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(-) Description

Title :  THE STRUCTURE OF AN ANTITUMOR CH2-DOMAIN-DELETED HUMANIZED ANTIBODY
 
Authors :  S. B. Larson, J. S. Day, S. Glaser, G. Braslawsky, A. Mcpherson
Date :  05 Apr 05  (Deposition) - 10 May 05  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.80
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A,B,C,D  (1x)
Biol. Unit 2:  E,F,G,H  (1x)
Biol. Unit 3:  A,B,C,D,E,F,G,H  (2x)
Biol. Unit 4:  A,B,C,D,E,F,G,H  (1x)
Keywords :  Immunoglobulin Fold, Ch2-Domain-Deletion, Immune System (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. B. Larson, J. S. Day, S. Glaser, G. Braslawsky, A. Mcpherson
The Structure Of An Antitumor C(H)2-Domain-Deleted Humanized Antibody.
J. Mol. Biol. V. 348 1177 2005
PubMed-ID: 15854653  |  Reference-DOI: 10.1016/J.JMB.2005.03.036
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - IGG LIGHT CHAIN
    Chains: A, C, E, G
    Engineered: YES
    Expression System: CRICETULUS GRISEUS
    Expression System Common: CHINESE HAMSTER
    Expression System Taxid: 10029
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
 
Molecule 2 - IGG HEAVY CHAIN
    Chains: B, D, F, H
    Engineered: YES
    Expression System: CRICETULUS GRISEUS
    Expression System Common: CHINESE HAMSTER
    Expression System Taxid: 10029
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : ABCDEFGH
Biological Unit 1 (1x): ABCD    
Biological Unit 2 (1x):     EFGH
Biological Unit 3 (2x): ABCDEFGH
Biological Unit 4 (1x): ABCDEFGH

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1ZA6)

(-) Sites  (0, 0)

(no "Site" information available for 1ZA6)

(-) SS Bonds  (24, 24)

Asymmetric Unit
No.Residues
1A:23 -A:94
2A:140 -A:200
3A:220 -B:218
4B:22 -B:96
5B:142 -B:198
6B:264 -B:322
7C:23 -C:94
8C:140 -C:200
9C:220 -D:218
10D:22 -D:96
11D:142 -D:198
12D:264 -D:322
13E:23 -E:94
14E:140 -E:200
15E:220 -F:218
16F:22 -F:96
17F:142 -F:198
18F:264 -F:322
19G:23 -G:94
20G:140 -G:200
21G:220 -H:218
22H:22 -H:96
23H:142 -H:198
24H:264 -H:322

(-) Cis Peptide Bonds  (21, 21)

Asymmetric Unit
No.Residues
1Ser A:7 -Pro A:8
2Tyr A:100 -Pro A:101
3Tyr A:146 -Pro A:147
4Phe B:148 -Pro B:149
5Glu B:150 -Pro B:151
6Tyr B:270 -Pro B:271
7Ser C:7 -Pro C:8
8Tyr C:100 -Pro C:101
9Phe D:148 -Pro D:149
10Glu D:150 -Pro D:151
11Tyr D:270 -Pro D:271
12Ser E:7 -Pro E:8
13Tyr E:100 -Pro E:101
14Phe F:148 -Pro F:149
15Glu F:150 -Pro F:151
16Tyr F:270 -Pro F:271
17Ser G:7 -Pro G:8
18Tyr G:100 -Pro G:101
19Tyr G:146 -Pro G:147
20Phe H:148 -Pro H:149
21Glu H:150 -Pro H:151

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1ZA6)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1ZA6)

(-) Exons   (0, 0)

(no "Exon" information available for 1ZA6)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:220
                                                                                                                                                                                                                                                            
               SCOP domains d1za6a1 A:1-113 automated matches                                                                                d1za6a2 A:114-220 automated matches                                                                         SCOP domains
               CATH domains 1za6A01 A:1-113 Immunoglobulins                                                                                  1za6A02 A:114-217 Immunoglobulins                                                                       --- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..eeeee....eeeeeee.............eeeeee......eeeee...ee.......eeeeee..eeeeee...hhhhh.eeeeee......ee...eeeeee.......eeee..hhhhhhhheeeeeeeeeee........eee........eeeee.........eeeeeeeeeehhhhhhh.eeeeee........eeeeee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1za6 A   1 DIVMSQSPDSLAVSLGERVTLNCKSSQSLLYSGNQKNYLAWYQQKPGQSPKLLIYWASARESGVPDRFSGSGSGTDFTLTISSVQAEDVAVYYCQQYYSYPLTFGAGTKLELKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC 220
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220


Chain B from PDB  Type:PROTEIN  Length:324
 aligned with Q6GMX6_HUMAN | Q6GMX6 from UniProtKB/TrEMBL  Length:465

    Alignment length:448
                                                                                   76 77                                                                                                                                                                                                                                                                                                                                                                                                    
                                    29        39        49        59        69      | 77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457        
         Q6GMX6_HUMAN    20 QVQLQESGPGLVKPSETLSLTCTVSGGSISGYYWSWIRQPAGKGLEWIGRIYTSGST--NYNPSLKSRVTMSVDTSKNQFSLKLSSVTAADTAVYYCARGRFTYFDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHTCPPCPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALHNHYTQKSLSLSPGK 465
               SCOP domains -d1za6b1 B:2-115 Immunoglobulin heavy chain varia ble domain, VH                                                      d1za6b2 B:116-218 Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma                        -------------------------------------------------------------------------------------------------------------------------d1za6b3 B:239-344 Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma                            SCOP domains
               CATH domains 1za6B01 B:1-115 Immunoglobulins                                                                                       1za6B02 B:116-218 Immunoglobulins                                                                      -------------------------------------------------------------------------------------------------------------------------1za6B03 B:239-344 Immunoglobulins                                                                          CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee...eee.....eeeeeeee........eeeeee.....eeeee-eee....eeee.......eeeeee....eeeeee...hhhhheeeeeee.--....ee...eeeee........eeeee..........eeeeeeeeeee......eee........eee...ee.....eeeeeeeeee.hhhhhh.eeeeeeehhhheeeeeee.....-------------------------------------------------------------------------------------------------------------------------.....eeeee..hhhhhhh..eeeeeeeeee.....eeeee........eee...ee.....eeeeeeeeehhhhhhh..eeeeeee.......eeeeeee..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1za6 B   1 QVQLVQSGAEVVKPGASVKISCKASGYTFTDHAIHWVKQNPGQRLEWIG-YFSPGNDDFKYNERFKGKATLTADTSASTAYVELSSLRSEDTAVYFCTRS--LNMAYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC-------------------------------------------------------------------------------------------------------------------------QPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALHNHYTQKSLSLSPGK 344
                                    10        20        30        40        |-|       59        69        79        89        99  |    107       117       127       137       147       157       167       177       187       197       207       217|        -         -         -         -         -         -         -         -         -         -         -         -  |    246       256       266       276       286       296       306       316       326       336        
                                                                           49 |                                               99  |                                                                                                                   218                                                                                                                       239                                                                                                         
                                                                             50                                                 100                                                                                                                                                                                                                                                                                                                                                         


Chain C from PDB  Type:PROTEIN  Length:220
                                                                                                                                                                                                                                                            
               SCOP domains d1za6c1 C:1-113 automated matches                                                                                d1za6c2 C:114-220 automated matches                                                                         SCOP domains
               CATH domains 1za6C01 C:1-113 Immunoglobulins                                                                                  1za6C02 C:114-217 Immunoglobulins                                                                       --- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..eeeee....eeeeeee.............eeeeee......eeeee...ee.......eeeeee..eeeeee...hhhhheeeeeee......ee...eeeeee......eeeee..hhhhhhh.eeeeeeeeeee......eeeee..ee....eeeee.........eeeeeeeeeehhhhhh..eeeeee........eeeeee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1za6 C   1 DIVMSQSPDSLAVSLGERVTLNCKSSQSLLYSGNQKNYLAWYQQKPGQSPKLLIYWASARESGVPDRFSGSGSGTDFTLTISSVQAEDVAVYYCQQYYSYPLTFGAGTKLELKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC 220
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220


