1MUU - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Title :   2.0 A CRYSTAL STRUCTURE OF GDP-MANNOSE DEHYDROGENASE

Authors :   C. F. Snook, P. A. Tipton, L. J. Beamer

Date :   24 Sep 02 (Deposition) - 06 May 03 (Release) - 12 Nov 14 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.02

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: C,D  (1x)

Keywords :   Rossmann Fold; Domain-Swapped Dimer; Enzyme Complex With Cofactor And Product, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   C. F. Snook, P. A. Tipton, L. J. Beamer
Crystal Structure Of Gdp-Mannose Dehydrogenase: A Key Enzym Of Alginate Biosynthesis In P. Aeruginosa
Biochemistry V. 42 4658 2003
PubMed-ID: 12705829 | Reference-DOI: 10.1021/BI027328K
(for further references see the PDB file header)

Molecule 1 - GDP-MANNOSE 6-DEHYDROGENASE
	Chains	:	A, B, C, D
	EC Number	:	1.1.1.132
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21(DE3)
	Expression System Plasmid	:	PET-3A
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Gene	:	ALGD
	Organism Scientific	:	PSEUDOMONAS AERUGINOSA
	Organism Taxid	:	287
	Synonym	:	GMD

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A	B
Biological Unit 2 (1x)	:			C	D

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (4, 45)

No.	Name	Count	Type	Full Name
1	GDX	4	Ligand/Ion	GUANOSINE 5'-(TRIHYDROGEN DIPHOSPHATE), P'-D-MANNOPYRANOSYL ESTER
2	MSE	36	Mod. Amino Acid	SELENOMETHIONINE
3	NAD	4	Ligand/Ion	NICOTINAMIDE-ADENINE-DINUCLEOTIDE
4	SUC	1	Ligand/Ion	SUCROSE

Biological Unit 1 (3, 22)

No.	Name	Count	Type	Full Name
1	GDX	2	Ligand/Ion	GUANOSINE 5'-(TRIHYDROGEN DIPHOSPHATE), P'-D-MANNOPYRANOSYL ESTER
2	MSE	18	Mod. Amino Acid	SELENOMETHIONINE
3	NAD	2	Ligand/Ion	NICOTINAMIDE-ADENINE-DINUCLEOTIDE
4	SUC	-1	Ligand/Ion	SUCROSE

Biological Unit 2 (4, 23)

No.	Name	Count	Type	Full Name
1	GDX	2	Ligand/Ion	GUANOSINE 5'-(TRIHYDROGEN DIPHOSPHATE), P'-D-MANNOPYRANOSYL ESTER
2	MSE	18	Mod. Amino Acid	SELENOMETHIONINE
3	NAD	2	Ligand/Ion	NICOTINAMIDE-ADENINE-DINUCLEOTIDE
4	SUC	1	Ligand/Ion	SUCROSE

