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(-) Description

Title :  NUCLEAR TRANSPORT FACTOR 2 (NTF2) W7A MUTANT
 
Authors :  R. Bayliss, K. Ribbeck, D. Akin, H. M. Kent, C. M. Feldherr, D. Gorlich, M. J. Stewart
Date :  23 Sep 99  (Deposition) - 03 Feb 00  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Transport (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  R. Bayliss, K. Ribbeck, D. Akin, H. M. Kent, C. M. Feldherr, D. Gorlich, M. J. Stewart
Interaction Betweeen Ntf2 And Xfxfg-Containing Nucleoporins Is Required To Mediate Nuclear Import Of Ran-Gdp
J. Mol. Biol. V. 293 579 1999
PubMed-ID: 10543952  |  Reference-DOI: 10.1006/JMBI.1999.3166

(-) Compounds

Molecule 1 - NUCLEAR TRANSPORT FACTOR 2
    ChainsA, B, C, D
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPET VECTOR
    Expression System StrainBL21(DE3)
    Expression System Taxid469008
    MutationYES
    OrganLIVER
    Organism CommonRAT
    Organism ScientificRATTUS NORVEGICUS
    Organism Taxid10116
    SynonymNTF2, PLACENTAL PROTEIN 15, PP15

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit ABCD
Biological Unit 1 (1x)AB  
Biological Unit 2 (1x)  CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1QMA)

(-) Sites  (0, 0)

(no "Site" information available for 1QMA)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1QMA)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1QMA)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1QMA)

(-) PROSITE Motifs  (1, 4)

Asymmetric Unit (1, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1NTF2_DOMAINPS50177 Nuclear transport factor 2 domain profile.NTF2_HUMAN10-121
 
 
 
  4A:10-121
B:10-121
C:10-121
D:10-121
NTF2_MOUSE10-121
 
 
 
  4A:10-121
B:10-121
C:10-121
D:10-121
NTF2_RAT10-121
 
 
 
  4A:10-121
B:10-121
C:10-121
D:10-121
Biological Unit 1 (1, 6)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1NTF2_DOMAINPS50177 Nuclear transport factor 2 domain profile.NTF2_HUMAN10-121
 
 
 
  2A:10-121
B:10-121
-
-
NTF2_MOUSE10-121
 
 
 
  2A:10-121
B:10-121
-
-
NTF2_RAT10-121
 
 
 
  2A:10-121
B:10-121
-
-
Biological Unit 2 (1, 6)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1NTF2_DOMAINPS50177 Nuclear transport factor 2 domain profile.NTF2_HUMAN10-121
 
 
 
  2-
-
C:10-121
D:10-121
NTF2_MOUSE10-121
 
 
 
  2-
-
C:10-121
D:10-121
NTF2_RAT10-121
 
 
 
  2-
-
C:10-121
D:10-121

(-) Exons   (4, 16)

Asymmetric Unit (4, 16)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1ENSRNOT000000256081ENSRNOE00000363046chr19:35697564-3569759633NTF2_RAT-00--
1.2ENSRNOT000000256082ENSRNOE00000230100chr19:35711999-35712125127NTF2_RAT1-33334A:2-33
B:4-33
C:2-33
D:4-33
32
30
32
30
1.3ENSRNOT000000256083ENSRNOE00000230088chr19:35714265-3571433672NTF2_RAT34-57244A:34-57
B:34-57
C:34-57
D:34-57
24
24
24
24
1.4ENSRNOT000000256084ENSRNOE00000230084chr19:35714421-3571451999NTF2_RAT58-90334A:58-90
B:58-90
C:58-90
D:58-90
33
33
33
33
1.5ENSRNOT000000256085ENSRNOE00000183551chr19:35717241-357188361596NTF2_RAT91-127374A:91-127
B:91-127
C:91-127
D:91-127
37
37
37
37

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:126
 aligned with NTF2_HUMAN | P61970 from UniProtKB/Swiss-Prot  Length:127

