Chain A from PDB Type:PROTEIN Length:230
aligned with RPOA_THEAQ | Q9KWU8 from UniProtKB/Swiss-Prot Length:314
Alignment length:230
15 25 35 45 55 65 75 85 95 105 115 125 135 145 155 165 175 185 195 205 215 225 235
RPOA_THEAQ 6 LKAPVFTATTQGDHYGEFVLEPLERGFGVTLGNPLRRILLSSIPGTAVTSVYIEDVLHEFSTIPGVKEDVVEIILNLKELVVRFLDPKMASTTLILRAEGPKEVRAGDFTPSADVEIMNPDLHIATLEEGGKLYMEVRVDRGVGYVPAERHGIKDRINAIPVDAIFSPVRRVAFQVEDTRLGQRTDLDKLTLRIWTDGSVTPLEALNQAVAILKEHLNYFANPEASLLPT 235
SCOP domains d1ynja1 A:6-49,A:173-231 d1ynja2 A:50-172 RNA polymerase alpha subunit d1ynja1 A:6-49,A:173-231 RNA polymerase alpha ---- SCOP domains
CATH domains 1ynjA01 A:6-49,A:172-225 1ynjA02 A:50-171 RNA Polymerase Alpha Subunit; Chain A, domain 2 1ynjA01 A:6-49,A:172-225 ---------- CATH domains
Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .....eeeee.....eeeeeeee..hhhhhhhhhhhhhhhhhh.eeeeeeeee...............hhhhhhhhhhhh.ee..........eee......ee...........ee.......ee........eeeeeeee..eehhhhhh...........ee...eee..eeee..........eeeee..ee....hhhhhhhhhhhhhhhhhh............ Sec.struct. author
SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1ynj A 6 LKAPVFTATTQGDHYGEFVLEPLERGFGVTLGNPLRRILLSSIPGTAVTSVYIEDVLHEFSTIPGVKEDVVEIILNLKELVVRFLDPKMASTTLILRAEGPKEVRAGDFTPSADVEIMNPDLHIATLEEGGKLYMEVRVDRGVGYVPAERHGIKDRINAIPVDAIFSPVRRVAFQVEDTRLGQRTDLDKLTLRIWTDGSVTPLEALNQAVAILKEHLNYFANPEASLLPT 235
15 25 35 45 55 65 75 85 95 105 115 125 135 145 155 165 175 185 195 205 215 225 235
Chain B from PDB Type:PROTEIN Length:225
aligned with RPOA_THEAQ | Q9KWU8 from UniProtKB/Swiss-Prot Length:314
Alignment length:225
13 23 33 43 53 63 73 83 93 103 113 123 133 143 153 163 173 183 193 203 213 223
RPOA_THEAQ 4 SKLKAPVFTATTQGDHYGEFVLEPLERGFGVTLGNPLRRILLSSIPGTAVTSVYIEDVLHEFSTIPGVKEDVVEIILNLKELVVRFLDPKMASTTLILRAEGPKEVRAGDFTPSADVEIMNPDLHIATLEEGGKLYMEVRVDRGVGYVPAERHGIKDRINAIPVDAIFSPVRRVAFQVEDTRLGQRTDLDKLTLRIWTDGSVTPLEALNQAVAILKEHLNYFANP 228
SCOP domains --d1ynjb1 B:6-49,B:173-228 d1ynjb2 B:50-172 RNA polymerase alpha subunit d1ynjb1 B:6-49,B:173-228 RNA polymerase alpha SCOP domains
CATH domains 1ynjB01 B:4-49,B:172-225 1ynjB02 B:50-171 RNA Polymerase Alpha Subunit; Chain A, domain 2 1ynjB01 B:4-49,B:172-225 --- CATH domains
Pfam domains (1) ---------------------RNA_pol_L-1ynjB01 B:25-223 ----- Pfam domains (1)
Pfam domains (2) ---------------------RNA_pol_L-1ynjB02 B:25-223 ----- Pfam domains (2)
Pfam domains (3) ------------------------------------------------RNA_pol_A_bac-1ynjB03 B:52-179 ------------------------------------------------- Pfam domains (3)
Pfam domains (4) ------------------------------------------------RNA_pol_A_bac-1ynjB04 B:52-179 ------------------------------------------------- Pfam domains (4)
Sec.struct. author .......eeeee.....eeeeeeee..hhhhhhhhhhhhhhhhh..eeeeeeeee...............hhhhhhhhhhh..eee......eeeeeee.......hhhhh.....eee................eeeeeeeee....hhhhhh.......ee.......eeeeeeeeeeeee..eeeeeeeeeeeee....hhhhhhhhhhhhhhhhhh..... Sec.struct. author
SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1ynj B 4 SKLKAPVFTATTQGDHYGEFVLEPLERGFGVTLGNPLRRILLSSIPGTAVTSVYIEDVLHEFSTIPGVKEDVVEIILNLKELVVRFLDPKMASTTLILRAEGPKEVRAGDFTPSADVEIMNPDLHIATLEEGGKLYMEVRVDRGVGYVPAERHGIKDRINAIPVDAIFSPVRRVAFQVEDTRLGQRTDLDKLTLRIWTDGSVTPLEALNQAVAILKEHLNYFANP 228
13 23 33 43 53 63 73 83 93 103 113 123 133 143 153 163 173 183 193 203 213 223
Chain C from PDB Type:PROTEIN Length:1114
aligned with RPOB_THEAQ | Q9KWU7 from UniProtKB/Swiss-Prot Length:1119
Alignment length:1114
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 1110
RPOB_THEAQ 1 MEIKRFGRIREVIPLPPLTEIQVESYKKALQADVPPEKRENVGIQAAFKETFPIEEGDKGKGGLVLDFLEYRIGDPPFSQDECREKDLTYQAPLYARLQLIHKDTGLIKEDEVFLGHLPLMTEDGSFIINGADRVIVSQIHRSPGVYFTPDPARPGRYIASIIPLPKRGPWIDLEVEASGVVTMKVNKRKFPLVLLLRVLGYDQETLVRELSAYGDLVQGLLDEAVLAMRPEEAMVRLFTLLRPGDPPKKDKALAYLFGLLADPKRYDLGEAGRYKAEEKLGVGLSGRTLVRFEDGEFKDEVFLPTLRYLFALTAGVPGHEVDDIDHLGNRRIRTVGELMADQFRVGLARLARGVRERMVMGSPDTLTPAKLVNSRPLEAALREFFSRSQLSQFKDETNPLSSLRHKRRISALGPGGLTRERAGFDVRDVHRTHYGRICPVETPEGANIGLITSLAAYARVDALGFIRTPYRRVKNGVVTEEVVYMTASEEDRYTIAQANTPLEGDRIATDRVVARRRGEPVIVAPEEVEFMDVSPKQVFSLNTNLIPFLEHDDANRALMGSNMQTQAVPLIRAQAPVVMTGLEERVVRDSLAALYAEEDGEVVKVDGTRIAVRYEDGRLVEHPLRRYARSNQGTAFDQRPRVRVGQRVKKGDLLADGPASEEGFLALGQNVLVAIMPFDGYNFEDAIVISEELLKRDFYTSIHIERYEIEARDTKLGPERITRDIPHLSEAALRDLDEEGIVRIGAEVKPGDILVGRTSFKGEQEPSPEERLLRSIFGEKARDVKDTSLRVPPGEGGIVVGRLRLRRGDPGVELKPGVREVVRVFVAQKRKLQVGDKLANRHGNKGVVAKILPVEDMPHLPDGTPVDVILNPLGVPSRMNLGQILETHLGLAGYFLGQRYISPVFDGATEPEIKELLAEAFNLYFGKRQGEGFGVDKREKEVLARAEKLGLVSPGKSPEEQLKELFDLGKVVLYDGRTGEPFEGPIVVGQMFIMKLYHMVEDKMHARSTGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAYGAAHTLQEMLTIKSDDIEGRNAAYQAIIKGEDVPEPSVPESFRVLVKELQALALDVQTLDEKDNPVDIFEG 1114
SCOP domains d1ynjc1 C:1-1114 RNA-polymerase beta SCOP domains
CATH domains 1ynjC01 1ynjC02 C:9-143,C:325-469,C:536-592 [code=3.90.1100.10, no name defined] 1ynjC03 C:144-324 [code=3.90.1110.10, no name defined] 1ynjC02 C:9-143,C:325-469,C:536-592 [code=3.90.1100.10, no name defined] 1ynjC04 C:470-535 [code=2.30.150.10, no name defined] 1ynjC02 C:9-143,C:325-469,C:536-592 1ynjC05 C:593-667 [code=2.40.50.100, no name defined] 1ynjC01 C:1-8,C:668-702,C:831-1004 1ynjC06 C:703-830 [code=2.40.50.150, no name defined] 1ynjC01 C:1-8,C:668-702,C:831-1004 [code=2.40.270.10, no name defined] -------------------------------------------------------------------------------------------------------------- CATH domains
Pfam domains (1) ----------------RNA_pol_Rpb2_1-1ynjC02 C:17-389 ---RNA_pol_Rpb2_3-1ynjC04 C:393-462 --------RNA_pol_Rpb2_45-1ynjC05 C:471-535 -----RNA_pol_Rpb2_6-1ynjC01 C:541-1026 -RNA_pol_Rpb2_7-1ynjC06 C:1028-1104 ---------- Pfam domains (1)
Pfam domains (2) ---------------------------------------------------------------------------------------------------------------------------------------------RNA_pol_Rpb2_2-1ynjC03 C:142-334 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains (2)