Asymmetric Unit (9, 9)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	LYS C:315 , ALA C:389 , SER C:391 , ASP C:392 , SER C:412 , GLY C:413 , LYS C:414 , HOH C:1215 , HOH C:1232 , LYS D:366	BINDING SITE FOR RESIDUE SUC C 1009
2	AC2	SOFTWARE	GLY A:7 , GLY A:9 , TYR A:10 , VAL A:11 , ASP A:30 , VAL A:31 , LYS A:35 , CYS A:83 , VAL A:84 , GLY A:85 , THR A:86 , TYR A:98 , THR A:101 , VAL A:102 , GLU A:105 , SER A:123 , THR A:124 , GLU A:157 , HOH A:1015 , HOH A:1044 , HOH A:1051 , HOH A:1058 , HOH A:1131 , LYS B:271 , ARG B:331 , HOH B:1116	BINDING SITE FOR RESIDUE NAD A 1001
3	AC3	SOFTWARE	LYS A:271 , ARG A:331 , GLY B:7 , GLY B:9 , TYR B:10 , VAL B:11 , VAL B:29 , ASP B:30 , VAL B:31 , LYS B:35 , CYS B:83 , VAL B:84 , GLY B:85 , THR B:86 , TYR B:98 , THR B:101 , VAL B:102 , GLU B:105 , SER B:123 , THR B:124 , GLU B:157 , HOH B:1014 , HOH B:1036 , HOH B:1083 , HOH B:1110 , HOH B:1113 , HOH B:1191 , HOH B:1215	BINDING SITE FOR RESIDUE NAD B 1002
4	AC4	SOFTWARE	GLY C:7 , GLY C:9 , TYR C:10 , VAL C:11 , VAL C:29 , ASP C:30 , VAL C:31 , LYS C:35 , CYS C:83 , VAL C:84 , GLY C:85 , THR C:86 , THR C:101 , VAL C:102 , GLU C:105 , SER C:123 , THR C:124 , GLU C:157 , HOH C:1024 , HOH C:1048 , HOH C:1070 , HOH C:1073 , HOH C:1103 , HOH C:1126 , HOH C:1250 , LYS D:271 , ARG D:331	BINDING SITE FOR RESIDUE NAD C 1003
5	AC5	SOFTWARE	LYS C:271 , ARG C:331 , GLY D:7 , GLY D:9 , TYR D:10 , VAL D:11 , VAL D:29 , ASP D:30 , LYS D:35 , CYS D:83 , VAL D:84 , GLY D:85 , THR D:86 , TYR D:98 , THR D:101 , VAL D:102 , GLU D:105 , SER D:123 , THR D:124 , GLU D:157 , HOH D:1024 , HOH D:1054 , HOH D:1056 , HOH D:1070 , HOH D:1079 , HOH D:1086 , HOH D:1127 , HOH D:1251	BINDING SITE FOR RESIDUE NAD D 1004
6	AC6	SOFTWARE	GLU A:157 , PHE A:158 , LEU A:159 , ARG A:160 , GLU A:161 , LYS A:210 , ASN A:214 , HIS A:217 , VAL A:221 , ASN A:225 , TYR B:256 , TYR B:257 , MSE B:258 , ARG B:259 , PHE B:262 , PHE B:264 , GLY B:265 , CYS B:268 , LEU B:269 , PHE B:323 , LYS B:324 , HOH B:1028 , HOH B:1043 , HOH B:1057 , HOH B:1082 , HOH B:1168	BINDING SITE FOR RESIDUE GDX B 1005
7	AC7	SOFTWARE	TYR A:256 , TYR A:257 , MSE A:258 , ARG A:259 , GLY A:261 , PHE A:262 , PHE A:264 , GLY A:265 , CYS A:268 , PHE A:323 , LYS A:324 , HOH A:1017 , GLU B:157 , PHE B:158 , LEU B:159 , ARG B:160 , GLU B:161 , LYS B:210 , ASN B:214 , HIS B:217 , VAL B:221 , ASN B:225 , HOH B:1014 , HOH B:1017 , HOH B:1032 , HOH B:1111 , HOH B:1143	BINDING SITE FOR RESIDUE GDX B 1006
8	AC8	SOFTWARE	GLU C:157 , PHE C:158 , LEU C:159 , ARG C:160 , GLU C:161 , LYS C:210 , ASN C:214 , HIS C:217 , VAL C:221 , ASN C:225 , HOH C:1024 , TYR D:256 , TYR D:257 , MSE D:258 , ARG D:259 , PHE D:262 , PHE D:264 , GLY D:265 , CYS D:268 , LEU D:269 , PHE D:323 , LYS D:324 , HOH D:1038 , HOH D:1048 , HOH D:1065 , HOH D:1130	BINDING SITE FOR RESIDUE GDX D 1007
9	AC9	SOFTWARE	TYR C:256 , TYR C:257 , MSE C:258 , ARG C:259 , PHE C:262 , PHE C:264 , GLY C:265 , CYS C:268 , PHE C:323 , LYS C:324 , HOH C:1139 , GLU D:157 , PHE D:158 , LEU D:159 , ARG D:160 , GLU D:161 , LYS D:210 , ASN D:214 , HIS D:217 , VAL D:221 , ASN D:225 , HOH D:1024 , HOH D:1059 , HOH D:1073 , HOH D:1085 , HOH D:1089	BINDING SITE FOR RESIDUE GDX D 1008

(no "SS Bond" information available for 1MUU)

(no "Cis Peptide Bond" information available for 1MUU)

(no "SAP(SNP)/Variant" information available for 1MUU)

(no "PROSITE Motif" information available for 1MUU)

(no "Exon" information available for 1MUU)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:436
 aligned with ALGD_PSEAE | P11759 from UniProtKB/Swiss-Prot  Length:436