Chain D from PDB  Type:PROTEIN  Length:324
 aligned with Q6GMX6_HUMAN | Q6GMX6 from UniProtKB/TrEMBL  Length:465

    Alignment length:448
                                                                                   76 77                                                                                                                                                                                                                                                                                                                                                                                                    
                                    29        39        49        59        69      | 77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457        
         Q6GMX6_HUMAN    20 QVQLQESGPGLVKPSETLSLTCTVSGGSISGYYWSWIRQPAGKGLEWIGRIYTSGST--NYNPSLKSRVTMSVDTSKNQFSLKLSSVTAADTAVYYCARGRFTYFDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHTCPPCPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALHNHYTQKSLSLSPGK 465
               SCOP domains -d1za6d1 D:2-115 Immunoglobulin heavy chain varia ble domain, VH                                                      d1za6d2 D:116-218 Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma                        -------------------------------------------------------------------------------------------------------------------------d1za6d3 D:239-344 Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma                            SCOP domains
               CATH domains 1za6D01 D:1-115 Immunoglobulins                                                                                       1za6D02 D:116-218 Immunoglobulins                                                                      -------------------------------------------------------------------------------------------------------------------------1za6D03 D:239-344 Immunoglobulins                                                                          CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee...eee.....eeeeeeee..hhhhh.eeeeee.....eeeee-ee......eee.......eeeeee....eeeeee...hhhhheeeeeee.--.........eeeee........eeeee..........eeeeeeeeeee.....eeee.hhh....eee...ee.....eeeeeeeeee..........eeeeehhhheee.........-------------------------------------------------------------------------------------------------------------------------.....eeeee....hhhhh..eeeeeeeeee.....eeeee..............ee.....eeeeeeeeehhhhhh...eeeeeee.......eeeeeee..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1za6 D   1 QVQLVQSGAEVVKPGASVKISCKASGYTFTDHAIHWVKQNPGQRLEWIG-YFSPGNDDFKYNERFKGKATLTADTSASTAYVELSSLRSEDTAVYFCTRS--LNMAYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC-------------------------------------------------------------------------------------------------------------------------QPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALHNHYTQKSLSLSPGK 344
                                    10        20        30        40        |-|       59        69        79        89        99  |    107       117       127       137       147       157       167       177       187       197       207       217|        -         -         -         -         -         -         -         -         -         -         -         -  |    246       256       266       276       286       296       306       316       326       336        
                                                                           49 |                                               99  |                                                                                                                   218                                                                                                                       239                                                                                                         
                                                                             50                                                 100                                                                                                                                                                                                                                                                                                                                                         


Chain E from PDB  Type:PROTEIN  Length:220
                                                                                                                                                                                                                                                            
               SCOP domains d1za6e1 E:1-113 automated matches                                                                                d1za6e2 E:114-220 automated matches                                                                         SCOP domains
               CATH domains 1za6E01 E:1-113 Immunoglobulins                                                                                  1za6E02 E:114-217 Immunoglobulins                                                                       --- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..eeeee....eeeeeee....ee....ee.eeeeee......eeeee...ee.......eeeeee..eeeeee.........eeeeee......ee...eeeeee.......eeee..hhhhhhhheeeeeeeeeee.....eeeeee..eee...eeeee.........eeeeeeeeeehhhhhh..eeeeeee.......eeeeee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1za6 E   1 DIVMSQSPDSLAVSLGERVTLNCKSSQSLLYSGNQKNYLAWYQQKPGQSPKLLIYWASARESGVPDRFSGSGSGTDFTLTISSVQAEDVAVYYCQQYYSYPLTFGAGTKLELKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC 220
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220


