1GY6 - JenaLib

Asym./Biol. Unit - manually (Jmol Viewer)

Asym./Biol. Unit (Jmol Viewer)

Title :   NTF2 FROM RAT, AMMONIUM SULPHATE CONDITIONS

Authors :   R. Bayliss, M. Stewart

Date :   21 Apr 02 (Deposition) - 20 Jun 02 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.60

Chains :   Asym./Biol. Unit : A,B

Keywords :   Nuclear Transport (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   R. Bayliss, S. Leung, R. Baker, B. Quimby, A. Corbett, M. Stewart
Structural Basis For The Interaction Between Ntf2 And Nucleoporin Fxfg Repeats
Embo J. V. 21 2843 2002
PubMed-ID: 12065398 | Reference-DOI: 10.1093/EMBOJ/CDF305

Molecule 1 - NUCLEAR TRANSPORT FACTOR 2
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Organism Common	:	RAT
	Organism Scientific	:	RATTUS NORVEGICUS
	Organism Taxid	:	10116
	Synonym	:	NTF-2, PLACENTAL PROTEIN 15, PP15

		1	2
Asymmetric/Biological Unit	:	A	B

Summary Information (see also Sequences/Alignments below)

(no "Ligand,Modified Residues,Ions" information available for 1GY6)

(no "Site" information available for 1GY6)

(no "SS Bond" information available for 1GY6)

(no "Cis Peptide Bond" information available for 1GY6)

(no "SAP(SNP)/Variant" information available for 1GY6)

Asymmetric/Biological Unit (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	NTF2_DOMAIN	PS50177	Nuclear transport factor 2 domain profile.	NTF2_HUMAN	10-121	2	A:10-121 B:10-121
				NTF2_MOUSE	10-121	2	A:10-121 B:10-121
				NTF2_RAT	10-121	2	A:10-121 B:10-121

Asymmetric/Biological Unit (4, 8)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.1	ENSRNOT00000025608	1	ENSRNOE00000363046	chr19:35697564-35697596	33	NTF2_RAT	-	0	0	-	-
1.2	ENSRNOT00000025608	2	ENSRNOE00000230100	chr19:35711999-35712125	127	NTF2_RAT	1-33	33	2	A:3-33 B:3-33	31 31
1.3	ENSRNOT00000025608	3	ENSRNOE00000230088	chr19:35714265-35714336	72	NTF2_RAT	34-57	24	2	A:34-57 B:34-57	24 24
1.4	ENSRNOT00000025608	4	ENSRNOE00000230084	chr19:35714421-35714519	99	NTF2_RAT	58-90	33	2	A:58-90 B:58-90	33 33
1.5	ENSRNOT00000025608	5	ENSRNOE00000183551	chr19:35717241-35718836	1596	NTF2_RAT	91-127	37	2	A:91-127 B:91-125	37 35

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:125
 aligned with NTF2_HUMAN | P61970 from UniProtKB/Swiss-Prot  Length:127

    Alignment length:125
                                    12        22        32        42        52        62        72        82        92       102       112       122     
           NTF2_HUMAN     3 DKPIWEQIGSSFIQHYYQLFDNDRTQLGAIYIDASCLTWEGQQFQGKAAIVEKLSSLPFQKIQHSITAQDHQPTPDSCIISMVVGQLKADEDPIMGFHQMFLLKNINDAWVCTNDMFRLALHNFG 127
               SCOP domains d1gy6a_ A: Nuclear transport factor-2 (NTF2)                                                                                  SCOP domains
               CATH domains 1gy6A00 A:3-127  [code=3.10.450.50, no name defined]                                                                          CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeeeee..eeeehhhhhhhhhhhh....eeeeeeeeeeee.....eeeeeeeeeee.....eeeeeeeeeeee..eeeeeeeeeee...... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) -------NTF2_DOMAIN  PDB: A:10-121 UniProt: 10-121                                                                      ------ PROSITE (2)
                 Transcript ----------------------------------------------------------------------------------------------------------------------------- Transcript
                 1gy6 A   3 DKPIWEQIGSSFIQHYYQLFDNDRTQLGAIYIDASCLTWEGQQFQGKAAIVEKLSSLPFQKIQHSITAQDHQPTPDSCIISMVVGQLKADEDPIMGFHQMFLLKNINDAWVCTNDMFRLALHNFG 127
                                    12        22        32        42        52        62        72        82        92       102       112       122