    Alignment length:436
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430      
           ALGD_PSEAE     1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDFGVGTNPEFLRESTAIKDYDFPPMTVIGELDKQTGDLLEEIYRELDAPIIRKTVEVAEMIKYTCNVWHAAKVTFANEIGNIAKAVGVDGREVMDVICQDHKLNLSRYYMRPGFAFGGSCLPKDVRALTYRASQLDVEHPMLGSLMRSNSNQVQKAFDLITSHDTRKVGLLGLSFKAGTDDLRESPLVELAEMLIGKGYELRIFDRNVEYARVHGANKEYIESKIPHVSSLLVSDLDEVVASSDVLVLGNGDELFVDLVNKTPSGKKLVDLVGFMPHTTTAQAEGICW 436
               SCOP domains d1muua2 A:1-202 GDP-mannose 6-dehydrogenase                                                                                                                                                               d1muua1 A:203-300 GDP-mannose 6-dehydrogenase, middle domain                                      d1muua3 A:301-436 GDP-mannose 6-dehydrogenase, GDP-binding domain                                                                        SCOP domains
               CATH domains -1muuA01 A:2-202 NAD(P)-binding Rossmann-like Domain                                                                                                                                                      --------------------------------1muuA03 A:235-436 NAD(P)-binding Rossmann-like Domain                                                                                                                                                      CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee....hhhhhhhhhhhh..eeeee..hhhhhhhhhh........hhhhhhhhhhhh..eeee.hhhhhhhh..eeee.............hhhhhhhhhhhhhhhhhh....eeee......hhhhhhhhhhhhhhhh.......eeee........hhhhhhhh...eeeee.hhhhhhhhhhhhh.....eeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhh.....................hhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhh.....eeeee.............hhhhhhhhhhhhh..eeeeehhhhhhhhhh..hhhhhhhhhhhhhh....hhhhhhhhh.eeee...hhhhhhhhhh.....eeee............eee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1muu A   1 mRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDFGVGTNPEFLRESTAIKDYDFPPmTVIGELDKQTGDLLEEIYRELDAPIIRKTVEVAEmIKYTCNVWHAAKVTFANEIGNIAKAVGVDGREVmDVICQDHKLNLSRYYmRPGFAFGGSCLPKDVRALTYRASQLDVEHPmLGSLmRSNSNQVQKAFDLITSHDTRKVGLLGLSFKAGTDDLRESPLVELAEmLIGKGYELRIFDRNVEYARVHGANKEYIESKIPHVSSLLVSDLDEVVASSDVLVLGNGDELFVDLVNKTPSGKKLVDLVGFmPHTTTAQAEGICW 436
                            |       10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170  |    180       190       200       210       220       230       240 |     250       260       270       280       290   |   300       310       320       330       340|      350       360       370       380       390       400       410       420  |    430      
                            |                                                                                                                                                                         173-MSE                            208-MSE                           242-MSE         258-MSE                        289-MSE|                                            341-MSE                                                                           423-MSE         
                            1-MSE                                                                                                                                                                                                                                                                                              294-MSE

Chain B from PDB  Type:PROTEIN  Length:436
 aligned with ALGD_PSEAE | P11759 from UniProtKB/Swiss-Prot  Length:436

