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1FLO
Asym. Unit
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Asym.Unit (328 KB)
Biol.Unit 1 (321 KB)
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(1)
Title
:
FLP RECOMBINASE-HOLLIDAY JUNCTION COMPLEX I
Authors
:
Y. Chen, U. Narendra, L. E. Iype, M. M. Cox, P. A. Rice
Date
:
14 Aug 00 (Deposition) - 04 Sep 00 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.65
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L (1x)
Keywords
:
Tyrosine Recombinase, Protein-Dna Complex, Holliday- Junction, Domain-Swapping, Ligase, Lyase/Dna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Chen, U. Narendra, L. E. Iype, M. M. Cox, P. A. Rice
Crystal Structure Of A Flp Recombinase-Holliday Junction Complex: Assembly Of An Active Oligomer By Helix Swapping.
Mol. Cell V. 6 885 2000
(for further references see the
PDB file header
)
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Hetero Components
(1, 4)
Info
All Hetero Components
1a: PHOSPHONIC ACID (PHSa)
1b: PHOSPHONIC ACID (PHSb)
1c: PHOSPHONIC ACID (PHSc)
1d: PHOSPHONIC ACID (PHSd)
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Label:
No.
Name
Count
Type
Full Name
1
PHS
4
Ligand/Ion
PHOSPHONIC ACID
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Sites
(9, 9)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: CTA (AUTHOR)
6: CTB (AUTHOR)
7: CTC (AUTHOR)
8: CTD (AUTHOR)
9: PHO (AUTHOR)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG A:191 , LYS A:223 , HIS A:305 , ARG A:308 , TYR D:343 , DC E:-5 , DT J:-3
BINDING SITE FOR RESIDUE PHS E -4
2
AC2
SOFTWARE
ARG B:191 , LYS B:223 , HIS B:305 , ARG B:308 , TYR C:343 , DC G:-5 , DT L:-3
BINDING SITE FOR RESIDUE PHS G -4
3
AC3
SOFTWARE
ARG C:191 , HIS C:305 , DT H:-3 , DC I:-5
BINDING SITE FOR RESIDUE PHS I -4
4
AC4
SOFTWARE
ARG D:191 , HIS D:305 , DT F:-3 , DC K:-5
BINDING SITE FOR RESIDUE PHS K -4
5
CTA
AUTHOR
ARG A:191 , LYS A:223 , HIS A:305 , ARG A:308 , TRP A:330 , TYR D:343
ACTIVE CATALYTIC SITE OF MONOMER A. Y343 IS DONATED BY MONOMER D.
6
CTB
AUTHOR
ARG B:191 , LYS B:223 , HIS B:305 , ARG B:308 , TRP B:330 , TYR C:343
ACTIVE CATALYTIC SITE OF MONOMER B. Y343 IS DONATED BY MONOMER C.
7
CTC
AUTHOR
ARG C:191 , LYS C:223 , HIS C:305 , ARG C:308 , TRP C:330 , TYR A:343
INACTIVE CATALYTIC SITE OF MONOMER C. Y343 IS DONATED BY MONOMER A.
8
CTD
AUTHOR
ARG D:191 , LYS D:223 , HIS D:305 , ARG D:308 , TRP D:330
INACTIVE CATALYTIC SITE OF MONOMER D. Y343 IS DONATED BY MONOMER B, IS DISORDERED.
9
PHO
AUTHOR
PHS E:-4 , PHS G:-4 , PHS K:-4 , PHS I:-4
SCISSLE PHOSPHATES
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d1floa1 (A:2-129)
1b: SCOP_d1flob1 (B:2-129)
1c: SCOP_d1floc1 (C:2-129)
1d: SCOP_d1flod1 (D:2-129)
2a: SCOP_d1floa2 (A:135-423)
2b: SCOP_d1flob2 (B:135-423)
2c: SCOP_d1floc2 (C:137-423)
2d: SCOP_d1flod2 (D:138-423)
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)
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)
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)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
SAM domain-like
(639)
Superfamily
:
lambda integrase-like, N-terminal domain
(25)
Family
:
lambda integrase-like, N-terminal domain
(24)
Protein domain
:
Flp recombinase
(3)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(3)
1a
d1floa1
A:2-129
1b
d1flob1
B:2-129
1c
d1floc1
C:2-129
1d
d1flod1
D:2-129
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
DNA breaking-rejoining enzymes
(47)
Superfamily
:
DNA breaking-rejoining enzymes
(47)
Family
:
Lambda integrase-like, catalytic core
(31)
Protein domain
:
Flp recombinase
(3)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(3)
2a
d1floa2
A:135-423
2b
d1flob2
B:135-423
2c
d1floc2
C:137-423
2d
d1flod2
D:138-423
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CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_1floA01 (A:3-107)
1b: CATH_1floB01 (B:3-107)
1c: CATH_1floC01 (C:3-107)
1d: CATH_1floD01 (D:3-107)
2a: CATH_1floC02 (C:152-419)
2b: CATH_1floB02 (B:152-419)
2c: CATH_1floD02 (D:152-419)
2d: CATH_1floA02 (A:152-422)
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)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
GMP Synthetase; Chain A, domain 3
(192)
Homologous Superfamily
:
FLP Recombinase, lambda integrase-like, N-terminal domain (domain 1)
(3)
[unclassified]
(3)
1a
1floA01
A:3-107
1b
1floB01
B:3-107
1c
1floC01
C:3-107
1d
1floD01
D:3-107
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
hpI Integrase; Chain A
(31)
Homologous Superfamily
:
Intergrase catalytic core
(31)
[unclassified]
(26)
2a
1floC02
C:152-419
2b
1floB02
B:152-419
2c
1floD02
D:152-419
2d
1floA02
A:152-422
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Pfam Domains
(0, 0)
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Chain H
Chain I
Chain J
Chain K
Chain L
Asymmetric Unit 1
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Asym.Unit (328 KB)
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Header - Biol.Unit 1
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