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Sequence, Chains, Asymmetric and Biological Units

Title 1.55 A CRYSTAL STRUCTURE OF A TERNARY COMPLEX OF GDP-MANNOSE DEHYDROGENASE FROM PSUEDOMONAS AERUGINOSA
Keywords ROSSMANN FOLD, DOMAIN-SWAPPED DIMER, ENZYME COMPLEX WITH COF PRODUCT, OXIDOREDUCTASE
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   1MV8     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   GDP-MANNOSE 6-DEHYDROGENASE  A 436 3280 0
2  Protein   GDP-MANNOSE 6-DEHYDROGENASE  B 436 3273 0
3  Protein   GDP-MANNOSE 6-DEHYDROGENASE  C 436 3297 0
4  Protein   GDP-MANNOSE 6-DEHYDROGENASE  D 436 3291 0
5  Ligand    E 2 0 23
6  Ligand    F 2 0 23
7  Ligand   GDP-MANNOSE 6-DEHYDROGENASE  A 3 0 115
8  Ligand   GDP-MANNOSE 6-DEHYDROGENASE  B 1 0 35
9  Ligand   GDP-MANNOSE 6-DEHYDROGENASE  C 4 0 51
10  Ligand   GDP-MANNOSE 6-DEHYDROGENASE  D 3 0 115
11 Water     1376 0 1376
total       3135 13141 1738
Proteins
Unit 1 MET1 ARG2 ILE3 SER4 ILE5 PHE6 GLY7 LEU8 GLY9 TYR10 VAL11 GLY12 ALA13 VAL14 CYS15 ALA16 GLY17 CYS18 LEU19 SER20 ALA21 ARG22 GLY23 HIS24 GLU25 VAL26 ILE27 GLY28 VAL29 ASP30 VAL31 SER32 SER33 THR34 LYS35 ILE36 ASP37 LEU38 ILE39 ASN40 GLN41 GLY42 LYS43 SER44 PRO45 ILE46 VAL47 GLU48 PRO49 GLY50 LEU51 GLU52 ALA53 LEU54 LEU55 GLN56 GLN57 GLY58 ARG59 GLN60 THR61 GLY62 ARG63 LEU64 SER65 GLY66 THR67 THR68 ASP69 PHE70 LYS71 LYS72 ALA73 VAL74 LEU75 ASP76 SER77 ASP78 VAL79 SER80 PHE81 ILE82 CYS83 VAL84 GLY85 THR86 PRO87 SER88 LYS89 LYS90 ASN91 GLY92 ASP93 LEU94 ASP95 LEU96 GLY97 TYR98 ILE99 GLU100 THR101 VAL102 CYS103 ARG104 GLU105 ILE106 GLY107 PHE108 ALA109 ILE110 ARG111 GLU112 LYS113 SER114 GLU115 ARG116 HIS117 THR118 VAL119 VAL120 VAL121 ARG122 SER123 THR124 VAL125 LEU126 PRO127 GLY128 THR129 VAL130 ASN131 ASN132 VAL133 VAL134 ILE135 PRO136 LEU137 ILE138 GLU139 ASP140 CYS141 SER142 GLY143 LYS144 LYS145 ALA146 GLY147 VAL148 ASP149 PHE150 GLY151 VAL152 GLY153 THR154 ASN155 PRO156 GLU157 PHE158 LEU159 ARG160 GLU161 SER162 THR163 ALA164 ILE165 LYS166 ASP167 TYR168 ASP169 PHE170 PRO171 PRO172 MET173 THR174 VAL175 ILE176 GLY177 GLU178 LEU179 ASP180 LYS181 GLN182 THR183 GLY184 ASP185 LEU186 LEU187 GLU188 GLU189 ILE190 TYR191 ARG192 GLU193 LEU194 ASP195 ALA196 PRO197 ILE198 ILE199 ARG200 LYS201 THR202 VAL203 GLU204 VAL205 ALA206 GLU207 MET208 ILE209 LYS210 TYR211 THR212 CYS213 ASN214 VAL215 TRP216 HIS217 ALA218 ALA219 LYS220 VAL221 THR222 PHE223 ALA224 ASN225 GLU226 ILE227 GLY228 ASN229 ILE230 ALA231 LYS232 ALA233 VAL234 GLY235 VAL236 ASP237 GLY238 ARG239 GLU240 VAL241 MET242 ASP243 VAL244 ILE245 CYS246 GLN247 ASP248 HIS249 LYS250 