Chain F from PDB  Type:PROTEIN  Length:324
 aligned with Q6GMX6_HUMAN | Q6GMX6 from UniProtKB/TrEMBL  Length:465

    Alignment length:448
                                                                                   76 77                                                                                                                                                                                                                                                                                                                                                                                                    
                                    29        39        49        59        69      | 77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457        
         Q6GMX6_HUMAN    20 QVQLQESGPGLVKPSETLSLTCTVSGGSISGYYWSWIRQPAGKGLEWIGRIYTSGST--NYNPSLKSRVTMSVDTSKNQFSLKLSSVTAADTAVYYCARGRFTYFDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHTCPPCPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALHNHYTQKSLSLSPGK 465
               SCOP domains -d1za6f1 F:2-115 Immunoglobulin heavy chain varia ble domain, VH                                                      d1za6f2 F:116-218 Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma                        -------------------------------------------------------------------------------------------------------------------------d1za6f3 F:239-344 Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma                            SCOP domains
               CATH domains 1za6F01 F:1-115 Immunoglobulins                                                                                       1za6F02 F:116-218 Immunoglobulins                                                                      -------------------------------------------------------------------------------------------------------------------------1za6F03 F:239-344 Immunoglobulins                                                                          CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee...eee.....eeeeeeee........eeeeee.....eeeee-eee....eeee.hhhh....eeee....eeeeee........eeeeeee.--....ee...eeeee........eeeee..........eeeeeeeeeee.....eeee.hhh.....ee...ee.....eeeeeeeeee........eeeeeeehhhheee..ee.....-------------------------------------------------------------------------------------------------------------------------.....eeeee..hhhhhhh..eeeeeeeeee.....eeeee........eee...ee.....eeeeeeeeehhhhhhh...eeeeee.......eeeeee...... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1za6 F   1 QVQLVQSGAEVVKPGASVKISCKASGYTFTDHAIHWVKQNPGQRLEWIG-YFSPGNDDFKYNERFKGKATLTADTSASTAYVELSSLRSEDTAVYFCTRS--LNMAYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC-------------------------------------------------------------------------------------------------------------------------QPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALHNHYTQKSLSLSPGK 344
                                    10        20        30        40        |-|       59        69        79        89        99  |    107       117       127       137       147       157       167       177       187       197       207       217|        -         -         -         -         -         -         -         -         -         -         -         -  |    246       256       266       276       286       296       306       316       326       336        
                                                                           49 |                                               99  |                                                                                                                   218                                                                                                                       239                                                                                                         
                                                                             50                                                 100                                                                                                                                                                                                                                                                                                                                                         


Chain G from PDB  Type:PROTEIN  Length:220
                                                                                                                                                                                                                                                            
               SCOP domains d1za6g1 G:1-113 automated matches                                                                                d1za6g2 G:114-220 automated matches                                                                         SCOP domains
               CATH domains 1za6G01 G:1-113 Immunoglobulins                                                                                  1za6G02 G:114-217 Immunoglobulins                                                                       --- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..eeeee....eeeeeee.............eeeeee......eeeee...ee.......eeeeee..eeeeee...hhhhheeeeeee......ee...eeeeee......eeeee..hhhhhhhheeeeeeeeeee.....eeeeee..eee...eeeee.........eeeeeeeeeehhhhhhh.eeeeeee.......eeeeee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1za6 G   1 DIVMSQSPDSLAVSLGERVTLNCKSSQSLLYSGNQKNYLAWYQQKPGQSPKLLIYWASARESGVPDRFSGSGSGTDFTLTISSVQAEDVAVYYCQQYYSYPLTFGAGTKLELKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC 220
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220