    Alignment length:126
                                    11        21        31        41        51        61        71        81        91       101       111       121      
           NTF2_HUMAN     2 GDKPIWEQIGSSFIQHYYQLFDNDRTQLGAIYIDASCLTWEGQQFQGKAAIVEKLSSLPFQKIQHSITAQDHQPTPDSCIISMVVGQLKADEDPIMGFHQMFLLKNINDAWVCTNDMFRLALHNFG 127
               SCOP domains d1qmaa_ A: Nuclear transport factor-2 (NTF2)                                                                                   SCOP domains
               CATH domains 1qmaA00 A:2-127  [code=3.10.450.50, no name defined]                                                                           CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhh......eeee..eeeehhhhhhhhhhhh....eeeeeeeeeeee.....eeeeeeeeeee.....eeeeeeeeeee....eeeeeeeeee...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (2) --------NTF2_DOMAIN  PDB: A:10-121 UniProt: 10-121                                                                      ------ PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1qma A   2 GDKPIAEQIGSSFIQHYYQLFDNDRTQLGAIYIDASCLTWEGQQFQGKAAIVEKLSSLPFQKIQHSITAQDHQPTPDSCIISMVVGQLKADEDPIMGFHQMFLLKNINDAWVCTNDMFRLALHNFG 127
                                    11        21        31        41        51        61        71        81        91       101       111       121      

Chain A from PDB  Type:PROTEIN  Length:126
 aligned with NTF2_MOUSE | P61971 from UniProtKB/Swiss-Prot  Length:127

    Alignment length:126
                                    11        21        31        41        51        61        71        81        91       101       111       121      
           NTF2_MOUSE     2 GDKPIWEQIGSSFIQHYYQLFDNDRTQLGAIYIDASCLTWEGQQFQGKAAIVEKLSSLPFQKIQHSITAQDHQPTPDSCIISMVVGQLKADEDPIMGFHQMFLLKNINDAWVCTNDMFRLALHNFG 127
               SCOP domains d1qmaa_ A: Nuclear transport factor-2 (NTF2)                                                                                   SCOP domains
               CATH domains 1qmaA00 A:2-127  [code=3.10.450.50, no name defined]                                                                           CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhh......eeee..eeeehhhhhhhhhhhh....eeeeeeeeeeee.....eeeeeeeeeee.....eeeeeeeeeee....eeeeeeeeee...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE --------NTF2_DOMAIN  PDB: A:10-121 UniProt: 10-121                                                                      ------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1qma A   2 GDKPIAEQIGSSFIQHYYQLFDNDRTQLGAIYIDASCLTWEGQQFQGKAAIVEKLSSLPFQKIQHSITAQDHQPTPDSCIISMVVGQLKADEDPIMGFHQMFLLKNINDAWVCTNDMFRLALHNFG 127
                                    11        21        31        41        51        61        71        81        91       101       111       121      

Chain A from PDB  Type:PROTEIN  Length:126
 aligned with NTF2_RAT | P61972 from UniProtKB/Swiss-Prot  Length:127

    Alignment length:126
                                    11        21        31        41        51        61        71        81        91       101       111       121      
             NTF2_RAT     2 GDKPIWEQIGSSFIQHYYQLFDNDRTQLGAIYIDASCLTWEGQQFQGKAAIVEKLSSLPFQKIQHSITAQDHQPTPDSCIISMVVGQLKADEDPIMGFHQMFLLKNINDAWVCTNDMFRLALHNFG 127
               SCOP domains d1qmaa_ A: Nuclear transport factor-2 (NTF2)                                                                                   SCOP domains
               CATH domains 1qmaA00 A:2-127  [code=3.10.450.50, no name defined]                                                                           CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhh......eeee..eeeehhhhhhhhhhhh....eeeeeeeeeeee.....eeeeeeeeeee.....eeeeeeeeeee....eeeeeeeeee...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (2) ------------------------------------------------------------------------------------------------------------------------------ PROSITE (2)
                PROSITE (3) --------NTF2_DOMAIN  PDB: A:10-121 UniProt: 10-121                                                                      ------ PROSITE (3)
               Transcript 1 Exon 1.2  PDB: A:2-33           Exon 1.3  PDB: A:34-57  Exon 1.4  PDB: A:58-90           Exon 1.5  PDB: A:91-127               Transcript 1
                 1qma A   2 GDKPIAEQIGSSFIQHYYQLFDNDRTQLGAIYIDASCLTWEGQQFQGKAAIVEKLSSLPFQKIQHSITAQDHQPTPDSCIISMVVGQLKADEDPIMGFHQMFLLKNINDAWVCTNDMFRLALHNFG 127
                                    11        21        31        41        51        61        71        81        91       101       111       121      