LEU251 ASN252 LEU253 SER254 ARG255 TYR256 TYR257 MET258 ARG259 PRO260 GLY261 PHE262 ALA263 PHE264 GLY265 GLY266 SER267 CYS268 LEU269 PRO270 LYS271 ASP272 VAL273 ARG274 ALA275 LEU276 THR277 TYR278 ARG279 ALA280 SER281 GLN282 LEU283 ASP284 VAL285 GLU286 HIS287 PRO288 MET289 LEU290 GLY291 SER292 LEU293 MET294 ARG295 SER296 ASN297 SER298 ASN299 GLN300 VAL301 GLN302 LYS303 ALA304 PHE305 ASP306 LEU307 ILE308 THR309 SER310 HIS311 ASP312 THR313 ARG314 LYS315 VAL316 GLY317 LEU318 LEU319 GLY320 LEU321 SER322 PHE323 LYS324 ALA325 GLY326 THR327 ASP328 ASP329 LEU330 ARG331 GLU332 SER333 PRO334 LEU335 VAL336 GLU337 LEU338 ALA339 GLU340 MET341 LEU342 ILE343 GLY344 LYS345 GLY346 TYR347 GLU348 LEU349 ARG350 ILE351 PHE352 ASP353 ARG354 ASN355 VAL356 GLU357 TYR358 ALA359 ARG360 VAL361 HIS362 GLY363 ALA364 ASN365 LYS366 GLU367 TYR368 ILE369 GLU370 SER371 LYS372 ILE373 PRO374 HIS375 VAL376 SER377 SER378 LEU379 LEU380 VAL381 SER382 ASP383 LEU384 ASP385 GLU386 VAL387 VAL388 ALA389 SER390 SER391 ASP392 VAL393 LEU394 VAL395 LEU396 GLY397 ASN398 GLY399 ASP400 GLU401 LEU402 PHE403 VAL404 ASP405 LEU406 VAL407 ASN408 LYS409 THR410 PRO411 SER412 GLY413 LYS414 LYS415 LEU416 VAL417 ASP418 LEU419 VAL420 GLY421 PHE422 MET423 PRO424 HIS425 THR426 THR427 THR428 ALA429 GLN430 ALA431 GLU432 GLY433 ILE434 CYS435 TRP436
Unit 2 MET1 ARG2 ILE3 SER4 ILE5 PHE6 GLY7 LEU8 GLY9 TYR10 VAL11 GLY12 ALA13 VAL14 CYS15 ALA16 GLY17 CYS18 LEU19 SER20 ALA21 ARG22 GLY23 HIS24 GLU25 VAL26 ILE27 GLY28 VAL29 ASP30 VAL31 SER32 SER33 THR34 LYS35 ILE36 ASP37 LEU38 ILE39 ASN40 GLN41 GLY42 LYS43 SER44 PRO45 ILE46 VAL47 GLU48 PRO49 GLY50 LEU51 GLU52 ALA53 LEU54 LEU55 GLN56 GLN57 GLY58 ARG59 GLN60 THR61 GLY62 ARG63 LEU64 SER65 GLY66 THR67 THR68 ASP69 PHE70 LYS71 LYS72 ALA73 VAL74 LEU75 ASP76 SER77 ASP78 VAL79 SER80 PHE81 ILE82 CYS83 VAL84 GLY85 THR86 PRO87 SER88 LYS89 LYS90 ASN91 GLY92 ASP93 LEU94 ASP95 LEU96 GLY97 TYR98 ILE99 GLU100 THR101 VAL102 CYS103 ARG104 GLU105 ILE106 GLY107 PHE108 ALA109 ILE110 ARG111 GLU112 LYS113 SER114 GLU115 ARG116 HIS117 THR118 VAL119 VAL120 VAL121 ARG122 SER123 THR124 VAL125 LEU126 PRO127 GLY128 THR129 VAL130 ASN131 ASN132 VAL133 VAL134 ILE135 PRO136 LEU137 ILE138 GLU139 ASP140 CYS141 SER142 GLY143 LYS144 LYS145 ALA146 GLY147 VAL148 ASP149 PHE150 GLY151 VAL152 GLY153 THR154 ASN155 PRO156 GLU157 PHE158 LEU159 ARG160 GLU161 SER162 THR163 ALA164 ILE165 LYS166 ASP167 TYR168 ASP169 PHE170 PRO171 PRO172 MET173 THR174 VAL175 ILE176 GLY177 GLU178 LEU179 ASP180 LYS181 GLN182 THR183 GLY184 ASP185 LEU186 LEU187 GLU188 GLU189 ILE190 TYR191 ARG192 GLU193 LEU194 ASP195 ALA196 PRO197 ILE198 ILE199 