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(-) Description

Title :  N77Y POINT MUTANT OF S.CEREVISIAE NTF2
 
Authors :  R. Bayliss, B. B. Quimby, A. Corbett, M. Stewart
Date :  21 Apr 02  (Deposition) - 20 Jun 02  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.60
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Nuclear Transport, Nuclear Transport Factor, Protein Transport (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. Bayliss, S. Leung, R. Baker, B. B. Quimby, A. Corbett, M. Stewart
Structural Basis For The Interaction Between Ntf2 And Nucleoporin Fxfg Repeats
Embo J. V. 21 2843 2002
PubMed-ID: 12065398  |  Reference-DOI: 10.1093/EMBOJ/CDF305

(-) Compounds

Molecule 1 - NUCLEAR TRANSPORT FACTOR 2
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Mutation: YES
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 4932
    Synonym: NTF-2, NUCLEAR TRANSPORT FACTOR P10

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1GY7)

(-) Sites  (0, 0)

(no "Site" information available for 1GY7)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1GY7)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1GY7)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1GY7)

(-) PROSITE Motifs  (1, 4)

Asymmetric Unit (1, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1NTF2_DOMAINPS50177 Nuclear transport factor 2 domain profile.NTF2_YEAST8-121
 
 
 		  4A:8-121
B:8-121
C:8-121
D:8-121
Biological Unit 1 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1NTF2_DOMAINPS50177 Nuclear transport factor 2 domain profile.NTF2_YEAST8-121
 
 
 		  2A:8-121
B:8-121
-
-
Biological Unit 2 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1NTF2_DOMAINPS50177 Nuclear transport factor 2 domain profile.NTF2_YEAST8-121
 
 
 		  2-
-
C:8-121
D:8-121

(-) Exons   (1, 4)

Asymmetric Unit (1, 4)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1YER009W1YER009W.1V:172114-172491378NTF2_YEAST1-1251254A:4-124
B:3-124
C:6-124
D:5-124		121
122
119
120

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:121
 aligned with NTF2_YEAST | P33331 from UniProtKB/Swiss-Prot  Length:125

    Alignment length:121
                                    13        23        33        43        53        63        73        83        93       103       113       123 
           NTF2_YEAST     4 DFNTLAQNFTQFYYNQFDTDRSQLGNLYRNESMLTFETSQLQGAKDIVEKLVSLPFQKVQHRITTLDAQPASPNGDVLVMITGDLLIDEEQNPQRFSQVFHLIPDGNSYYVFNDIFRLNYS 124
               SCOP domains d1gy7a_ A: Nuclear transport factor-2 (NTF2)                                                                              SCOP domains
               CATH domains 1gy7A00 A:4-124  [code=3.10.450.50, no name defined]                                                                      CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeeeee..eeeehhhhhhhhhhhh....eeeeeeeeeeee......eeeeeeeeeee......eeeeeeeeeeee..eeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----NTF2_DOMAIN  PDB: A:8-121 UniProt: 8-121                                                                          --- PROSITE
               Transcript 1 Exon 1.1  PDB: A:4-124 UniProt: 1-125 [INCOMPLETE]                                                                        Transcript 1
                 1gy7 A   4 DFNTLAQNFTQFYYNQFDTDRSQLGNLYRNESMLTFETSQLQGAKDIVEKLVSLPFQKVQHRITTLDAQPASPYGDVLVMITGDLLIDEEQNPQRFSQVFHLIPDGNSYYVFNDIFRLNYS 124
                                    13        23        33        43        53        63        73        83        93       103       113       123 


Chain B from PDB  Type:PROTEIN  Length:122
 aligned with NTF2_YEAST | P33331 from UniProtKB/Swiss-Prot  Length:125

    Alignment length:122
                                    12        22        32        42        52        62        72        82        92       102       112       122  
           NTF2_YEAST     3 LDFNTLAQNFTQFYYNQFDTDRSQLGNLYRNESMLTFETSQLQGAKDIVEKLVSLPFQKVQHRITTLDAQPASPNGDVLVMITGDLLIDEEQNPQRFSQVFHLIPDGNSYYVFNDIFRLNYS 124
               SCOP domains d1gy7b_ B: Nuclear transport factor-2 (NTF2)                                                                               SCOP domains
               CATH domains 1gy7B00 B:3-124  [code=3.10.450.50, no name defined]                                                                       CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeeeee..eeeehhhhhhhhhhhh....eeeeeeeeeeee......eeeeeeeeeee......eeeeeeeeeeee..eeeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----NTF2_DOMAIN  PDB: B:8-121 UniProt: 8-121                                                                          --- PROSITE
               Transcript 1 Exon 1.1  PDB: B:3-124 UniProt: 1-125 [INCOMPLETE]                                                                         Transcript 1
                 1gy7 B   3 LDFNTLAQNFTQFYYNQFDTDRSQLGNLYRNESMLTFETSQLQGAKDIVEKLVSLPFQKVQHRITTLDAQPASPYGDVLVMITGDLLIDEEQNPQRFSQVFHLIPDGNSYYVFNDIFRLNYS 124
                                    12        22        32        42        52        62        72        82        92       102       112       122  


Chain C from PDB  Type:PROTEIN  Length:119
 aligned with NTF2_YEAST | P33331 from UniProtKB/Swiss-Prot  Length:125

    Alignment length:119
                                    15        25        35        45        55        65        75        85        95       105       115         
           NTF2_YEAST     6 NTLAQNFTQFYYNQFDTDRSQLGNLYRNESMLTFETSQLQGAKDIVEKLVSLPFQKVQHRITTLDAQPASPNGDVLVMITGDLLIDEEQNPQRFSQVFHLIPDGNSYYVFNDIFRLNYS 124
               SCOP domains d1gy7c_ C: Nuclear transport factor-2 (NTF2)                                                                            SCOP domains
               CATH domains 1gy7C00 C:6-124  [code=3.10.450.50, no name defined]                                                                    CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhh.eeeeeeeee..eeeehhhhhhhhhhhh....eeeeeeeeeeee......eeeeeeeeeee......eeeeeeeeeeee..eeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --NTF2_DOMAIN  PDB: C:8-121 UniProt: 8-121                                                                          --- PROSITE
               Transcript 1 Exon 1.1  PDB: C:6-124 UniProt: 1-125 [INCOMPLETE]                                                                      Transcript 1
                 1gy7 C   6 NTLAQNFTQFYYNQFDTDRSQLGNLYRNESMLTFETSQLQGAKDIVEKLVSLPFQKVQHRITTLDAQPASPYGDVLVMITGDLLIDEEQNPQRFSQVFHLIPDGNSYYVFNDIFRLNYS 124
                                    15        25        35        45        55        65        75        85        95       105       115         


Chain D from PDB  Type:PROTEIN  Length:120
 aligned with NTF2_YEAST | P33331 from UniProtKB/Swiss-Prot  Length:125

    Alignment length:120
                                    14        24        34        44        54        64        74        84        94       104       114       124
           NTF2_YEAST     5 FNTLAQNFTQFYYNQFDTDRSQLGNLYRNESMLTFETSQLQGAKDIVEKLVSLPFQKVQHRITTLDAQPASPNGDVLVMITGDLLIDEEQNPQRFSQVFHLIPDGNSYYVFNDIFRLNYS 124
               SCOP domains d1gy7d_ D: Nuclear transport factor-2 (NTF2)                                                                             SCOP domains
               CATH domains 1gy7D00 D:5-124  [code=3.10.450.50, no name defined]                                                                     CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhh.eeeeeeeee..eeeehhhhhhhhhhhh....eeeeeeeeeeee......eeeeeeeeeee......eeeeeeeeeeee..eeeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ---NTF2_DOMAIN  PDB: D:8-121 UniProt: 8-121                                                                          --- PROSITE
               Transcript 1 Exon 1.1  PDB: D:5-124 UniProt: 1-125 [INCOMPLETE]                                                                       Transcript 1
                 1gy7 D   5 FNTLAQNFTQFYYNQFDTDRSQLGNLYRNESMLTFETSQLQGAKDIVEKLVSLPFQKVQHRITTLDAQPASPYGDVLVMITGDLLIDEEQNPQRFSQVFHLIPDGNSYYVFNDIFRLNYS 124
                                    14        24        34        44        54        64        74        84        94       104       114       124
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (1, 4)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1GY7)

(-) Gene Ontology  (8, 8)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (NTF2_YEAST | P33331)
molecular function
    GO:0008536    Ran GTPase binding    Interacting selectively and non-covalently with Ran, a conserved Ras-like GTP-binding protein, implicated in nucleocytoplasmic transport, cell cycle progression, spindle assembly, nuclear organization and nuclear envelope (NE) assembly.
biological process
    GO:0006913    nucleocytoplasmic transport    The directed movement of molecules between the nucleus and the cytoplasm.
    GO:0006606    protein import into nucleus    The directed movement of a protein from the cytoplasm to the nucleus.
    GO:0015031    protein transport    The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005622    intracellular    The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
    GO:0005635    nuclear envelope    The double lipid bilayer enclosing the nucleus and separating its contents from the rest of the cytoplasm; includes the intermembrane space, a gap of width 20-40 nm (also called the perinuclear space).

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  1gy7
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        NTF2_YEAST | P33331: 1gyb

(-) Related Entries Specified in the PDB File

1gy5 D92N,D94N DOUBLE POINT MUTANT OF HUMAN NUCLEAR TRANSPORT FACTOR 2 (NTF2)
1gy6 NTF2 FROM RAT, AMMONIUM SULPHATE CONDITIONS
1gyb N77Y POINT MUTANT OF YNTF2 BOUND TO FXFG NUCLEOPORIN REPEAT