Chain B from PDB  Type:PROTEIN  Length:124
 aligned with NTF2_HUMAN | P61970 from UniProtKB/Swiss-Prot  Length:127

    Alignment length:124
                                    13        23        33        43        53        63        73        83        93       103       113       123    
           NTF2_HUMAN     4 KPIWEQIGSSFIQHYYQLFDNDRTQLGAIYIDASCLTWEGQQFQGKAAIVEKLSSLPFQKIQHSITAQDHQPTPDSCIISMVVGQLKADEDPIMGFHQMFLLKNINDAWVCTNDMFRLALHNFG 127
               SCOP domains d1qmab_ B: Nuclear transport factor-2 (NTF2)                                                                                 SCOP domains
               CATH domains 1qmaB00 B:4-127  [code=3.10.450.50, no name defined]                                                                         CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhh....hhh......eeee..eeeehhhhhhhhhhh.....eeeeeeeeeeee.....eeeeeeeeeee.....eeeeeeeeeeee..eeeeeeeeeee...... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ------NTF2_DOMAIN  PDB: B:10-121 UniProt: 10-121                                                                      ------ PROSITE (2)
                 Transcript ---------------------------------------------------------------------------------------------------------------------------- Transcript
                 1qma B   4 KPIAEQIGSSFIQHYYQLFDNDRTQLGAIYIDASCLTWEGQQFQGKAAIVEKLSSLPFQKIQHSITAQDHQPTPDSCIISMVVGQLKADEDPIMGFHQMFLLKNINDAWVCTNDMFRLALHNFG 127
                                    13        23        33        43        53        63        73        83        93       103       113       123    

Chain B from PDB  Type:PROTEIN  Length:124
 aligned with NTF2_MOUSE | P61971 from UniProtKB/Swiss-Prot  Length:127

    Alignment length:124
                                    13        23        33        43        53        63        73        83        93       103       113       123    
           NTF2_MOUSE     4 KPIWEQIGSSFIQHYYQLFDNDRTQLGAIYIDASCLTWEGQQFQGKAAIVEKLSSLPFQKIQHSITAQDHQPTPDSCIISMVVGQLKADEDPIMGFHQMFLLKNINDAWVCTNDMFRLALHNFG 127
               SCOP domains d1qmab_ B: Nuclear transport factor-2 (NTF2)                                                                                 SCOP domains
               CATH domains 1qmaB00 B:4-127  [code=3.10.450.50, no name defined]                                                                         CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhh....hhh......eeee..eeeehhhhhhhhhhh.....eeeeeeeeeeee.....eeeeeeeeeee.....eeeeeeeeeeee..eeeeeeeeeee...... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------NTF2_DOMAIN  PDB: B:10-121 UniProt: 10-121                                                                      ------ PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------- Transcript
                 1qma B   4 KPIAEQIGSSFIQHYYQLFDNDRTQLGAIYIDASCLTWEGQQFQGKAAIVEKLSSLPFQKIQHSITAQDHQPTPDSCIISMVVGQLKADEDPIMGFHQMFLLKNINDAWVCTNDMFRLALHNFG 127
                                    13        23        33        43        53        63        73        83        93       103       113       123    