ARG200 LYS201 THR202 VAL203 GLU204 VAL205 ALA206 GLU207 MET208 ILE209 LYS210 TYR211 THR212 CYS213 ASN214 VAL215 TRP216 HIS217 ALA218 ALA219 LYS220 VAL221 THR222 PHE223 ALA224 ASN225 GLU226 ILE227 GLY228 ASN229 ILE230 ALA231 LYS232 ALA233 VAL234 GLY235 VAL236 ASP237 GLY238 ARG239 GLU240 VAL241 MET242 ASP243 VAL244 ILE245 CYS246 GLN247 ASP248 HIS249 LYS250 LEU251 ASN252 LEU253 SER254 ARG255 TYR256 TYR257 MET258 ARG259 PRO260 GLY261 PHE262 ALA263 PHE264 GLY265 GLY266 SER267 CYS268 LEU269 PRO270 LYS271 ASP272 VAL273 ARG274 ALA275 LEU276 THR277 TYR278 ARG279 ALA280 SER281 GLN282 LEU283 ASP284 VAL285 GLU286 HIS287 PRO288 MET289 LEU290 GLY291 SER292 LEU293 MET294 ARG295 SER296 ASN297 SER298 ASN299 GLN300 VAL301 GLN302 LYS303 ALA304 PHE305 ASP306 LEU307 ILE308 THR309 SER310 HIS311 ASP312 THR313 ARG314 LYS315 VAL316 GLY317 LEU318 LEU319 GLY320 LEU321 SER322 PHE323 LYS324 ALA325 GLY326 THR327 ASP328 ASP329 LEU330 ARG331 GLU332 SER333 PRO334 LEU335 VAL336 GLU337 LEU338 ALA339 GLU340 MET341 LEU342 ILE343 GLY344 LYS345 GLY346 TYR347 GLU348 LEU349 ARG350 ILE351 PHE352 ASP353 ARG354 ASN355 VAL356 GLU357 TYR358 ALA359 ARG360 VAL361 HIS362 GLY363 ALA364 ASN365 LYS366 GLU367 TYR368 ILE369 GLU370 SER371 LYS372 ILE373 PRO374 HIS375 VAL376 SER377 SER378 LEU379 LEU380 VAL381 SER382 ASP383 LEU384 ASP385 GLU386 VAL387 VAL388 ALA389 SER390 SER391 ASP392 VAL393 LEU394 VAL395 LEU396 GLY397 ASN398 GLY399 ASP400 GLU401 LEU402 PHE403 VAL404 ASP405 LEU406 VAL407 ASN408 LYS409 THR410 PRO411 SER412 GLY413 LYS414 LYS415 LEU416 VAL417 ASP418 LEU419 VAL420 GLY421 PHE422 MET423 PRO424 HIS425 THR426 THR427 THR428 ALA429 GLN430 ALA431 GLU432 GLY433 ILE434 CYS435 TRP436
Unit 3 MET1 ARG2 ILE3 SER4 ILE5 PHE6 GLY7 LEU8 GLY9 TYR10 VAL11 GLY12 ALA13 VAL14 CYS15 ALA16 GLY17 CYS18 LEU19 SER20 ALA21 ARG22 GLY23 HIS24 GLU25 VAL26 ILE27 GLY28 VAL29 ASP30 VAL31 SER32 SER33 THR34 LYS35 ILE36 ASP37 LEU38 ILE39 ASN40 GLN41 GLY42 LYS43 SER44 PRO45 ILE46 VAL47 GLU48 PRO49 GLY50 LEU51 GLU52 ALA53 LEU54 LEU55 GLN56 GLN57 GLY58 ARG59 GLN60 THR61 GLY62 ARG63 LEU64 SER65 GLY66 THR67 THR68 ASP69 PHE70 LYS71 LYS72 ALA73 VAL74 LEU75 ASP76 SER77 ASP78 VAL79 SER80 PHE81 ILE82 CYS83 VAL84 GLY85 THR86 PRO87 SER88 LYS89 LYS90 ASN91 GLY92 ASP93 LEU94 ASP95 LEU96 GLY97 TYR98 ILE99 GLU100 THR101 VAL102 CYS103 ARG104 GLU105 ILE106 GLY107 PHE108 ALA109 ILE110 ARG111 GLU112 LYS113 SER114 GLU115 ARG116 HIS117 THR118 VAL119 VAL120 VAL121 ARG122 SER123 THR124 VAL125 LEU126 PRO127 GLY128 THR129 VAL130 ASN131 ASN132 VAL133 VAL134 ILE135 PRO136 LEU137 ILE138 GLU139 ASP140 CYS141 SER142 GLY143 LYS144 LYS145 ALA146 GLY147 VAL148 