Chain H from PDB  Type:PROTEIN  Length:324
 aligned with Q6GMX6_HUMAN | Q6GMX6 from UniProtKB/TrEMBL  Length:465

    Alignment length:448
                                                                                   76 77                                                                                                                                                                                                                                                                                                                                                                                                    
                                    29        39        49        59        69      | 77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457        
         Q6GMX6_HUMAN    20 QVQLQESGPGLVKPSETLSLTCTVSGGSISGYYWSWIRQPAGKGLEWIGRIYTSGST--NYNPSLKSRVTMSVDTSKNQFSLKLSSVTAADTAVYYCARGRFTYFDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHTCPPCPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALHNHYTQKSLSLSPGK 465
               SCOP domains -d1za6h1 H:2-115 Immunoglobulin heavy chain varia ble domain, VH                                                      d1za6h2 H:116-218 Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma                        -------------------------------------------------------------------------------------------------------------------------d1za6h3 H:239-344 Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma                            SCOP domains
               CATH domains 1za6H01 H:1-115 Immunoglobulins                                                                                       1za6H02 H:116-218 Immunoglobulins                                                                      -------------------------------------------------------------------------------------------------------------------------1za6H03 H:239-344 Immunoglobulins                                                                          CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee...eee.....eeeeeeee..hhhhh.eeeeee.....eeeee-eee....eeee.hhhh..eeeeee....eeeeee...hhhhheeeeeee.--....ee...eeeee........eeeee..........eeeeeeeeeee.....eeee.hhh.....ee...ee.....eeeeeeeeee........eeeeeeehhhheee..ee.....-------------------------------------------------------------------------------------------------------------------------.....eeeee..hhhhh....eeeeeeeeee.......eee........eee...ee.....eeeeeeeeehhhhhhh...eeeeee.......eeeeee...... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1za6 H   1 QVQLVQSGAEVVKPGASVKISCKASGYTFTDHAIHWVKQNPGQRLEWIG-YFSPGNDDFKYNERFKGKATLTADTSASTAYVELSSLRSEDTAVYFCTRS--LNMAYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC-------------------------------------------------------------------------------------------------------------------------QPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALHNHYTQKSLSLSPGK 344
                                    10        20        30        40        |-|       59        69        79        89        99  |    107       117       127       137       147       157       167       177       187       197       207       217|        -         -         -         -         -         -         -         -         -         -         -         -  |    246       256       266       276       286       296       306       316       326       336        
                                                                           49 |                                               99  |                                                                                                                   218                                                                                                                       239                                                                                                         
                                                                             50                                                 100
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (5, 20)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (1, 20)

Asymmetric Unit
(-)
Class: Mainly Beta (13760)
(-)
Architecture: Sandwich (5577)
(-)
Topology: Immunoglobulin-like (3897)
(-)
Homologous Superfamily: Immunoglobulins (2282)
(-)
Human (Homo sapiens) (912)
1a1za6A02A:114-217
1b1za6B02B:116-218
1c1za6D02D:116-218
1d1za6F02F:116-218
1e1za6H02H:116-218
1f1za6B03B:239-344
1g1za6D03D:239-344
1h1za6F03F:239-344
1i1za6H03H:239-344
1j1za6A01A:1-113
1k1za6C01C:1-113
1l1za6E01E:1-113
1m1za6G01G:1-113
1n1za6C02C:114-217
1o1za6E02E:114-217
1p1za6G02G:114-217
1q1za6B01B:1-115
1r1za6D01D:1-115
1s1za6F01F:1-115
1t1za6H01H:1-115

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1ZA6)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 1ZA6)

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  Cis Peptide Bonds
    Glu B:150 - Pro B:151   [ RasMol ]  
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  1za6
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q6GMX6_HUMAN | Q6GMX6: 1bey 2jix 3b2u 3b2v 3d0l 3zl4 4d9l 4fqq 4lkx 4npy 4qhk 4qhl 4qhm 4qhn

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 1ZA6)