    Alignment length:436
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430      
           ALGD_PSEAE     1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDFGVGTNPEFLRESTAIKDYDFPPMTVIGELDKQTGDLLEEIYRELDAPIIRKTVEVAEMIKYTCNVWHAAKVTFANEIGNIAKAVGVDGREVMDVICQDHKLNLSRYYMRPGFAFGGSCLPKDVRALTYRASQLDVEHPMLGSLMRSNSNQVQKAFDLITSHDTRKVGLLGLSFKAGTDDLRESPLVELAEMLIGKGYELRIFDRNVEYARVHGANKEYIESKIPHVSSLLVSDLDEVVASSDVLVLGNGDELFVDLVNKTPSGKKLVDLVGFMPHTTTAQAEGICW 436
               SCOP domains d1muub2 B:1-202 GDP-mannose 6-dehydrogenase                                                                                                                                                               d1muub1 B:203-300 GDP-mannose 6-dehydrogenase, middle domain                                      d1muub3 B:301-436 GDP-mannose 6-dehydrogenase, GDP-binding domain                                                                        SCOP domains
               CATH domains -1muuB01 B:2-202 NAD(P)-binding Rossmann-like Domain                                                                                                                                                      --------------------------------1muuB03 B:235-436 NAD(P)-binding Rossmann-like Domain                                                                                                                                                      CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee....hhhhhhhhhhhh..eeeee..hhhhhhhhhh........hhhhhhhhhhhh..eeee.hhhhhhhh..eeee.............hhhhhhhhhhhhhhhhhh...eeeee......hhhhhhhhhhhhhhhh......eeeee........hhhhhhhh...eeeee.hhhhhhhhhhhhh.....eeeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhh.....................hhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhh..eeeee.............hhhhhhhhhhhhh..eeeeehhhhhhhhhh..hhhhhhhhhhhhhh....hhhhhhhhh.eeee...hhhhhhhhhh.....eeee............eee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1muu B   1 mRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDFGVGTNPEFLRESTAIKDYDFPPmTVIGELDKQTGDLLEEIYRELDAPIIRKTVEVAEmIKYTCNVWHAAKVTFANEIGNIAKAVGVDGREVmDVICQDHKLNLSRYYmRPGFAFGGSCLPKDVRALTYRASQLDVEHPmLGSLmRSNSNQVQKAFDLITSHDTRKVGLLGLSFKAGTDDLRESPLVELAEmLIGKGYELRIFDRNVEYARVHGANKEYIESKIPHVSSLLVSDLDEVVASSDVLVLGNGDELFVDLVNKTPSGKKLVDLVGFmPHTTTAQAEGICW 436
                            |       10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170  |    180       190       200       210       220       230       240 |     250       260       270       280       290   |   300       310       320       330       340|      350       360       370       380       390       400       410       420  |    430      
                            1-MSE                                                                                                                                                                     173-MSE                            208-MSE                           242-MSE         258-MSE                        289-MSE|                                            341-MSE                                                                           423-MSE         
                                                                                                                                                                                                                                                                                                                               294-MSE

Chain C from PDB  Type:PROTEIN  Length:436
 aligned with ALGD_PSEAE | P11759 from UniProtKB/Swiss-Prot  Length:436

    Alignment length:436
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430      
           ALGD_PSEAE     1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDFGVGTNPEFLRESTAIKDYDFPPMTVIGELDKQTGDLLEEIYRELDAPIIRKTVEVAEMIKYTCNVWHAAKVTFANEIGNIAKAVGVDGREVMDVICQDHKLNLSRYYMRPGFAFGGSCLPKDVRALTYRASQLDVEHPMLGSLMRSNSNQVQKAFDLITSHDTRKVGLLGLSFKAGTDDLRESPLVELAEMLIGKGYELRIFDRNVEYARVHGANKEYIESKIPHVSSLLVSDLDEVVASSDVLVLGNGDELFVDLVNKTPSGKKLVDLVGFMPHTTTAQAEGICW 436
               SCOP domains d1muuc2 C:1-202 GDP-mannose 6-dehydrogenase                                                                                                                                                               d1muuc1 C:203-300 GDP-mannose 6-dehydrogenase, middle domain                                      d1muuc3 C:301-436 GDP-mannose 6-dehydrogenase, GDP-binding domain                                                                        SCOP domains
               CATH domains -1muuC01 C:2-202 NAD(P)-binding Rossmann-like Domain                                                                                                                                                      --------------------------------1muuC03 C:235-436 NAD(P)-binding Rossmann-like Domain                                                                                                                                                      CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee....hhhhhhhhhhhh..eeeee..hhhhhhhhhh........hhhhhhhhhhhh..eeee.hhhhhhhh..eeee.............hhhhhhhhhhhhhhhhhh...eeeee......hhhhhhhhhhhhhhhh......eeeee........hhhhhhhh...eeeee.hhhhhhhhhhhhh.....eeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhh.....................hhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhh.....eeeee.............hhhhhhhhhhhhh..eeeeehhhhhhhhhhh.hhhhhhhhhhhhhh....hhhhhhhhh.eeee...hhhhhhhhhh.....eeee............eee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1muu C   1 mRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDFGVGTNPEFLRESTAIKDYDFPPmTVIGELDKQTGDLLEEIYRELDAPIIRKTVEVAEmIKYTCNVWHAAKVTFANEIGNIAKAVGVDGREVmDVICQDHKLNLSRYYmRPGFAFGGSCLPKDVRALTYRASQLDVEHPmLGSLmRSNSNQVQKAFDLITSHDTRKVGLLGLSFKAGTDDLRESPLVELAEmLIGKGYELRIFDRNVEYARVHGANKEYIESKIPHVSSLLVSDLDEVVASSDVLVLGNGDELFVDLVNKTPSGKKLVDLVGFmPHTTTAQAEGICW 436
                            |       10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170  |    180       190       200       210       220       230       240 |     250       260       270       280       290   |   300       310       320       330       340|      350       360       370       380       390       400       410       420  |    430      
                            1-MSE                                                                                                                                                                     173-MSE                            208-MSE                           242-MSE         258-MSE                        289-MSE|                                            341-MSE                                                                           423-MSE         
                                                                                                                                                                                                                                                                                                                               294-MSE

