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1KBP
Biol. Unit 2
Info
Asym.Unit (299 KB)
Biol.Unit 1 (292 KB)
Biol.Unit 2 (291 KB)
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(1)
Title
:
KIDNEY BEAN PURPLE ACID PHOSPHATASE
Authors
:
T. Klabunde, N. Strater, B. Krebs
Date
:
20 Feb 95 (Deposition) - 14 Oct 96 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.65
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: B,C (2x)
Biol. Unit 2: A,D (2x)
Keywords
:
Purple Acid Phosphatase, Hydrolase (Phosphoric Monoester)
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Klabunde, N. Strater, R. Frohlich, H. Witzel, B. Krebs
Mechanism Of Fe(Iii)-Zn(Ii) Purple Acid Phosphatase Based O Crystal Structures.
J. Mol. Biol. V. 259 737 1996
(for further references see the
PDB file header
)
[
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Hetero Components
(1, 20)
Info
All Hetero Components
1a: FE (III) ION (FEa)
1b: FE (III) ION (FEb)
1c: FE (III) ION (FEc)
1d: FE (III) ION (FEd)
2a: N-ACETYL-D-GLUCOSAMINE (NAGa)
2b: N-ACETYL-D-GLUCOSAMINE (NAGb)
2c: N-ACETYL-D-GLUCOSAMINE (NAGc)
2d: N-ACETYL-D-GLUCOSAMINE (NAGd)
2e: N-ACETYL-D-GLUCOSAMINE (NAGe)
2f: N-ACETYL-D-GLUCOSAMINE (NAGf)
2g: N-ACETYL-D-GLUCOSAMINE (NAGg)
2h: N-ACETYL-D-GLUCOSAMINE (NAGh)
2i: N-ACETYL-D-GLUCOSAMINE (NAGi)
2j: N-ACETYL-D-GLUCOSAMINE (NAGj)
2k: N-ACETYL-D-GLUCOSAMINE (NAGk)
2l: N-ACETYL-D-GLUCOSAMINE (NAGl)
2m: N-ACETYL-D-GLUCOSAMINE (NAGm)
2n: N-ACETYL-D-GLUCOSAMINE (NAGn)
2o: N-ACETYL-D-GLUCOSAMINE (NAGo)
2p: N-ACETYL-D-GLUCOSAMINE (NAGp)
2q: N-ACETYL-D-GLUCOSAMINE (NAGq)
2r: N-ACETYL-D-GLUCOSAMINE (NAGr)
2s: N-ACETYL-D-GLUCOSAMINE (NAGs)
2t: N-ACETYL-D-GLUCOSAMINE (NAGt)
3a: ZINC ION (ZNa)
3b: ZINC ION (ZNb)
3c: ZINC ION (ZNc)
3d: ZINC ION (ZNd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
FE
-1
Ligand/Ion
FE (III) ION
2
NAG
20
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
3
ZN
-1
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(16, 16)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: ATA (UNKNOWN)
07: ATD (UNKNOWN)
08: BC7 (SOFTWARE)
09: BC8 (SOFTWARE)
10: BC9 (SOFTWARE)
11: CC1 (SOFTWARE)
12: CC2 (SOFTWARE)
13: CC3 (SOFTWARE)
14: CC4 (SOFTWARE)
15: CC9 (SOFTWARE)
16: DC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:81 , TYR D:24 , ASP D:50 , GLU D:51
BINDING SITE FOR RESIDUE NAG A 433A
02
AC2
SOFTWARE
TYR A:24 , ARG A:108 , ASN A:109
BINDING SITE FOR RESIDUE NAG A 434A
03
AC3
SOFTWARE
MET A:11 , ASP A:16 , ASN A:143 , SER A:147 , ARG A:188
BINDING SITE FOR RESIDUE NAG A 435A
04
AC4
SOFTWARE
PRO A:208 , GLU A:209 , ASN A:211
BINDING SITE FOR RESIDUE NAG A 436A
05
AC5
SOFTWARE
ASN A:396 , HIS A:399
BINDING SITE FOR RESIDUE NAG A 437A
06
ATA
UNKNOWN
FE A:438 , ZN A:439
NULL
07
ATD
UNKNOWN
FE D:438 , ZN D:439
NULL
08
BC7
SOFTWARE
TYR A:24 , ASP A:50 , GLU A:51 , ASN D:81
BINDING SITE FOR RESIDUE NAG D 433A
09
BC8
SOFTWARE
TYR D:24 , ARG D:108 , ASN D:109
BINDING SITE FOR RESIDUE NAG D 434A
10
BC9
SOFTWARE
MET D:11 , ASP D:16 , ASN D:143 , SER D:147 , ARG D:188
BINDING SITE FOR RESIDUE NAG D 435A
11
CC1
SOFTWARE
PRO D:208 , GLU D:209 , ASN D:211
BINDING SITE FOR RESIDUE NAG D 436A
12
CC2
SOFTWARE
ARG C:397 , ASN D:396 , HIS D:399
BINDING SITE FOR RESIDUE NAG D 437A
13
CC3
SOFTWARE
ASP A:135 , ASP A:164 , TYR A:167 , HIS A:325 , ZN A:439
BINDING SITE FOR RESIDUE FE A 438
14
CC4
SOFTWARE
ASP A:164 , ASN A:201 , HIS A:286 , HIS A:323 , FE A:438
BINDING SITE FOR RESIDUE ZN A 439
15
CC9
SOFTWARE
ASP D:135 , ASP D:164 , TYR D:167 , HIS D:325 , ZN D:439
BINDING SITE FOR RESIDUE FE D 438
16
DC1
