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Theoretical Model  (Jmol Viewer)

(-) Description

Title :  HOMOLOGY-BASED THEORETICAL MOLECULAR MODEL OF HUMAN TRYPTOPHAN HYDROXYLASE REGULATORY, CATALYTIC AND TETRAMERIZATION DOMAINS
 
Authors :  G. C. T. Jiang, G. J. Yohrling Iv, J. D. Schmitt, K. E. Vrana
Date :  13 May 01  (Deposition) - 23 May 01  (Release) - 01 Apr 03  (Revision)
Method :  THEORETICAL MODEL
Resolution :  NOT APPLICABLE
Chains :  Theor. Model :  A
Keywords :  Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  G. C. Jiang, G. J. Yohrling 4Th. , J. D. Schmitt, K. E. Vrana
Identification Of Substrate Orienting And Phosphorylation Sites Within Tryptophan Hydroxylase Using Homology-Based Molecular Modeling.
J. Mol. Biol. V. 302 1005 2000
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - TRYPTOPHAN HYDROXYLASE
    ChainsA
    EC Number1.14.16.4
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS

 Structural Features

(-) Chains, Units

  
Theoretical Model 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1IN9)

(-) Sites  (0, 0)

(no "Site" information available for 1IN9)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1IN9)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1IN9)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1IN9)

(-) PROSITE Motifs  (3, 3)

Theoretical Model (3, 3)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ACTPS51671 ACT domain profile.TPH1_HUMAN19-94  1A:19-94
2BH4_AAA_HYDROXYL_2PS51410 Biopterin-dependent aromatic amino acid hydroxylase family profile.TPH1_HUMAN93-439  1A:93-439
3BH4_AAA_HYDROXYL_1PS00367 Biopterin-dependent aromatic amino acid hydroxylases signature.TPH1_HUMAN268-279  1A:268-279

(-) Exons   (10, 10)

Theoretical Model (10, 10)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.2aENST000002500182aENSE00002158804chr11:18062872-18062193680TPH1_HUMAN1-39391A:2-3938
1.3ENST000002500183ENSE00000886552chr11:18057689-18057506184TPH1_HUMAN40-101621A:40-10162
1.4ENST000002500184ENSE00000886551chr11:18054921-18054821101TPH1_HUMAN101-134341A:101-13434
1.5bENST000002500185bENSE00000886550chr11:18051126-1805105968TPH1_HUMAN135-157231A:135-15723
1.6ENST000002500186ENSE00000886549chr11:18050908-18050712197TPH1_HUMAN157-223671A:157-22367
1.7ENST000002500187ENSE00001803012chr11:18048172-18048037136TPH1_HUMAN223-268461A:223-26846
1.8ENST000002500188ENSE00001617695chr11:18047248-18047122127TPH1_HUMAN268-310431A:268-31043
1.9ENST000002500189ENSE00001763303chr11:18045530-1804543596TPH1_HUMAN311-342321A:311-34232
1.10bENST0000025001810bENSE00001761007chr11:18044478-18044345134TPH1_HUMAN343-387451A:343-38745
1.11dENST0000025001811dENSE00002161624chr11:18042712-180391113602TPH1_HUMAN387-444581A:387-44458

(-) Sequences/Alignments

Theoretical Model
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:443
 aligned with TPH1_HUMAN | P17752 from UniProtKB/Swiss-Prot  Length:444