Chain A from PDB  Type:PROTEIN  Length:125
 aligned with NTF2_MOUSE | P61971 from UniProtKB/Swiss-Prot  Length:127

    Alignment length:125
                                    12        22        32        42        52        62        72        82        92       102       112       122     
           NTF2_MOUSE     3 DKPIWEQIGSSFIQHYYQLFDNDRTQLGAIYIDASCLTWEGQQFQGKAAIVEKLSSLPFQKIQHSITAQDHQPTPDSCIISMVVGQLKADEDPIMGFHQMFLLKNINDAWVCTNDMFRLALHNFG 127
               SCOP domains d1gy6a_ A: Nuclear transport factor-2 (NTF2)                                                                                  SCOP domains
               CATH domains 1gy6A00 A:3-127  [code=3.10.450.50, no name defined]                                                                          CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeeeee..eeeehhhhhhhhhhhh....eeeeeeeeeeee.....eeeeeeeeeee.....eeeeeeeeeeee..eeeeeeeeeee...... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ----------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) -------NTF2_DOMAIN  PDB: A:10-121 UniProt: 10-121                                                                      ------ PROSITE (3)
                 Transcript ----------------------------------------------------------------------------------------------------------------------------- Transcript
                 1gy6 A   3 DKPIWEQIGSSFIQHYYQLFDNDRTQLGAIYIDASCLTWEGQQFQGKAAIVEKLSSLPFQKIQHSITAQDHQPTPDSCIISMVVGQLKADEDPIMGFHQMFLLKNINDAWVCTNDMFRLALHNFG 127
                                    12        22        32        42        52        62        72        82        92       102       112       122

Chain A from PDB  Type:PROTEIN  Length:125
 aligned with NTF2_RAT | P61972 from UniProtKB/Swiss-Prot  Length:127

    Alignment length:125
                                    12        22        32        42        52        62        72        82        92       102       112       122     
             NTF2_RAT     3 DKPIWEQIGSSFIQHYYQLFDNDRTQLGAIYIDASCLTWEGQQFQGKAAIVEKLSSLPFQKIQHSITAQDHQPTPDSCIISMVVGQLKADEDPIMGFHQMFLLKNINDAWVCTNDMFRLALHNFG 127
               SCOP domains d1gy6a_ A: Nuclear transport factor-2 (NTF2)                                                                                  SCOP domains
               CATH domains 1gy6A00 A:3-127  [code=3.10.450.50, no name defined]                                                                          CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeeeee..eeeehhhhhhhhhhhh....eeeeeeeeeeee.....eeeeeeeeeee.....eeeeeeeeeeee..eeeeeeeeeee...... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------NTF2_DOMAIN  PDB: A:10-121 UniProt: 10-121                                                                      ------ PROSITE
               Transcript 1 Exon 1.2  PDB: A:3-33          Exon 1.3  PDB: A:34-57  Exon 1.4  PDB: A:58-90           Exon 1.5  PDB: A:91-127               Transcript 1
                 1gy6 A   3 DKPIWEQIGSSFIQHYYQLFDNDRTQLGAIYIDASCLTWEGQQFQGKAAIVEKLSSLPFQKIQHSITAQDHQPTPDSCIISMVVGQLKADEDPIMGFHQMFLLKNINDAWVCTNDMFRLALHNFG 127
                                    12        22        32        42        52        62        72        82        92       102       112       122

Chain B from PDB  Type:PROTEIN  Length:123
 aligned with NTF2_HUMAN | P61970 from UniProtKB/Swiss-Prot  Length:127