ASP149 PHE150 GLY151 VAL152 GLY153 THR154 ASN155 PRO156 GLU157 PHE158 LEU159 ARG160 GLU161 SER162 THR163 ALA164 ILE165 LYS166 ASP167 TYR168 ASP169 PHE170 PRO171 PRO172 MET173 THR174 VAL175 ILE176 GLY177 GLU178 LEU179 ASP180 LYS181 GLN182 THR183 GLY184 ASP185 LEU186 LEU187 GLU188 GLU189 ILE190 TYR191 ARG192 GLU193 LEU194 ASP195 ALA196 PRO197 ILE198 ILE199 ARG200 LYS201 THR202 VAL203 GLU204 VAL205 ALA206 GLU207 MET208 ILE209 LYS210 TYR211 THR212 CYS213 ASN214 VAL215 TRP216 HIS217 ALA218 ALA219 LYS220 VAL221 THR222 PHE223 ALA224 ASN225 GLU226 ILE227 GLY228 ASN229 ILE230 ALA231 LYS232 ALA233 VAL234 GLY235 VAL236 ASP237 GLY238 ARG239 GLU240 VAL241 MET242 ASP243 VAL244 ILE245 CYS246 GLN247 ASP248 HIS249 LYS250 LEU251 ASN252 LEU253 SER254 ARG255 TYR256 TYR257 MET258 ARG259 PRO260 GLY261 PHE262 ALA263 PHE264 GLY265 GLY266 SER267 CYS268 LEU269 PRO270 LYS271 ASP272 VAL273 ARG274 ALA275 LEU276 THR277 TYR278 ARG279 ALA280 SER281 GLN282 LEU283 ASP284 VAL285 GLU286 HIS287 PRO288 MET289 LEU290 GLY291 SER292 LEU293 MET294 ARG295 SER296 ASN297 SER298 ASN299 GLN300 VAL301 GLN302 LYS303 ALA304 PHE305 ASP306 LEU307 ILE308 THR309 SER310 HIS311 ASP312 THR313 ARG314 LYS315 VAL316 GLY317 LEU318 LEU319 GLY320 LEU321 SER322 PHE323 LYS324 ALA325 GLY326 THR327 ASP328 ASP329 LEU330 ARG331 GLU332 SER333 PRO334 LEU335 VAL336 GLU337 LEU338 ALA339 GLU340 MET341 LEU342 ILE343 GLY344 LYS345 GLY346 TYR347 GLU348 LEU349 ARG350 ILE351 PHE352 ASP353 ARG354 ASN355 VAL356 GLU357 TYR358 ALA359 ARG360 VAL361 HIS362 GLY363 ALA364 ASN365 LYS366 GLU367 TYR368 ILE369 GLU370 SER371 LYS372 ILE373 PRO374 HIS375 VAL376 SER377 SER378 LEU379 LEU380 VAL381 SER382 ASP383 LEU384 ASP385 GLU386 VAL387 VAL388 ALA389 SER390 SER391 ASP392 VAL393 LEU394 VAL395 LEU396 GLY397 ASN398 GLY399 ASP400 GLU401 LEU402 PHE403 VAL404 ASP405 LEU406 VAL407 ASN408 LYS409 THR410 PRO411 SER412 GLY413 LYS414 LYS415 LEU416 VAL417 ASP418 LEU419 VAL420 GLY421 PHE422 MET423 PRO424 HIS425 THR426 THR427 THR428 ALA429 GLN430 ALA431 GLU432 GLY433 ILE434 CYS435 TRP436
Unit 4 MET1 ARG2 ILE3 SER4 ILE5 PHE6 GLY7 LEU8 GLY9 TYR10 VAL11 GLY12 ALA13 VAL14 CYS15 ALA16 GLY17 CYS18 LEU19 SER20 ALA21 ARG22 GLY23 HIS24 GLU25 VAL26 ILE27 GLY28 VAL29 ASP30 VAL31 SER32 SER33 THR34 LYS35 ILE36 ASP37 LEU38 ILE39 ASN40 GLN41 GLY42 LYS43 SER44 PRO45 ILE46 VAL47 GLU48 PRO49 GLY50 LEU51 GLU52 ALA53 LEU54 LEU55 GLN56 GLN57 GLY58 ARG59 GLN60 THR61 GLY62 ARG63 LEU64 SER65 GLY66 THR67 THR68 ASP69 PHE70 LYS71 LYS72 ALA73 VAL74 LEU75 ASP76 SER77 ASP78 VAL79 SER80 PHE81 ILE82 CYS83 VAL84 GLY85 THR86 PRO87 SER88 LYS89 LYS90 ASN91 GLY92 ASP93 LEU94 ASP95 LEU96 