SOFTWARE
ASP D:164 , ASN D:201 , HIS D:286 , HIS D:323 , FE D:438
BINDING SITE FOR RESIDUE ZN D 439
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(, 0)
Info
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;
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End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d1kbpa1 (A:9-120)
1b: SCOP_d1kbpb1 (B:9-120)
1c: SCOP_d1kbpc1 (C:9-120)
1d: SCOP_d1kbpd1 (D:9-120)
2a: SCOP_d1kbpa2 (A:121-432)
2b: SCOP_d1kbpb2 (B:121-432)
2c: SCOP_d1kbpc2 (C:121-432)
2d: SCOP_d1kbpd2 (D:121-432)
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Classes
(
)
(
)
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(
)
(
)
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)
(
)
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(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Purple acid phosphatase, N-terminal domain
(9)
Family
:
Purple acid phosphatase, N-terminal domain
(4)
Protein domain
:
Purple acid phosphatase, N-terminal domain
(4)
French bean (Phaseolus vulgaris) [TaxId: 3885]
(3)
1a
d1kbpa1
A:9-120
1b
d1kbpb1
B:9-120
1c
d1kbpc1
C:9-120
1d
d1kbpd1
D:9-120
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Metallo-dependent phosphatases
(115)
Superfamily
:
Metallo-dependent phosphatases
(115)
Family
:
Purple acid phosphatase-like
(14)
Protein domain
:
Plant purple acid phosphatase, catalytic domain
(4)
French bean (Phaseolus vulgaris) [TaxId: 3885]
(3)
2a
d1kbpa2
A:121-432
2b
d1kbpb2
B:121-432
2c
d1kbpc2
C:121-432
2d
d1kbpd2
D:121-432
[
close SCOP info
]
CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_1kbpA02 (A:123-432)
1b: CATH_1kbpB02 (B:123-432)
1c: CATH_1kbpC02 (C:123-432)
1d: CATH_1kbpD02 (D:123-432)
2a: CATH_1kbpA01 (A:26-122)
2b: CATH_1kbpB01 (B:26-122)
2c: CATH_1kbpC01 (C:26-122)
2d: CATH_1kbpD01 (D:26-122)
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)
(
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)
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(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
4-Layer Sandwich
(459)
Topology
:
Purple Acid Phosphatase; chain A, domain 2
(87)
Homologous Superfamily
:
[code=3.60.21.10, no name defined]
(83)
Phaseolus vulgaris. Organism_taxid: 3885
(3)
1a
1kbpA02
A:123-432
1b
1kbpB02
B:123-432
1c
1kbpC02
C:123-432
1d
1kbpD02
D:123-432
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Purple acid phosphatase, domain1
(6)
Phaseolus vulgaris. Organism_taxid: 3885
(3)
2a
1kbpA01
A:26-122
2b
1kbpB01
B:26-122
2c
1kbpC01
C:26-122
2d
1kbpD01
D:26-122
[
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]
Pfam Domains
(2, 8)
Info
all PFAM domains
1a: PFAM_Metallophos_1kbpD01 (D:101-300)
1b: PFAM_Metallophos_1kbpD02 (D:101-300)
1c: PFAM_Metallophos_1kbpD03 (D:101-300)
1d: PFAM_Metallophos_1kbpD04 (D:101-300)
2a: PFAM_Metallophos_C_1kbpD05 (D:325-391)
2b: PFAM_Metallophos_C_1kbpD06 (D:325-391)
2c: PFAM_Metallophos_C_1kbpD07 (D:325-391)
2d: PFAM_Metallophos_C_1kbpD08 (D:325-391)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
Calcineurin
(56)
Family
:
Metallophos
(45)
Phaseolus vulgaris (Kidney bean) (French bean)
(4)
1a
Metallophos-1kbpD01
D:101-300
1b
Metallophos-1kbpD02
D:101-300
1c
Metallophos-1kbpD03
D:101-300
1d
Metallophos-1kbpD04
D:101-300
Clan
:
no clan defined [family: Metallophos_C]
(5)
Family
:
Metallophos_C
(5)
Phaseolus vulgaris (Kidney bean) (French bean)
(4)
2a
Metallophos_C-1kbpD05
D:325-391
2b
Metallophos_C-1kbpD06
D:325-391
2c
Metallophos_C-1kbpD07
D:325-391
2d
Metallophos_C-1kbpD08
D:325-391
[
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