    Alignment length:123
                                    12        22        32        42        52        62        72        82        92       102       112       122   
           NTF2_HUMAN     3 DKPIWEQIGSSFIQHYYQLFDNDRTQLGAIYIDASCLTWEGQQFQGKAAIVEKLSSLPFQKIQHSITAQDHQPTPDSCIISMVVGQLKADEDPIMGFHQMFLLKNINDAWVCTNDMFRLALHN 125
               SCOP domains d1gy6b_ B: Nuclear transport factor-2 (NTF2)                                                                                SCOP domains
               CATH domains 1gy6B00 B:3-125  [code=3.10.450.50, no name defined]                                                                        CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeeeee..eeeehhhhhhhhhhhh....eeeeeeeeeeee.....eeeeeeeeeee.....eeeeeeeeeee....eeeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) -------NTF2_DOMAIN  PDB: B:10-121 UniProt: 10-121                                                                      ---- PROSITE (2)
                 Transcript --------------------------------------------------------------------------------------------------------------------------- Transcript
                 1gy6 B   3 DKPIWEQIGSSFIQHYYQLFDNDRTQLGAIYIDASCLTWEGQQFQGKAAIVEKLSSLPFQKIQHSITAQDHQPTPDSCIISMVVGQLKADEDPIMGFHQMFLLKNINDAWVCTNDMFRLALHN 125
                                    12        22        32        42        52        62        72        82        92       102       112       122

Chain B from PDB  Type:PROTEIN  Length:123
 aligned with NTF2_MOUSE | P61971 from UniProtKB/Swiss-Prot  Length:127

    Alignment length:123
                                    12        22        32        42        52        62        72        82        92       102       112       122   
           NTF2_MOUSE     3 DKPIWEQIGSSFIQHYYQLFDNDRTQLGAIYIDASCLTWEGQQFQGKAAIVEKLSSLPFQKIQHSITAQDHQPTPDSCIISMVVGQLKADEDPIMGFHQMFLLKNINDAWVCTNDMFRLALHN 125
               SCOP domains d1gy6b_ B: Nuclear transport factor-2 (NTF2)                                                                                SCOP domains
               CATH domains 1gy6B00 B:3-125  [code=3.10.450.50, no name defined]                                                                        CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeeeee..eeeehhhhhhhhhhhh....eeeeeeeeeeee.....eeeeeeeeeee.....eeeeeeeeeee....eeeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) --------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) -------NTF2_DOMAIN  PDB: B:10-121 UniProt: 10-121                                                                      ---- PROSITE (3)
                 Transcript --------------------------------------------------------------------------------------------------------------------------- Transcript
                 1gy6 B   3 DKPIWEQIGSSFIQHYYQLFDNDRTQLGAIYIDASCLTWEGQQFQGKAAIVEKLSSLPFQKIQHSITAQDHQPTPDSCIISMVVGQLKADEDPIMGFHQMFLLKNINDAWVCTNDMFRLALHN 125
                                    12        22        32        42        52        62        72        82        92       102       112       122

Chain B from PDB  Type:PROTEIN  Length:123
 aligned with NTF2_RAT | P61972 from UniProtKB/Swiss-Prot  Length:127

    Alignment length:123
                                    12        22        32        42        52        62        72        82        92       102       112       122   
             NTF2_RAT     3 DKPIWEQIGSSFIQHYYQLFDNDRTQLGAIYIDASCLTWEGQQFQGKAAIVEKLSSLPFQKIQHSITAQDHQPTPDSCIISMVVGQLKADEDPIMGFHQMFLLKNINDAWVCTNDMFRLALHN 125
               SCOP domains d1gy6b_ B: Nuclear transport factor-2 (NTF2)                                                                                SCOP domains
               CATH domains 1gy6B00 B:3-125  [code=3.10.450.50, no name defined]                                                                        CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeeeee..eeeehhhhhhhhhhhh....eeeeeeeeeeee.....eeeeeeeeeee.....eeeeeeeeeee....eeeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------NTF2_DOMAIN  PDB: B:10-121 UniProt: 10-121                                                                      ---- PROSITE
               Transcript 1 Exon 1.2  PDB: B:3-33          Exon 1.3  PDB: B:34-57  Exon 1.4  PDB: B:58-90           Exon 1.5  PDB: B:91-125             Transcript 1
                 1gy6 B   3 DKPIWEQIGSSFIQHYYQLFDNDRTQLGAIYIDASCLTWEGQQFQGKAAIVEKLSSLPFQKIQHSITAQDHQPTPDSCIISMVVGQLKADEDPIMGFHQMFLLKNINDAWVCTNDMFRLALHN 125
                                    12        22        32        42        52        62        72        82        92       102       112       122