Chain D from PDB  Type:PROTEIN  Length:436
 aligned with ALGD_PSEAE | P11759 from UniProtKB/Swiss-Prot  Length:436

    Alignment length:436
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430      
           ALGD_PSEAE     1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDFGVGTNPEFLRESTAIKDYDFPPMTVIGELDKQTGDLLEEIYRELDAPIIRKTVEVAEMIKYTCNVWHAAKVTFANEIGNIAKAVGVDGREVMDVICQDHKLNLSRYYMRPGFAFGGSCLPKDVRALTYRASQLDVEHPMLGSLMRSNSNQVQKAFDLITSHDTRKVGLLGLSFKAGTDDLRESPLVELAEMLIGKGYELRIFDRNVEYARVHGANKEYIESKIPHVSSLLVSDLDEVVASSDVLVLGNGDELFVDLVNKTPSGKKLVDLVGFMPHTTTAQAEGICW 436
               SCOP domains d1muud2 D:1-202 GDP-mannose 6-dehydrogenase                                                                                                                                                               d1muud1 D:203-300 GDP-mannose 6-dehydrogenase, middle domain                                      d1muud3 D:301-436 GDP-mannose 6-dehydrogenase, GDP-binding domain                                                                        SCOP domains
               CATH domains -1muuD01 D:2-202 NAD(P)-binding Rossmann-like Domain                                                                                                                                                      --------------------------------1muuD03 D:235-436 NAD(P)-binding Rossmann-like Domain                                                                                                                                                      CATH domains
           Pfam domains (1) UDPG_MGDP_dh_N-1muuD05 D:1-190                                                                                                                                                                ------------UDPG_MGDP_dh-1muuD01 D:203-300                                                                    ----------------UDPG_MGDP_dh_C-1muuD09 D:317-423                                                                           ------------- Pfam domains (1)
           Pfam domains (2) UDPG_MGDP_dh_N-1muuD06 D:1-190                                                                                                                                                                ------------UDPG_MGDP_dh-1muuD02 D:203-300                                                                    ----------------UDPG_MGDP_dh_C-1muuD10 D:317-423                                                                           ------------- Pfam domains (2)
           Pfam domains (3) UDPG_MGDP_dh_N-1muuD07 D:1-190                                                                                                                                                                ------------UDPG_MGDP_dh-1muuD03 D:203-300                                                                    ----------------UDPG_MGDP_dh_C-1muuD11 D:317-423                                                                           ------------- Pfam domains (3)
           Pfam domains (4) UDPG_MGDP_dh_N-1muuD08 D:1-190                                                                                                                                                                ------------UDPG_MGDP_dh-1muuD04 D:203-300                                                                    ----------------UDPG_MGDP_dh_C-1muuD12 D:317-423                                                                           ------------- Pfam domains (4)
         Sec.struct. author .eeeee..hhhhhhhhhhhhhh..eeeee..hhhhhhhhhh........hhhhhhhhhhhh..eeee.hhhhhhhh..eeee.............hhhhhhhhhhhhhhhh......eeee......hhhhhhhhhhhhhhhh.......eeee........hhhhhhhh...eeeee.hhhhhhhhhhhhh.....eeeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhh.....................hhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhh.....eeeee.............hhhhhhhhhhhhh..eeeeehhhhhhhhhh..hhhhhhh.hhhhhh....hhhhhhhhh.eeee...hhhhhhhhhh.....eeee............eee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1muu D   1 mRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDFGVGTNPEFLRESTAIKDYDFPPmTVIGELDKQTGDLLEEIYRELDAPIIRKTVEVAEmIKYTCNVWHAAKVTFANEIGNIAKAVGVDGREVmDVICQDHKLNLSRYYmRPGFAFGGSCLPKDVRALTYRASQLDVEHPmLGSLmRSNSNQVQKAFDLITSHDTRKVGLLGLSFKAGTDDLRESPLVELAEmLIGKGYELRIFDRNVEYARVHGANKEYIESKIPHVSSLLVSDLDEVVASSDVLVLGNGDELFVDLVNKTPSGKKLVDLVGFmPHTTTAQAEGICW 436
                            |       10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170  |    180       190       200       210       220       230       240 |     250       260       270       280       290   |   300       310       320       330       340|      350       360       370       380       390       400       410       420  |    430      
                            1-MSE                                                                                                                                                                     173-MSE                            208-MSE                           242-MSE         258-MSE                        289-MSE|                                            341-MSE                                                                           423-MSE         
                                                                                                                                                                                                                                                                                                                               294-MSE

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: Rossmann fold (7312)

Homologous Superfamily: NAD(P)-binding Rossmann-like Domain (1244)

Pseudomonas aeruginosa. Organism_taxid: 287. (5)

1a	1muuA01	A:2-202
1b	1muuA03	A:235-436
1c	1muuB03	B:235-436
1d	1muuC03	C:235-436
1e	1muuD03	D:235-436
1f	1muuB01	B:2-202
1g	1muuC01	C:2-202
1h	1muuD01	D:2-202

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: 6PGD_C (47)

Family: UDPG_MGDP_dh (10)

Pseudomonas aeruginosa (3)

1a	UDPG_MGDP_dh-1muuD01	D:203-300
1b	UDPG_MGDP_dh-1muuD02	D:203-300
1c	UDPG_MGDP_dh-1muuD03	D:203-300
1d	UDPG_MGDP_dh-1muuD04	D:203-300

Clan: NADP_Rossmann (1239)

Family: UDPG_MGDP_dh_N (10)

Pseudomonas aeruginosa (3)

2a	UDPG_MGDP_dh_N-1muuD05	D:1-190
2b	UDPG_MGDP_dh_N-1muuD06	D:1-190
2c	UDPG_MGDP_dh_N-1muuD07	D:1-190
2d	UDPG_MGDP_dh_N-1muuD08	D:1-190

Clan: no clan defined [family: UDPG_MGDP_dh_C] (10)

Family: UDPG_MGDP_dh_C (10)

Pseudomonas aeruginosa (3)

3a	UDPG_MGDP_dh_C-1muuD09	D:317-423
3b	UDPG_MGDP_dh_C-1muuD10	D:317-423
3c	UDPG_MGDP_dh_C-1muuD11	D:317-423
3d	UDPG_MGDP_dh_C-1muuD12	D:317-423

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D (ALGD_PSEAE | P11759)

molecular function
	GO:0047919	GDP-mannose 6-dehydrogenase activity	Catalysis of the reaction: GDP-alpha-D-mannose + H(2)O + 2 NAD(+) = GDP-D-mannuronate + 3 H(+) + 2 NADH.
	GO:0051287	NAD binding	Interacting selectively and non-covalently with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD+, or the reduced form, NADH.
	GO:0003979	UDP-glucose 6-dehydrogenase activity	Catalysis of the reaction: H(2)O + 2 NAD(+) + UDP-alpha-D-glucose = 3 H(+) + 2 NADH + UDP-alpha-D-glucuronate.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
	GO:0016616	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group acts as a hydrogen or electron donor and reduces NAD+ or NADP.
biological process
	GO:0006065	UDP-glucuronate biosynthetic process	The chemical reactions and pathways resulting in the formation of UDP-glucuronate, a substance composed of glucuronic acid in glycosidic linkage with uridine diphosphate.
	GO:0042121	alginic acid biosynthetic process	The chemical reactions and pathways resulting in the formation of alginic acid, a hydrophilic polysaccharide occurring in, for example, the cell walls of brown algae (brown seaweeds).
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

Asymmetric Unit
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	1muu
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	1.1.1.132
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	ALGD_PSEAE \| P11759	:	1mfz 1mv8

(no "Related Entries Specified in the PDB File" available for 1MUU)

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 45)

Sites (9, 9)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

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Exons (0, 0)

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SCOP Domains (3, 12)

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