1EW7 - JenaLib

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Theoretical Model (Jmol Viewer)

Title :   MODEL OF TROPONIN-I IN COMPLEX WITH TROPONIN-C

Authors :   C. S. Tung, M. E. Wall, S. C. Gallagher, J. Trewhella

Date :   24 Apr 00 (Deposition) - 13 Sep 00 (Release) - 02 Oct 02 (Revision)

Method :   THEORETICAL MODEL

Resolution :   NOT APPLICABLE

Chains :   Theor. Model : C,I  (2x)

Keywords :   Beta-Hairpin, Protein-Protein Complex, Supercoiled Alpha Helix (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   C. S. Tung, M. E. Wall, S. C. Gallagher, J. Trewhella
A Model Of Troponin-I In Complex With Troponin-C Using Hybrid Experimental Data: The Inhibitory Region Is A Beta-Hairpin.
Protein Sci. V. 9 1312 2000
PubMed: search
(for further references see the PDB file header)

Molecule 1 - TROPONIN-I
	Chains	:	I
	Organism Common	:	RABBIT
	Organism Scientific	:	ORYCTOLAGUS CUNICULUS
	Synonym	:	TNI
	Tissue	:	FAST SKELETAL MUSCLE

Molecule 2 - TROPONIN-C
	Chains	:	C
	Mutation	:	YES
	Organism Common	:	CHICKEN
	Organism Scientific	:	GALLUS GALLUS
	Rabbit Tnc(-1	:	159)]
	Synonym	:	TNC
	Tissue	:	FAST SKELETAL MUSCLE


Theoretical Model (2x)	:

Summary Information (see also Sequences/Alignments below)

(no "Ligand,Modified Residues,Ions" information available for 1EW7)

(no "Site" information available for 1EW7)

(no "SS Bond" information available for 1EW7)

Theoretical Model

No.	Residues
1	Cys I:48	-	Pro I:49

(no "SAP(SNP)/Variant" information available for 1EW7)

Theoretical Model (2, 8)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	EF_HAND_2	PS50222	EF-hand calcium-binding domain profile.	TNNC2_CHICK	18-53 54-89 94-129 130-163	4	C:214-249 C:250-285 C:290-325 C:326-358
2	EF_HAND_1	PS00018	EF-hand calcium-binding domain.	TNNC2_CHICK	31-43 67-79 107-119 143-155	4	C:227-239 C:263-275 C:303-315 C:339-351

Theoretical Model (4, 4)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.1	ENSGALT00000011060	1	ENSGALE00000073521	Un_random:20732110-20732258	149	TNNC2_CHICK	1-50	50	1	C:199-246	48
1.2	ENSGALT00000011060	2	ENSGALE00000073519	Un_random:20732332-20732446	115	TNNC2_CHICK	50-88	39	1	C:246-284	39
1.3	ENSGALT00000011060	3	ENSGALE00000073522	Un_random:20732522-20732658	137	TNNC2_CHICK	88-134	47	1	C:284-330	47
1.4	ENSGALT00000011060	4	ENSGALE00000073520	Un_random:20732749-20732979	231	TNNC2_CHICK	134-143	10	1	C:330-339	10

Theoretical Model

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain C from PDB  Type:PROTEIN  Length:161
 aligned with TNNC2_CHICK | P02588 from UniProtKB/Swiss-Prot  Length:163

    Alignment length:161
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162 
          TNNC2_CHICK     3 SMTDQQAEARAFLSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDFEEFLVMMVRQMKEDAKGKSEEELANCFRIFDKNADGFIDIEELGEILRATGEHVTEEDIEDLMKDSDKNNDGRIDFDEFLKMMEGVQ 163
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhh.hhhhhhhhhhhhhhhh.......hhhhhhhhhhhhh....hhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhh.....hhhhhhhhhhhhh.......hhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ---------------EF_HAND_2  PDB: C:214-249           EF_HAND_2  PDB: C:250-285           ----EF_HAND_2  PDB: C:290-325           EF_HAND_2  PDB: C:326-358          PROSITE (1)
                PROSITE (2) ----------------------------EF_HAND_1    -----------------------EF_HAND_1    ---------------------------EF_HAND_1    -----------------------EF_HAND_1    -------- PROSITE (2)
           Transcript 1 (1) Exon 1.1  PDB: C:199-246 UniProt: 1-50          -------------------------------------Exon 1.3  PDB: C:284-330 UniProt: 88-134       ----------------------------- Transcript 1 (1)
           Transcript 1 (2) -----------------------------------------------Exon 1.2  PDB: C:246-284 UniProt: 50-88---------------------------------------------Exon 1.4  -------------------- Transcript 1 (2)
                 1ew7 C 199 SMTDQQAEARAFLSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDADGSGTIDFEEFLVMMVRQMKEDAKGKSEEELEDCFRIFDKNADGFIDIEELGEILRATGEHVTEEDIEDLMKDSDKNNDGRIDFDEFLKMMEGVG 359
                                   208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358