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a+b) (23004)

Fold: Cystatin-like (403)

Superfamily: NTF2-like (231)

Family: NTF2-like (25)

Protein domain: Nuclear transport factor-2 (NTF2) (14)

Norway rat (Rattus norvegicus) [TaxId: 10116] (10)

1a	d1gy6a_	A:
1b	d1gy6b_	B:

Asymmetric/Biological Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: Roll (3276)

Topology: Nuclear Transport Factor 2; Chain: A, (517)

Homologous Superfamily: [code=3.10.450.50, no name defined] (113)

Rat (Rattus norvegicus) (2)

1a	1gy6A00	A:3-127
1b	1gy6B00	B:3-125

(no "Pfam Domain" information available for 1GY6)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B (NTF2_HUMAN | P61970)

molecular function
	GO:0008536	Ran GTPase binding	Interacting selectively and non-covalently with Ran, a conserved Ras-like GTP-binding protein, implicated in nucleocytoplasmic transport, cell cycle progression, spindle assembly, nuclear organization and nuclear envelope (NE) assembly.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
	GO:0005215	transporter activity	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells.
biological process
	GO:1904046	negative regulation of vascular endothelial growth factor production	Any process that stops, prevents or reduces the frequency, rate or extent of vascular endothelial growth factor production.
	GO:0042307	positive regulation of protein import into nucleus	Any process that activates or increases the frequency, rate or extent of movement of proteins from the cytoplasm into the nucleus.
	GO:0006611	protein export from nucleus	The directed movement of a protein from the nucleus into the cytoplasm.
	GO:0000060	protein import into nucleus, translocation	A protein transport process that contributes to protein import into the nucleus, and that results in the vectorial transfer of a cargo-carrier protein complex through the nuclear pore complex from the cytoplasmic side to the nucleoplasmic side of the nuclear envelope.
	GO:0015031	protein transport	The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
	GO:0006810	transport	The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0005829	cytosol	The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
	GO:0070062	extracellular exosome	A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
	GO:0005622	intracellular	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
	GO:0005640	nuclear outer membrane	The outer, i.e. cytoplasm-facing, lipid bilayer of the nuclear envelope; continuous with the endoplasmic reticulum of the cell and sometimes studded with ribosomes.
	GO:0005643	nuclear pore	Any of the numerous similar discrete openings in the nuclear envelope of a eukaryotic cell, where the inner and outer nuclear membranes are joined.
	GO:0044613	nuclear pore central transport channel	The central substructure of the nuclear pore complex (NPC), through which nucleocytoplasmic transport of RNAs, proteins and small molecules occurs. The central transport channel is filled with FG-nucleoporins, which form a selective barrier and provide a series of binding sites for transporter proteins. Characterized S. cerevisiae FG-nucleoporins include Nup159p, Nup145Np, Nup116p, Nup100p, Nsp1p, Nup57p, Nup49p, Nup42p, Nup53p, Nup59p/Asm4p, Nup60p and Nup1. Characterized vertebrate FG-nucleoporins include Nup214, Nup98, Nup62, Nup54, Nup58/45, NLP1, and Nup153.

Chain A,B (NTF2_MOUSE | P61971)

molecular function
	GO:0008536	Ran GTPase binding	Interacting selectively and non-covalently with Ran, a conserved Ras-like GTP-binding protein, implicated in nucleocytoplasmic transport, cell cycle progression, spindle assembly, nuclear organization and nuclear envelope (NE) assembly.
	GO:0008565	protein transporter activity	Enables the directed movement of proteins into, out of or within a cell, or between cells.
biological process
	GO:0006611	protein export from nucleus	The directed movement of a protein from the nucleus into the cytoplasm.
	GO:0006606	protein import into nucleus	The directed movement of a protein from the cytoplasm to the nucleus.
	GO:0000060	protein import into nucleus, translocation	A protein transport process that contributes to protein import into the nucleus, and that results in the vectorial transfer of a cargo-carrier protein complex through the nuclear pore complex from the cytoplasmic side to the nucleoplasmic side of the nuclear envelope.
	GO:0015031	protein transport	The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
	GO:0006810	transport	The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0070062	extracellular exosome	A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
	GO:0005622	intracellular	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.