Chain B from PDB  Type:PROTEIN  Length:124
 aligned with NTF2_RAT | P61972 from UniProtKB/Swiss-Prot  Length:127

    Alignment length:124
                                    13        23        33        43        53        63        73        83        93       103       113       123    
             NTF2_RAT     4 KPIWEQIGSSFIQHYYQLFDNDRTQLGAIYIDASCLTWEGQQFQGKAAIVEKLSSLPFQKIQHSITAQDHQPTPDSCIISMVVGQLKADEDPIMGFHQMFLLKNINDAWVCTNDMFRLALHNFG 127
               SCOP domains d1qmab_ B: Nuclear transport factor-2 (NTF2)                                                                                 SCOP domains
               CATH domains 1qmaB00 B:4-127  [code=3.10.450.50, no name defined]                                                                         CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhh....hhh......eeee..eeeehhhhhhhhhhh.....eeeeeeeeeeee.....eeeeeeeeeee.....eeeeeeeeeeee..eeeeeeeeeee...... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ---------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) ------NTF2_DOMAIN  PDB: B:10-121 UniProt: 10-121                                                                      ------ PROSITE (3)
               Transcript 1 Exon 1.2  PDB: B:4-33         Exon 1.3  PDB: B:34-57  Exon 1.4  PDB: B:58-90           Exon 1.5  PDB: B:91-127               Transcript 1
                 1qma B   4 KPIAEQIGSSFIQHYYQLFDNDRTQLGAIYIDASCLTWEGQQFQGKAAIVEKLSSLPFQKIQHSITAQDHQPTPDSCIISMVVGQLKADEDPIMGFHQMFLLKNINDAWVCTNDMFRLALHNFG 127
                                    13        23        33        43        53        63        73        83        93       103       113       123    

Chain C from PDB  Type:PROTEIN  Length:126
 aligned with NTF2_HUMAN | P61970 from UniProtKB/Swiss-Prot  Length:127

    Alignment length:126
                                    11        21        31        41        51        61        71        81        91       101       111       121      
           NTF2_HUMAN     2 GDKPIWEQIGSSFIQHYYQLFDNDRTQLGAIYIDASCLTWEGQQFQGKAAIVEKLSSLPFQKIQHSITAQDHQPTPDSCIISMVVGQLKADEDPIMGFHQMFLLKNINDAWVCTNDMFRLALHNFG 127
               SCOP domains d1qmac_ C: Nuclear transport factor-2 (NTF2)                                                                                   SCOP domains
               CATH domains 1qmaC00 C:2-127  [code=3.10.450.50, no name defined]                                                                           CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhh......eeee..eeeehhhhhhhhhhhh....eeeeeeeeeeee.....eeeeeeeeeee.....eeeeeeeeeee....eeeeeeeeee...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (2) --------NTF2_DOMAIN  PDB: C:10-121 UniProt: 10-121                                                                      ------ PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1qma C   2 GDKPIAEQIGSSFIQHYYQLFDNDRTQLGAIYIDASCLTWEGQQFQGKAAIVEKLSSLPFQKIQHSITAQDHQPTPDSCIISMVVGQLKADEDPIMGFHQMFLLKNINDAWVCTNDMFRLALHNFG 127
                                    11        21        31        41        51        61        71        81        91       101       111       121      

Chain C from PDB  Type:PROTEIN  Length:126
 aligned with NTF2_MOUSE | P61971 from UniProtKB/Swiss-Prot  Length:127

    Alignment length:126
                                    11        21        31        41        51        61        71        81        91       101       111       121      
           NTF2_MOUSE     2 GDKPIWEQIGSSFIQHYYQLFDNDRTQLGAIYIDASCLTWEGQQFQGKAAIVEKLSSLPFQKIQHSITAQDHQPTPDSCIISMVVGQLKADEDPIMGFHQMFLLKNINDAWVCTNDMFRLALHNFG 127
               SCOP domains d1qmac_ C: Nuclear transport factor-2 (NTF2)                                                                                   SCOP domains
               CATH domains 1qmaC00 C:2-127  [code=3.10.450.50, no name defined]                                                                           CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhh......eeee..eeeehhhhhhhhhhhh....eeeeeeeeeeee.....eeeeeeeeeee.....eeeeeeeeeee....eeeeeeeeee...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE --------NTF2_DOMAIN  PDB: C:10-121 UniProt: 10-121                                                                      ------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1qma C   2 GDKPIAEQIGSSFIQHYYQLFDNDRTQLGAIYIDASCLTWEGQQFQGKAAIVEKLSSLPFQKIQHSITAQDHQPTPDSCIISMVVGQLKADEDPIMGFHQMFLLKNINDAWVCTNDMFRLALHNFG 127
                                    11        21        31        41        51        61        71        81        91       101       111       121      

Chain C from PDB  Type:PROTEIN  Length:126
 aligned with NTF2_RAT | P61972 from UniProtKB/Swiss-Prot  Length:127

    Alignment length:126
                                    11        21        31        41        51        61        71        81        91       101       111       121      
             NTF2_RAT     2 GDKPIWEQIGSSFIQHYYQLFDNDRTQLGAIYIDASCLTWEGQQFQGKAAIVEKLSSLPFQKIQHSITAQDHQPTPDSCIISMVVGQLKADEDPIMGFHQMFLLKNINDAWVCTNDMFRLALHNFG 127
               SCOP domains d1qmac_ C: Nuclear transport factor-2 (NTF2)                                                                                   SCOP domains
               CATH domains 1qmaC00 C:2-127  [code=3.10.450.50, no name defined]                                                                           CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhh......eeee..eeeehhhhhhhhhhhh....eeeeeeeeeeee.....eeeeeeeeeee.....eeeeeeeeeee....eeeeeeeeee...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (2) ------------------------------------------------------------------------------------------------------------------------------ PROSITE (2)
                PROSITE (3) --------NTF2_DOMAIN  PDB: C:10-121 UniProt: 10-121                                                                      ------ PROSITE (3)
               Transcript 1 Exon 1.2  PDB: C:2-33           Exon 1.3  PDB: C:34-57  Exon 1.4  PDB: C:58-90           Exon 1.5  PDB: C:91-127               Transcript 1
                 1qma C   2 GDKPIAEQIGSSFIQHYYQLFDNDRTQLGAIYIDASCLTWEGQQFQGKAAIVEKLSSLPFQKIQHSITAQDHQPTPDSCIISMVVGQLKADEDPIMGFHQMFLLKNINDAWVCTNDMFRLALHNFG 127
                                    11        21        31        41        51        61        71        81        91       101       111       121      

Chain D from PDB  Type:PROTEIN  Length:124
 aligned with NTF2_HUMAN | P61970 from UniProtKB/Swiss-Prot  Length:127

    Alignment length:124
                                    13        23        33        43        53        63        73        83        93       103       113       123    
           NTF2_HUMAN     4 KPIWEQIGSSFIQHYYQLFDNDRTQLGAIYIDASCLTWEGQQFQGKAAIVEKLSSLPFQKIQHSITAQDHQPTPDSCIISMVVGQLKADEDPIMGFHQMFLLKNINDAWVCTNDMFRLALHNFG 127
               SCOP domains d1qmad_ D: Nuclear transport factor-2 (NTF2)                                                                                 SCOP domains
               CATH domains 1qmaD00 D:4-127  [code=3.10.450.50, no name defined]                                                                         CATH domains
           Pfam domains (1) ------NTF2-1qmaD01 D:10-121                                                                                           ------ Pfam domains (1)
           Pfam domains (2) ------NTF2-1qmaD02 D:10-121                                                                                           ------ Pfam domains (2)
           Pfam domains (3) ------NTF2-1qmaD03 D:10-121                                                                                           ------ Pfam domains (3)
           Pfam domains (4) ------NTF2-1qmaD04 D:10-121                                                                                           ------ Pfam domains (4)
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhh....hhh......eeee..eeeehhhhhhhhhhh.....eeeeeeeeeeee.....eeeeeeeeeee.....eeeeeeeeeeee..eeeeeeeeeee...... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ------NTF2_DOMAIN  PDB: D:10-121 UniProt: 10-121                                                                      ------ PROSITE (2)
                 Transcript ---------------------------------------------------------------------------------------------------------------------------- Transcript
                 1qma D   4 KPIAEQIGSSFIQHYYQLFDNDRTQLGAIYIDASCLTWEGQQFQGKAAIVEKLSSLPFQKIQHSITAQDHQPTPDSCIISMVVGQLKADEDPIMGFHQMFLLKNINDAWVCTNDMFRLALHNFG 127
                                    13        23        33        43        53        63        73        83        93       103       113       123    

Chain D from PDB  Type:PROTEIN  Length:124
 aligned with NTF2_MOUSE | P61971 from UniProtKB/Swiss-Prot  Length:127

    Alignment length:124
                                    13        23        33        43        53        63        73        83        93       103       113       123    
           NTF2_MOUSE     4 KPIWEQIGSSFIQHYYQLFDNDRTQLGAIYIDASCLTWEGQQFQGKAAIVEKLSSLPFQKIQHSITAQDHQPTPDSCIISMVVGQLKADEDPIMGFHQMFLLKNINDAWVCTNDMFRLALHNFG 127
               SCOP domains d1qmad_ D: Nuclear transport factor-2 (NTF2)                                                                                 SCOP domains
               CATH domains 1qmaD00 D:4-127  [code=3.10.450.50, no name defined]                                                                         CATH domains
           Pfam domains (1) ------NTF2-1qmaD01 D:10-121                                                                                           ------ Pfam domains (1)
           Pfam domains (2) ------NTF2-1qmaD02 D:10-121                                                                                           ------ Pfam domains (2)
           Pfam domains (3) ------NTF2-1qmaD03 D:10-121                                                                                           ------ Pfam domains (3)
           Pfam domains (4) ------NTF2-1qmaD04 D:10-121                                                                                           ------ Pfam domains (4)
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhh....hhh......eeee..eeeehhhhhhhhhhh.....eeeeeeeeeeee.....eeeeeeeeeee.....eeeeeeeeeeee..eeeeeeeeeee...... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------NTF2_DOMAIN  PDB: D:10-121 UniProt: 10-121                                                                      ------ PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------- Transcript
                 1qma D   4 KPIAEQIGSSFIQHYYQLFDNDRTQLGAIYIDASCLTWEGQQFQGKAAIVEKLSSLPFQKIQHSITAQDHQPTPDSCIISMVVGQLKADEDPIMGFHQMFLLKNINDAWVCTNDMFRLALHNFG 127
                                    13        23        33        43        53        63        73        83        93       103       113       123    

Chain D from PDB  Type:PROTEIN  Length:124
 aligned with NTF2_RAT | P61972 from UniProtKB/Swiss-Prot  Length:127

    Alignment length:124
                                    13        23        33        43        53        63        73        83        93       103       113       123    
             NTF2_RAT     4 KPIWEQIGSSFIQHYYQLFDNDRTQLGAIYIDASCLTWEGQQFQGKAAIVEKLSSLPFQKIQHSITAQDHQPTPDSCIISMVVGQLKADEDPIMGFHQMFLLKNINDAWVCTNDMFRLALHNFG 127
               SCOP domains d1qmad_ D: Nuclear transport factor-2 (NTF2)                                                                                 SCOP domains
               CATH domains 1qmaD00 D:4-127  [code=3.10.450.50, no name defined]                                                                         CATH domains
           Pfam domains (1) ------NTF2-1qmaD01 D:10-121                                                                                           ------ Pfam domains (1)
           Pfam domains (2) ------NTF2-1qmaD02 D:10-121                                                                                           ------ Pfam domains (2)
           Pfam domains (3) ------NTF2-1qmaD03 D:10-121                                                                                           ------ Pfam domains (3)
           Pfam domains (4) ------NTF2-1qmaD04 D:10-121                                                                                           ------ Pfam domains (4)
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhh....hhh......eeee..eeeehhhhhhhhhhh.....eeeeeeeeeeee.....eeeeeeeeeee.....eeeeeeeeeeee..eeeeeeeeeee...... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ---------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) ------NTF2_DOMAIN  PDB: D:10-121 UniProt: 10-121                                                                      ------ PROSITE (3)
               Transcript 1 Exon 1.2  PDB: D:4-33         Exon 1.3  PDB: D:34-57  Exon 1.4  PDB: D:58-90           Exon 1.5  PDB: D:91-127               Transcript 1
                 1qma D   4 KPIAEQIGSSFIQHYYQLFDNDRTQLGAIYIDASCLTWEGQQFQGKAAIVEKLSSLPFQKIQHSITAQDHQPTPDSCIISMVVGQLKADEDPIMGFHQMFLLKNINDAWVCTNDMFRLALHNFG 127
                                    13        23        33        43        53        63        73        83        93       103       113       123    

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric Unit

(-) CATH Domains  (1, 4)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 4)

Asymmetric Unit
(-)
Clan: NTF2 (66)
(-)
Family: NTF2 (30)
1aNTF2-1qmaD01D:10-121
1bNTF2-1qmaD02D:10-121
1cNTF2-1qmaD03D:10-121
1dNTF2-1qmaD04D:10-121

(-) Gene Ontology  (18, 39)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (NTF2_RAT | P61972)
molecular function
    GO:0008536    Ran GTPase binding    Interacting selectively and non-covalently with Ran, a conserved Ras-like GTP-binding protein, implicated in nucleocytoplasmic transport, cell cycle progression, spindle assembly, nuclear organization and nuclear envelope (NE) assembly.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
    GO:1904046    negative regulation of vascular endothelial growth factor production    Any process that stops, prevents or reduces the frequency, rate or extent of vascular endothelial growth factor production.
    GO:0042307    positive regulation of protein import into nucleus    Any process that activates or increases the frequency, rate or extent of movement of proteins from the cytoplasm into the nucleus.
    GO:0006611    protein export from nucleus    The directed movement of a protein from the nucleus into the cytoplasm.
    GO:0000060    protein import into nucleus, translocation    A protein transport process that contributes to protein import into the nucleus, and that results in the vectorial transfer of a cargo-carrier protein complex through the nuclear pore complex from the cytoplasmic side to the nucleoplasmic side of the nuclear envelope.
    GO:0015031    protein transport    The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0005622    intracellular    The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
    GO:0005640    nuclear outer membrane    The outer, i.e. cytoplasm-facing, lipid bilayer of the nuclear envelope; continuous with the endoplasmic reticulum of the cell and sometimes studded with ribosomes.
    GO:0044613    nuclear pore central transport channel    The central substructure of the nuclear pore complex (NPC), through which nucleocytoplasmic transport of RNAs, proteins and small molecules occurs. The central transport channel is filled with FG-nucleoporins, which form a selective barrier and provide a series of binding sites for transporter proteins. Characterized S. cerevisiae FG-nucleoporins include Nup159p, Nup145Np, Nup116p, Nup100p, Nsp1p, Nup57p, Nup49p, Nup42p, Nup53p, Nup59p/Asm4p, Nup60p and Nup1. Characterized vertebrate FG-nucleoporins include Nup214, Nup98, Nup62, Nup54, Nup58/45, NLP1, and Nup153.

