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(-) Description

Title :  G61V FLAVODOXIN MUTANT FROM DESULFOVIBRIO VULGARIS
 
Authors :  M. A. Walsh, A. Mccarthy, P. A. O'Farrell, G. Voordouw, T. Higgins, S. G. Mayhew
Date :  18 Nov 97  (Deposition) - 20 May 98  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym./Biol. Unit :  A
Keywords :  Electron Transport, Electron Transfer, Flavoprotein, Fmn, Flavodoxin, Mutant (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  P. A. O'Farrell, M. A. Walsh, A. A. Mccarthy, T. M. Higgins, G. Voordouw, S. G. Mayhew
Modulation Of The Redox Potentials Of Fmn In Desulfovibrio Vulgaris Flavodoxin: Thermodynamic Properties And Crystal Structures Of Glycine-61 Mutants.
Biochemistry V. 37 8405 1998
PubMed-ID: 9622492  |  Reference-DOI: 10.1021/BI973193K
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - FLAVODOXIN
    ChainsA
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPDK6
    Expression System StrainTG2
    Expression System Taxid562
    Expression System Vector TypePLASMID
    MutationYES
    OrganSEED
    Organism ScientificDESULFOVIBRIO VULGARIS SUBSP. VULGARIS STR. HILDENBOROUGH
    Organism Taxid882
    StrainHILDENBOROUGH

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1FMN1Ligand/IonFLAVIN MONONUCLEOTIDE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:10 , THR A:11 , THR A:12 , GLY A:13 , ASN A:14 , THR A:15 , GLY A:44 , SER A:58 , THR A:59 , TRP A:60 , VAL A:61 , CYS A:93 , GLY A:94 , ASP A:95 , TYR A:98 , TYR A:100 , PHE A:101 , CYS A:102 , HOH A:153 , HOH A:172 , HOH A:185BINDING SITE FOR RESIDUE FMN A 149

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1AZL)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1AZL)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1AZL)

(-) PROSITE Motifs  (2, 2)

Asymmetric/Biological Unit (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1FLAVODOXIN_LIKEPS50902 Flavodoxin-like domain profile.FLAV_DESVH4-145  1A:4-145
2FLAVODOXINPS00201 Flavodoxin signature.FLAV_DESVH6-22  1A:6-22

(-) Exons   (0, 0)

(no "Exon" information available for 1AZL)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:147
 aligned with FLAV_DESVH | P00323 from UniProtKB/Swiss-Prot  Length:148

    Alignment length:147
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       
           FLAV_DESVH     2 PKALIVYGSTTGNTEYTAETIARELADAGYEVDSRDAASVEAGGLFEGFDLVLLGCSTWGDDSIELQDDFIPLFDSLEETGAQGRKVACFGCGDSSYEYFCGAVDAIEEKLKNLGAEIVQDGLRIDGDPRAARDDIVGWAHDVRGAI 148
               SCOP domains d1azla_ A: Flavodoxin                                                                                                                               SCOP domains
               CATH domains 1azlA00 A:2-148  [code=3.40.50.360, no name defined]                                                                                                CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author eeeeeeeee..hhhhhhhhhhhhhhhh..eeeeeeee............eeeeeeeeee.........hhhhhhhhhhhh...eeeeeeeeeee.......hhhhhhhhhhhhh....eeeeeeeeee..hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) --FLAVODOXIN_LIKE  PDB: A:4-145 UniProt: 4-145                                                                                                  --- PROSITE (1)
                PROSITE (2) ----FLAVODOXIN       ------------------------------------------------------------------------------------------------------------------------------ PROSITE (2)
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1azl A   2 PKALIVYGSTTGNTEYTAETIARELADAGYEVDSRDAASVEAGGLFEGFDLVLLGCSTWVDDSIELQDDFIPLFDSLEETGAQGRKVACFGCGDSSYEYFCGAVDAIEEKLKNLGAEIVQDGLRIDGDPRAARDDIVGWAHDVRGAI 148
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       

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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit

(-) CATH Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1AZL)

(-) Gene Ontology  (3, 3)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (FLAV_DESVH | P00323)
molecular function
    GO:0010181    FMN binding    Interacting selectively and non-covalently with flavin mono nucleotide. Flavin mono nucleotide (FMN) is the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes.
    GO:0009055    electron carrier activity    Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
biological process
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FLAV_DESVH | P003231akq 1akr 1akt 1aku 1akv 1akw 1bu5 1c7e 1c7f 1f4p 1fx1 1i1o 1j8q 1j9e 1j9g 1wsb 1wsw 1xt6 1xyv 1xyy 2fx2 3fx2 4fx2 5fx2 5tgz 5v56 5v57 5xr8 5xra

(-) Related Entries Specified in the PDB File

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