Chain A,B (NTF2_RAT | P61972)

molecular function
	GO:0008536	Ran GTPase binding	Interacting selectively and non-covalently with Ran, a conserved Ras-like GTP-binding protein, implicated in nucleocytoplasmic transport, cell cycle progression, spindle assembly, nuclear organization and nuclear envelope (NE) assembly.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
	GO:1904046	negative regulation of vascular endothelial growth factor production	Any process that stops, prevents or reduces the frequency, rate or extent of vascular endothelial growth factor production.
	GO:0042307	positive regulation of protein import into nucleus	Any process that activates or increases the frequency, rate or extent of movement of proteins from the cytoplasm into the nucleus.
	GO:0006611	protein export from nucleus	The directed movement of a protein from the nucleus into the cytoplasm.
	GO:0000060	protein import into nucleus, translocation	A protein transport process that contributes to protein import into the nucleus, and that results in the vectorial transfer of a cargo-carrier protein complex through the nuclear pore complex from the cytoplasmic side to the nucleoplasmic side of the nuclear envelope.
	GO:0015031	protein transport	The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
	GO:0006810	transport	The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0070062	extracellular exosome	A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
	GO:0005622	intracellular	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
	GO:0005640	nuclear outer membrane	The outer, i.e. cytoplasm-facing, lipid bilayer of the nuclear envelope; continuous with the endoplasmic reticulum of the cell and sometimes studded with ribosomes.
	GO:0044613	nuclear pore central transport channel	The central substructure of the nuclear pore complex (NPC), through which nucleocytoplasmic transport of RNAs, proteins and small molecules occurs. The central transport channel is filled with FG-nucleoporins, which form a selective barrier and provide a series of binding sites for transporter proteins. Characterized S. cerevisiae FG-nucleoporins include Nup159p, Nup145Np, Nup116p, Nup100p, Nsp1p, Nup57p, Nup49p, Nup42p, Nup53p, Nup59p/Asm4p, Nup60p and Nup1. Characterized vertebrate FG-nucleoporins include Nup214, Nup98, Nup62, Nup54, Nup58/45, NLP1, and Nup153.

Asymmetric/Biological Unit
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	1gy6
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	NTF2_MOUSE \| P61971
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	NTF2_RAT \| P61972
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UniProtKB/Swiss-Prot
	NTF2_HUMAN \| P61970	:	1gy5 1qma
	NTF2_MOUSE \| P61971	:	1gy5 1qma
	NTF2_RAT \| P61972	:	1a2k 1ar0 1ask 1gy5 1jb2 1jb4 1jb5 1oun 1qma 1u5o 5bxq

1a2k	GDPRAN-NTF2 COMPLEX
1ar0	NUCLEAR TRANSPORT FACTOR 2 (NTF2) E42K MUTANT
1ask	NUCLEAR TRANSPORT FACTOR 2 (NTF2) H66A MUTANT
1gy5	D92N,D94N DOUBLE POINT MUTANT OF HUMAN NUCLEAR TRANSPORT FACTOR 2 (NTF2)
1gy7	N77Y POINT MUTANT OF S.CEREVISIAE NTF2
1gyb	N77Y POINT MUTANT OF YNTF2 BOUND TO FXFG NUCLEOPORIN REPEAT
1jb2	CRYSTAL STRUCTURE OF NTF2 M84E MUTANT
1jb4	CRYSTAL STRUCTURE OF NTF2 M102E MUTANT
1jb5	CRYSTAL STRUCTURE OF NTF2 M118E MUTANT
1oun	THE 1.6 A RESOLUTION CRYSTAL STRUCTURE OF NUCLEAR TRANSPORT FACTOR 2 (NTF2)
1qma	NUCLEAR TRANSPORT FACTOR 2 (NTF2) W7A MUTANT

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (0, 0)

Sites (0, 0)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 2)

Exons (4, 8)

Sequences/Alignments

Classification and Annotation

SCOP Domains (1, 2)

CATH Domains (1, 2)

Pfam Domains (0, 0)

Gene Ontology (18, 39)

Visualization

Interactive Views

Still Images

Databases and Analysis Tools

Databases

Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File