GLY97 TYR98 ILE99 GLU100 THR101 VAL102 CYS103 ARG104 GLU105 ILE106 GLY107 PHE108 ALA109 ILE110 ARG111 GLU112 LYS113 SER114 GLU115 ARG116 HIS117 THR118 VAL119 VAL120 VAL121 ARG122 SER123 THR124 VAL125 LEU126 PRO127 GLY128 THR129 VAL130 ASN131 ASN132 VAL133 VAL134 ILE135 PRO136 LEU137 ILE138 GLU139 ASP140 CYS141 SER142 GLY143 LYS144 LYS145 ALA146 GLY147 VAL148 ASP149 PHE150 GLY151 VAL152 GLY153 THR154 ASN155 PRO156 GLU157 PHE158 LEU159 ARG160 GLU161 SER162 THR163 ALA164 ILE165 LYS166 ASP167 TYR168 ASP169 PHE170 PRO171 PRO172 MET173 THR174 VAL175 ILE176 GLY177 GLU178 LEU179 ASP180 LYS181 GLN182 THR183 GLY184 ASP185 LEU186 LEU187 GLU188 GLU189 ILE190 TYR191 ARG192 GLU193 LEU194 ASP195 ALA196 PRO197 ILE198 ILE199 ARG200 LYS201 THR202 VAL203 GLU204 VAL205 ALA206 GLU207 MET208 ILE209 LYS210 TYR211 THR212 CYS213 ASN214 VAL215 TRP216 HIS217 ALA218 ALA219 LYS220 VAL221 THR222 PHE223 ALA224 ASN225 GLU226 ILE227 GLY228 ASN229 ILE230 ALA231 LYS232 ALA233 VAL234 GLY235 VAL236 ASP237 GLY238 ARG239 GLU240 VAL241 MET242 ASP243 VAL244 ILE245 CYS246 GLN247 ASP248 HIS249 LYS250 LEU251 ASN252 LEU253 SER254 ARG255 TYR256 TYR257 MET258 ARG259 PRO260 GLY261 PHE262 ALA263 PHE264 GLY265 GLY266 SER267 CYS268 LEU269 PRO270 LYS271 ASP272 VAL273 ARG274 ALA275 LEU276 THR277 TYR278 ARG279 ALA280 SER281 GLN282 LEU283 ASP284 VAL285 GLU286 HIS287 PRO288 MET289 LEU290 GLY291 SER292 LEU293 MET294 ARG295 SER296 ASN297 SER298 ASN299 GLN300 VAL301 GLN302 LYS303 ALA304 PHE305 ASP306 LEU307 ILE308 THR309 SER310 HIS311 ASP312 THR313 ARG314 LYS315 VAL316 GLY317 LEU318 LEU319 GLY320 LEU321 SER322 PHE323 LYS324 ALA325 GLY326 THR327 ASP328 ASP329 LEU330 ARG331 GLU332 SER333 PRO334 LEU335 VAL336 GLU337 LEU338 ALA339 GLU340 MET341 LEU342 ILE343 GLY344 LYS345 GLY346 TYR347 GLU348 LEU349 ARG350 ILE351 PHE352 ASP353 ARG354 ASN355 VAL356 GLU357 TYR358 ALA359 ARG360 VAL361 HIS362 GLY363 ALA364 ASN365 LYS366 GLU367 TYR368 ILE369 GLU370 SER371 LYS372 ILE373 PRO374 HIS375 VAL376 SER377 SER378 LEU379 LEU380 VAL381 SER382 ASP383 LEU384 ASP385 GLU386 VAL387 VAL388 ALA389 SER390 SER391 ASP392 VAL393 LEU394 VAL395 LEU396 GLY397 ASN398 GLY399 ASP400 GLU401 LEU402 PHE403 VAL404 ASP405 LEU406 VAL407 ASN408 LYS409 THR410 PRO411 SER412 GLY413 LYS414 LYS415 LEU416 VAL417 ASP418 LEU419 VAL420 GLY421 PHE422 MET423 PRO424 HIS425 THR426 THR427 THR428 ALA429 GLN430 ALA431 GLU432 GLY433 ILE434 CYS435 TRP436
Ligands
Unit 5 GLC1 FRU2
Unit 6 GLC1 FRU2
Unit 7 NAD2001 GDX2005 GDX2006
Unit 8 NAD2002
Unit 9 NAD2003 ACY2009 ACY2010 MPD2011
Unit 10 NAD2004 GDX2007 GDX2008
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany