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1ZA6
Biol. Unit 4
Info
Asym.Unit (347 KB)
Biol.Unit 1 (174 KB)
Biol.Unit 2 (173 KB)
Biol.Unit 3 (673 KB)
Biol.Unit 4 (340 KB)
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(1)
Title
:
THE STRUCTURE OF AN ANTITUMOR CH2-DOMAIN-DELETED HUMANIZED ANTIBODY
Authors
:
S. B. Larson, J. S. Day, S. Glaser, G. Braslawsky, A. Mcpherson
Date
:
05 Apr 05 (Deposition) - 10 May 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: E,F,G,H (1x)
Biol. Unit 3: A,B,C,D,E,F,G,H (2x)
Biol. Unit 4: A,B,C,D,E,F,G,H (1x)
Keywords
:
Immunoglobulin Fold, Ch2-Domain-Deletion, Immune System
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. B. Larson, J. S. Day, S. Glaser, G. Braslawsky, A. Mcpherson
The Structure Of An Antitumor C(H)2-Domain-Deleted Humanized Antibody.
J. Mol. Biol. V. 348 1177 2005
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
(0, 0)
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SAPs(SNPs)/Variants
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(5, 20)
Info
All SCOP Domains
1a: SCOP_d1za6a1 (A:1-113)
1b: SCOP_d1za6c1 (C:1-113)
1c: SCOP_d1za6e1 (E:1-113)
1d: SCOP_d1za6g1 (G:1-113)
2a: SCOP_d1za6a2 (A:114-220)
2b: SCOP_d1za6c2 (C:114-220)
2c: SCOP_d1za6e2 (E:114-220)
2d: SCOP_d1za6g2 (G:114-220)
3a: SCOP_d1za6b2 (B:116-218)
3b: SCOP_d1za6d2 (D:116-218)
3c: SCOP_d1za6f2 (F:116-218)
3d: SCOP_d1za6h2 (H:116-218)
4a: SCOP_d1za6b3 (B:239-344)
4b: SCOP_d1za6d3 (D:239-344)
4c: SCOP_d1za6f3 (F:239-344)
4d: SCOP_d1za6h3 (H:239-344)
5a: SCOP_d1za6b1 (B:2-115)
5b: SCOP_d1za6d1 (D:2-115)
5c: SCOP_d1za6f1 (F:2-115)
5d: SCOP_d1za6h1 (H:2-115)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
automated matches
(864)
Protein domain
:
automated matches
(864)
Human (Homo sapiens) [TaxId: 9606]
(448)
1a
d1za6a1
A:1-113
1b
d1za6c1
C:1-113
1c
d1za6e1
E:1-113
1d
d1za6g1
G:1-113
Family
:
C1 set domains (antibody constant domain-like)
(3013)
Protein domain
:
automated matches
(652)
Human (Homo sapiens) [TaxId: 9606]
(334)
2a
d1za6a2
A:114-220
2b
d1za6c2
C:114-220
2c
d1za6e2
E:114-220
2d
d1za6g2
G:114-220
Protein domain
:
Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
(608)
Human (Homo sapiens) [TaxId: 9606]
(179)
3a
d1za6b2
B:116-218
3b
d1za6d2
D:116-218
3c
d1za6f2
F:116-218
3d
d1za6h2
H:116-218
Protein domain
:
Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
(38)
Human (Homo sapiens) [TaxId: 9606]
(31)
4a
d1za6b3
B:239-344
4b
d1za6d3
D:239-344
4c
d1za6f3
F:239-344
4d
d1za6h3
H:239-344
Family
:
V set domains (antibody variable domain-like)
(1919)
Protein domain
:
Immunoglobulin heavy chain variable domain, VH
(658)
Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
(177)
5a
d1za6b1
B:2-115
5b
d1za6d1
D:2-115
5c
d1za6f1
F:2-115
5d
d1za6h1
H:2-115
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CATH Domains
(1, 20)
Info
all CATH domains
1a: CATH_1za6A02 (A:114-217)
1b: CATH_1za6B02 (B:116-218)
1c: CATH_1za6D02 (D:116-218)
1d: CATH_1za6F02 (F:116-218)
1e: CATH_1za6H02 (H:116-218)
1f: CATH_1za6B03 (B:239-344)
1g: CATH_1za6D03 (D:239-344)
1h: CATH_1za6F03 (F:239-344)
1i: CATH_1za6H03 (H:239-344)
1j: CATH_1za6A01 (A:1-113)
1k: CATH_1za6C01 (C:1-113)
1l: CATH_1za6E01 (E:1-113)
1m: CATH_1za6G01 (G:1-113)
1n: CATH_1za6C02 (C:114-217)
1o: CATH_1za6E02 (E:114-217)
1p: CATH_1za6G02 (G:114-217)
1q: CATH_1za6B01 (B:1-115)
1r: CATH_1za6D01 (D:1-115)
1s: CATH_1za6F01 (F:1-115)
1t: CATH_1za6H01 (H:1-115)
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Homologous Superfamilies
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)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
Human (Homo sapiens)
(912)
1a
1za6A02
A:114-217
1b
1za6B02
B:116-218
1c
1za6D02
D:116-218
1d
1za6F02
F:116-218
1e
1za6H02
H:116-218
1f
1za6B03
B:239-344
1g
1za6D03
D:239-344
1h
1za6F03
F:239-344
1i
1za6H03
H:239-344
1j
1za6A01
A:1-113
1k
1za6C01
C:1-113
1l
1za6E01
E:1-113
1m
1za6G01
G:1-113
1n
1za6C02
C:114-217
1o
1za6E02
E:114-217
1p
1za6G02
G:114-217
1q
1za6B01
B:1-115
1r
1za6D01
D:1-115
1s
1za6F01
F:1-115
1t
1za6H01
H:1-115
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (347 KB)
Header - Asym.Unit
Biol.Unit 1 (174 KB)
Header - Biol.Unit 1
Biol.Unit 2 (173 KB)
Header - Biol.Unit 2
Biol.Unit 3 (673 KB)
Header - Biol.Unit 3
Biol.Unit 4 (340 KB)
Header - Biol.Unit 4
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