhhhhhhhh....hhhhhhhh..eeee.....hhhhhhhh.....eeee............eee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1mfz C   1 mRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDFGVGTNPEFLRESTAIKDYDFPPmTVIGELDKQTGDLLEEIYRELDAPIIRKTVEVAEmIKYTCNVWHAAKVTFANEIGNIAKAVGVDGREVmDVICQDHKLNLSRYYmRPGFAFGGSCLPKDVRALTYRASQLDVEHPmLGSLmRSNSNQVQKAFDLITSHDTRKVGLLGLSFKAGTDDLRESPLVELAEmLIGKGYELRIFDRNVEYARVHGANKEYIESKIPHVSSLLVSDLDEVVASSDVLVLGNGDELFVDLVNKTPSGKKLVDLVGFmPHTTTAQAEGICW 436
                            |       10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170  |    180       190       200       210       220       230       240 |     250       260       270       280       290   |   300       310       320       330       340|      350       360       370       380       390       400       410       420  |    430      
                            1-MSE                                                                                                                                                                     173-MSE                            208-MSE                           242-MSE         258-MSE                        289-MSE|                                            341-MSE                                                                           423-MSE         
                                                                                                                                                                                                                                                                                                                               294-MSE                                                                                                                                          


Chain D from PDB  Type:PROTEIN  Length:436
 aligned with ALGD_PSEAE | P11759 from UniProtKB/Swiss-Prot  Length:436

    Alignment length:436
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430      
           ALGD_PSEAE     1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDFGVGTNPEFLRESTAIKDYDFPPMTVIGELDKQTGDLLEEIYRELDAPIIRKTVEVAEMIKYTCNVWHAAKVTFANEIGNIAKAVGVDGREVMDVICQDHKLNLSRYYMRPGFAFGGSCLPKDVRALTYRASQLDVEHPMLGSLMRSNSNQVQKAFDLITSHDTRKVGLLGLSFKAGTDDLRESPLVELAEMLIGKGYELRIFDRNVEYARVHGANKEYIESKIPHVSSLLVSDLDEVVASSDVLVLGNGDELFVDLVNKTPSGKKLVDLVGFMPHTTTAQAEGICW 436
               SCOP domains d1mfzd2 D:1-202 GDP-mannose 6-dehydrogenase                                                                                                                                                               d1mfzd1 D:203-300 GDP-mannose 6-dehydrogenase, middle domain                                      d1mfzd3 D:301-436 GDP-mannose 6-dehydrogenase, GDP-binding domain                                                                        SCOP domains
               CATH domains -1mfzD01 D:2-202 NAD(P)-binding Rossmann-like Domain                                                                                                                                                      --------------------------------1mfzD03 D:235-436 NAD(P)-binding Rossmann-like Domain                                                                                                                                                      CATH domains
           Pfam domains (1) UDPG_MGDP_dh_N-1mfzD05 D:1-190                                                                                                                                                                ------------UDPG_MGDP_dh-1mfzD01 D:203-300                                                                    ----------------UDPG_MGDP_dh_C-1mfzD09 D:317-423                                                                           ------------- Pfam domains (1)
           Pfam domains (2) UDPG_MGDP_dh_N-1mfzD06 D:1-190                                                                                                                                                                ------------UDPG_MGDP_dh-1mfzD02 D:203-300                                                                    ----------------UDPG_MGDP_dh_C-1mfzD10 D:317-423                                                                           ------------- Pfam domains (2)
           Pfam domains (3) UDPG_MGDP_dh_N-1mfzD07 D:1-190                                                                                                                                                                ------------UDPG_MGDP_dh-1mfzD03 D:203-300                                                                    ----------------UDPG_MGDP_dh_C-1mfzD11 D:317-423                                                                           ------------- Pfam domains (3)
           Pfam domains (4) UDPG_MGDP_dh_N-1mfzD08 D:1-190                                                                                                                                                                ------------UDPG_MGDP_dh-1mfzD04 D:203-300                                                                    ----------------UDPG_MGDP_dh_C-1mfzD12 D:317-423                                                                           ------------- Pfam domains (4)
         Sec.struct. author .eeeee..hhhhhhhhhhhhhh..eeeee..hhhhhhhhhh........hhhhhhhhhhhh..eeee.hhhhhhhh..eeee.............hhhhhhhhhhhhhhh.......eeee......hhhhhhhhhhhhhhhh.......eeee........hhhhhhhh...eeeee.hhhhhhhhhhhhh.....eeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhh.....................hhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhh.....eeeee.............hhhhhhhhhhhhh..eeeeehhhhhhhh....hhhhhhhhhhhhhh....hhhhhhhhh.eeee...hhhhhhhhhh.....eeee............eee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1mfz D   1 mRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDFGVGTNPEFLRESTAIKDYDFPPmTVIGELDKQTGDLLEEIYRELDAPIIRKTVEVAEmIKYTCNVWHAAKVTFANEIGNIAKAVGVDGREVmDVICQDHKLNLSRYYmRPGFAFGGSCLPKDVRALTYRASQLDVEHPmLGSLmRSNSNQVQKAFDLITSHDTRKVGLLGLSFKAGTDDLRESPLVELAEmLIGKGYELRIFDRNVEYARVHGANKEYIESKIPHVSSLLVSDLDEVVASSDVLVLGNGDELFVDLVNKTPSGKKLVDLVGFmPHTTTAQAEGICW 436
                            |       10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170  |    180       190       200       210       220       230       240 |     250       260       270       280       290   |   300       310       320       330       340|      350       360       370       380       390       400       410       420  |    430      
                            1-MSE                                                                                                                                                                     173-MSE                            208-MSE                           242-MSE         258-MSE                        289-MSE|                                            341-MSE                                                                           423-MSE         
                                                                                                                                                                                                                                                                                                                               294-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (3, 12)

Asymmetric Unit
(-)
Class: All alpha proteins (14657)
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (1, 8)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (3, 12)

Asymmetric Unit
(-)
Clan: 6PGD_C (47)
(-)
Clan: NADP_Rossmann (1239)
(-)
Clan: no clan defined [family: UDPG_MGDP_dh_C] (10)

(-) Gene Ontology  (8, 8)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (ALGD_PSEAE | P11759)
molecular function
    GO:0047919    GDP-mannose 6-dehydrogenase activity    Catalysis of the reaction: GDP-alpha-D-mannose + H(2)O + 2 NAD(+) = GDP-D-mannuronate + 3 H(+) + 2 NADH.
    GO:0051287    NAD binding    Interacting selectively and non-covalently with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD+, or the reduced form, NADH.
    GO:0003979    UDP-glucose 6-dehydrogenase activity    Catalysis of the reaction: H(2)O + 2 NAD(+) + UDP-alpha-D-glucose = 3 H(+) + 2 NADH + UDP-alpha-D-glucuronate.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0016616    oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor    Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group acts as a hydrogen or electron donor and reduces NAD+ or NADP.
biological process
    GO:0006065    UDP-glucuronate biosynthetic process    The chemical reactions and pathways resulting in the formation of UDP-glucuronate, a substance composed of glucuronic acid in glycosidic linkage with uridine diphosphate.
    GO:0042121    alginic acid biosynthetic process    The chemical reactions and pathways resulting in the formation of alginic acid, a hydrophilic polysaccharide occurring in, for example, the cell walls of brown algae (brown seaweeds).
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

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Asymmetric Unit
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        ALGD_PSEAE | P11759: 1muu 1mv8

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