    Alignment length:443
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441   
           TPH1_HUMAN     2 IEDNKENKDHSLERGRASLIFSLKNEVGGLIKALKIFQEKHVNLLHIESRKSKRRNSEFEIFVDCDINREQLNDIFHLLKSHTNVLSVNLPDNFTLKEDGMETVPWFPKKISDLDHCANRVLMYGSELDADHPGFKDNVYRKRRKYFADLAMNYKHGDPIPKVEFTEEEIKTWGTVFQELNKLYPTHACREYLKNLPLLSKYCGYREDNIPQLEDVSNFLKERTGFSIRPVAGYLSPRDFLSGLAFRVFHCTQYVRHSSDPFYTPEPDTCHELLGHVPLLAEPSFAQFSQEIGLASLGASEEAVQKLATCYFFTVEFGLCKQDGQLRVFGAGLLSSISELKHALSGHAKVKPFDPKITCKQECLITTFQDVYFVSESFEDAKEKMREFTKTIKRPFGVKYNPYTRSIQILKDTKSITSAMNELQHDLDVVSDALAKVSRKPSI 444
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....................eeee...hhhhhhhhhhhhh......eeeee......eeeeee.hhhhhh...hhhhhhhhhhhh.......ee.hhhhhh..ee....hhhhh........hhhhh.........hhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh........hhhhhhhhhhhhhh.eeee.....hhhhhhhhhhh.eeee................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh....eeee..eeee...hhhhhhhhhhhhh....eeee.hhhhhhh..........eeeee.hhhhhhhhhhhhhhhh.......ee....ee....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -----------------ACT  PDB: A:19-94 UniProt: 19-94                                            -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------BH4_AAA_HYDR--------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (1)
                PROSITE (2) -------------------------------------------------------------------------------------------BH4_AAA_HYDROXYL_2  PDB: A:93-439 UniProt: 93-439                                                                                                                                                                                                                                                                                                          ----- PROSITE (2)
           Transcript 1 (1) Exon 1.2a  PDB: A:2-39 UniProt: 1-39  Exon 1.3  PDB: A:40-101 UniProt: 40-101                       ---------------------------------Exon 1.5b              -----------------------------------------------------------------Exon 1.7  PDB: A:223-268 UniProt: 223-268     ------------------------------------------Exon 1.9  PDB: A:311-342        Exon 1.10b  PDB: A:343-387 UniProt: 343-387  --------------------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) ---------------------------------------------------------------------------------------------------Exon 1.4  PDB: A:101-134          ----------------------Exon 1.6  PDB: A:157-223 UniProt: 157-223                          --------------------------------------------Exon 1.8  PDB: A:268-310 UniProt: 268-310  ----------------------------------------------------------------------------Exon 1.11d  PDB: A:387-444 UniProt: 387-444                Transcript 1 (2)
                 1in9 A   2 IEDNKENKDHSLERGRASLIFSLKNEVGGLIKALKIFQEKHVNLLHIESRKSKRRNSEFEIFVDCDINREQLNDIFHLLKSHTNVLSVNLPDNFTEKEDGMETVPWFPKKISDLDHCANRVLMYGSELDADHPGFKDNVYRKRRKYFADLAMNYKHGDPIPKVEFTEEEIKTWGTVFQELNKLYPTHACREYLKNLPLLSKYCGYREDNIPQLEDVSNFLKERTGFSIRPVAGYLSPRDFLSGLAFRVFHCTQYVRHSSDPFYTPEPDTCHELLGHVPLLAEPSFAQFSQEIGLASLGASEEAVQKLATCYFFTVEFGLCKQDGQLRVFGAGLLSSISELKHALSGHAKVKPFDPKITCKQECLITTFQDVYFVSESFEDAKEKMREFTKTIKRPFGVKYNPYTRSIQILKDTKSITSAMNELQHDLDVVSDALAKVSRKPSI 444
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441   

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 1IN9)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1IN9)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1IN9)

(-) Gene Ontology  (21, 21)

Theoretical Model(hide GO term definitions)
Chain A   (TPH1_HUMAN | P17752)
molecular function
    GO:0016597    amino acid binding    Interacting selectively and non-covalently with an amino acid, organic acids containing one or more amino substituents.
    GO:0005506    iron ion binding    Interacting selectively and non-covalently with iron (Fe) ions.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0004497    monooxygenase activity    Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0016714    oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced pteridine as one donor, and incorporation of one atom of oxygen    Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from reduced pteridine and one other donor, and one atom of oxygen is incorporated into one donor.
    GO:0004510    tryptophan 5-monooxygenase activity    Catalysis of the reaction: L-tryptophan + tetrahydrobiopterin + O2 = 5-hydroxy-L-tryptophan + 4-alpha-hydroxytetrahydrobiopterin + H2O.
biological process
    GO:0009072    aromatic amino acid family metabolic process    The chemical reactions and pathways involving aromatic amino acid family, amino acids with aromatic ring (phenylalanine, tyrosine, tryptophan).
    GO:0046849    bone remodeling    The continuous turnover of bone matrix and mineral that involves first, an increase in resorption (osteoclastic activity) and later, reactive bone formation (osteoblastic activity). The process of bone remodeling takes place in the adult skeleton at discrete foci. The process ensures the mechanical integrity of the skeleton throughout life and plays an important role in calcium homeostasis. An imbalance in the regulation of bone resorption and bone formation results in many of the metabolic bone diseases, such as osteoporosis.
    GO:0007623    circadian rhythm    Any biological process in an organism that recurs with a regularity of approximately 24 hours.
    GO:0046219    indolalkylamine biosynthetic process    The chemical reactions and pathways resulting in the formation of indolalkylamines, indole or indole derivatives containing a primary, secondary, or tertiary amine group.
    GO:0060749    mammary gland alveolus development    The progression of the mammary gland alveolus over time, from its formation to its mature state. The mammary gland alveolus is a sac-like structure that is found in the mature gland.
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
    GO:0030279    negative regulation of ossification    Any process that stops, prevents, or reduces the frequency, rate or extent of bone formation.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
    GO:0045600    positive regulation of fat cell differentiation    Any process that activates or increases the frequency, rate or extent of adipocyte differentiation.
    GO:0035902    response to immobilization stress    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of being rendered immobile.
    GO:0042427    serotonin biosynthetic process    The chemical reactions and pathways resulting in the formation of serotonin (5-hydroxytryptamine), a monoamine neurotransmitter occurring in the peripheral and central nervous systems, also having hormonal properties.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0043005    neuron projection    A prolongation or process extending from a nerve cell, e.g. an axon or dendrite.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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        TPH1_HUMAN | P177521mlw 3hf6 3hf8 3hfb 5j6d 5l01 5tpg

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