Chain A,B,C,D   (NTF2_HUMAN | P61970)
molecular function
    GO:0008536    Ran GTPase binding    Interacting selectively and non-covalently with Ran, a conserved Ras-like GTP-binding protein, implicated in nucleocytoplasmic transport, cell cycle progression, spindle assembly, nuclear organization and nuclear envelope (NE) assembly.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0005215    transporter activity    Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells.
biological process
    GO:1904046    negative regulation of vascular endothelial growth factor production    Any process that stops, prevents or reduces the frequency, rate or extent of vascular endothelial growth factor production.
    GO:0042307    positive regulation of protein import into nucleus    Any process that activates or increases the frequency, rate or extent of movement of proteins from the cytoplasm into the nucleus.
    GO:0006611    protein export from nucleus    The directed movement of a protein from the nucleus into the cytoplasm.
    GO:0000060    protein import into nucleus, translocation    A protein transport process that contributes to protein import into the nucleus, and that results in the vectorial transfer of a cargo-carrier protein complex through the nuclear pore complex from the cytoplasmic side to the nucleoplasmic side of the nuclear envelope.
    GO:0015031    protein transport    The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0005622    intracellular    The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
    GO:0005640    nuclear outer membrane    The outer, i.e. cytoplasm-facing, lipid bilayer of the nuclear envelope; continuous with the endoplasmic reticulum of the cell and sometimes studded with ribosomes.
    GO:0005643    nuclear pore    Any of the numerous similar discrete openings in the nuclear envelope of a eukaryotic cell, where the inner and outer nuclear membranes are joined.
    GO:0044613    nuclear pore central transport channel    The central substructure of the nuclear pore complex (NPC), through which nucleocytoplasmic transport of RNAs, proteins and small molecules occurs. The central transport channel is filled with FG-nucleoporins, which form a selective barrier and provide a series of binding sites for transporter proteins. Characterized S. cerevisiae FG-nucleoporins include Nup159p, Nup145Np, Nup116p, Nup100p, Nsp1p, Nup57p, Nup49p, Nup42p, Nup53p, Nup59p/Asm4p, Nup60p and Nup1. Characterized vertebrate FG-nucleoporins include Nup214, Nup98, Nup62, Nup54, Nup58/45, NLP1, and Nup153.

Chain A,B,C,D   (NTF2_MOUSE | P61971)
molecular function
    GO:0008536    Ran GTPase binding    Interacting selectively and non-covalently with Ran, a conserved Ras-like GTP-binding protein, implicated in nucleocytoplasmic transport, cell cycle progression, spindle assembly, nuclear organization and nuclear envelope (NE) assembly.
    GO:0008565    protein transporter activity    Enables the directed movement of proteins into, out of or within a cell, or between cells.
biological process
    GO:0006611    protein export from nucleus    The directed movement of a protein from the nucleus into the cytoplasm.
    GO:0006606    protein import into nucleus    The directed movement of a protein from the cytoplasm to the nucleus.
    GO:0000060    protein import into nucleus, translocation    A protein transport process that contributes to protein import into the nucleus, and that results in the vectorial transfer of a cargo-carrier protein complex through the nuclear pore complex from the cytoplasmic side to the nucleoplasmic side of the nuclear envelope.
    GO:0015031    protein transport    The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0005622    intracellular    The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        NTF2_HUMAN | P619701gy5 1gy6
        NTF2_MOUSE | P619711gy5 1gy6
        NTF2_RAT | P619721a2k 1ar0 1ask 1gy5 1gy6 1jb2 1jb4 1jb5 1oun 1u5o 5bxq

(-) Related Entries Specified in the PDB File

1a2k GDPRAN-NTF2 COMPLEX
1ar0 NUCLEAR TRANSPORT FACTOR 2 (NTF2) E42K MUTANT
1ask NUCLEAR TRANSPORT FACTOR 2 (NTF2) H66A MUTANT
1oun THE 1.6 A RESOLUTION CRYSTAL STRUCTURE OF NUCLEAR TRANSPORT FACTOR 2 (NTF2)