Chain I from PDB  Type:PROTEIN  Length:134
 aligned with TNNI2_RABIT | P02643 from UniProtKB/Swiss-Prot  Length:182

    Alignment length:134
                                    13        23        33        43        53        63        73        83        93       103       113       123       133    
          TNNI2_RABIT     4 EEKRNRAITARRQHLKSVMLQIAATELEKEEGRREAEKQNYLAEHCPPLSLPGSMAEVQELCKQLHAKIDAAEEEKYDMEIKVQKSSKELEDMNQKLFDLRGKFKRPPLRRVRMSADAMLKALLGSKHKVCMDL 137
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..............................hhhhhhhhhhhhhhhhhhhh..............eee..........eee...hhhhhhhh............. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ew7 I   3 EEKRNRAITARRQHLKSVMLQIAATELEKEEGRREAEKQNYLAEHCPPLSLPGSMAEVQELCKQLHAKIDAAEEEKYDMEIKVQKSSKELEDMNQKLFDLRGKFKRPPLRRVRMSADAMLKALLGSKHKVCMDL 136
                                    12        22        32        42        52        62        72        82        92       102       112       122       132

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 1EW7)

(no "CATH Domain" information available for 1EW7)

(no "Pfam Domain" information available for 1EW7)

Theoretical Model(hide GO term definitions)

Chain C (TNNC2_CHICK | P02588)

molecular function
	GO:0003779	actin binding	Interacting selectively and non-covalently with monomeric or multimeric forms of actin, including actin filaments.
	GO:0005509	calcium ion binding	Interacting selectively and non-covalently with calcium ions (Ca2+).
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
biological process
	GO:0003009	skeletal muscle contraction	A process in which force is generated within skeletal muscle tissue, resulting in a change in muscle geometry. Force generation involves a chemo-mechanical energy conversion step that is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis. In the skeletal muscle, the muscle contraction takes advantage of an ordered sarcomeric structure and in most cases it is under voluntary control.
cellular component
	GO:0005861	troponin complex	A complex of accessory proteins (typically troponin T, troponin I and troponin C) found associated with actin in muscle thin filaments; involved in calcium regulation of muscle contraction.

Chain I (TNNI2_RABIT | P02643)

molecular function
	GO:0003779	actin binding	Interacting selectively and non-covalently with monomeric or multimeric forms of actin, including actin filaments.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0031014	troponin T binding	Interacting selectively and non-covalently with troponin T, the tropomyosin-binding subunit of the troponin complex.
cellular component
	GO:0005861	troponin complex	A complex of accessory proteins (typically troponin T, troponin I and troponin C) found associated with actin in muscle thin filaments; involved in calcium regulation of muscle contraction.

Theoretical Model
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	Ligands, Modified Residues, Ions
(no "Ligands, Modified Residues, Ions" information available for 1ew7)

	Sites
(no "Sites" information available for 1ew7)

	Cis Peptide Bonds
		Cys I:48 - Pro I:49	[ RasMol ]

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1a2x	RABBIT FAST SKELETAL MUSCLE TNC/TNI(1-47)
1mxl	CARDIAC N-TNC/TNI(147-163)
1tcf	RABBIT FAST SKELETAL MUSCLE 4CA2+/TNC
1tn4	RABBIT FAST SKELETAL MUSCLE 4CA2+/TNC
2tn4	RABBIT SKELETAL MUSCLE 4CA2+/TNC
4tnc	CHICKEN FAST SKELETAL MUSCLE 2CA2+/TNC
5tnc	AVIAN FAST SKELETAL MUSCLE 2CA2+/TNC

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (0, 0)

Sites (0, 0)

SS Bonds (0, 0)

Cis Peptide Bonds (1, 1)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (2, 8)

Exons (4, 4)

Sequences/Alignments

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (6, 9)

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