Sec.struct. author .eeee.............hhhhhhhhhh.............hhhhhhhhh................eeeeeee.....hhhhhhhhh.....eeeeeee..............eeee.................ee.eeeee..ee............eeeee........eeee........eee..eeehhhhhhhhh..hhhhhhhhhh....hhhhhhh......hhhhhhhhhhhhhh.......hhhhhh................hhhhhhhhh....................hhhhhhhhhhh..................eeeehhhhhhhhhhhhhhhhhhhhhhhhhhhh.............hhhhhhhhhhhhhh..ee.....hhhhhhhhhheee........................................eee.....ee.....ee..eeeee..eeeeee............ee...............eeeee..eeeeehhhhh.eee.hhhhhh..hhhhh.hhhhhhhhhhhhhhh...............ee.hhhhhhhhhh...ee.....eeeee...eeeee......eeee...............ee............eeee...ee..ee..eeeeeeee...........eeeehhhhhh.....eeeeeeeeeee...................hhhhh..........ee....................hhhhhhhhh...................eeeeeeeee............eeeeeeeeeeee.......eee......eeeeeee...............eeehhhhh.....hhhhhhhhhhhhhhhhheeee.......hhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhh.......hhhhhhhhhhhh.ee..............eeeeeeeeee.........ee......................ee.hhhhhhhhhhh.hhhhhhhhhh....hhhhhhhhhhhhh..........hhhhhhhhhhhhh.....eee............ Sec.struct. author
SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RNA_POL_BETA -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1ynj C 1 MEIKRFGRIREVIPLPPLTEIQVESYKKALQADVPPEKRENVGIQAAFKETFPIEEGDKGKGGLVLDFLEYRIGDPPFSQDECREKDLTYQAPLYARLQLIHKDTGLIKEDEVFLGHLPLMTEDGSFIINGADRVIVSQIHRSPGVYFTPDPARPGRYIASIIPLPKRGPWIDLEVEASGVVTMKVNKRKFPLVLLLRVLGYDQETLVRELSAYGDLVQGLLDEAVLAMRPEEAMVRLFTLLRPGDPPKKDKALAYLFGLLADPKRYDLGEAGRYKAEEKLGVGLSGRTLVRFEDGEFKDEVFLPTLRYLFALTAGVPGHEVDDIDHLGNRRIRTVGELMADQFRVGLARLARGVRERMVMGSPDTLTPAKLVNSRPLEAALREFFSRSQLSQFKDETNPLSSLRHKRRISALGPGGLTRERAGFDVRDVHRTHYGRICPVETPEGANIGLITSLAAYARVDALGFIRTPYRRVKNGVVTEEVVYMTASEEDRYTIAQANTPLEGDRIATDRVVARRRGEPVIVAPEEVEFMDVSPKQVFSLNTNLIPFLEHDDANRALMGSNMQTQAVPLIRAQAPVVMTGLEERVVRDSLAALYAEEDGEVVKVDGTRIAVRYEDGRLVEHPLRRYARSNQGTAFDQRPRVRVGQRVKKGDLLADGPASEEGFLALGQNVLVAIMPFDGYNFEDAIVISEELLKRDFYTSIHIERYEIEARDTKLGPERITRDIPHLSEAALRDLDEEGIVRIGAEVKPGDILVGRTSFKGEQEPSPEERLLRSIFGEKARDVKDTSLRVPPGEGGIVVGRLRLRRGDPGVELKPGVREVVRVFVAQKRKLQVGDKLANRHGNKGVVAKILPVEDMPHLPDGTPVDVILNPLGVPSRMNLGQILETHLGLAGYFLGQRYISPVFDGATEPEIKELLAEAFNLYFGKRQGEGFGVDKREKEVLARAEKLGLVSPGKSPEEQLKELFDLGKVVLYDGRTGEPFEGPIVVGQMFIMKLYHMVEDKMHARSTGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAYGAAHTLQEMLTIKSDDIEGRNAAYQAIIKGEDVPEPSVPESFRVLVKELQALALDVQTLDEKDNPVDIFEG 1114
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 1110
Chain D from PDB Type:PROTEIN Length:1238
aligned with RPOC_THEAQ | Q9KWU6 from UniProtKB/Swiss-Prot Length:1524
Alignment length:1238
12 22 32 42 52 62 72 82 92 102 112 122 132 142 152 162 172 182 192 202 212 222 232 242 252 262 272 282 292 302 312 322 332 342 352 362 372 382 392 402 412 422 432 442 452 462 472 482 492 502 512 522 532 542 552 562 572 582 592 602 612 622 632 642 652 662 672 682 692 702 712 722 732 742 752 762 772 782 792 802 812 822 832 842 852 862 872 882 892 902 912 922 932 942 952 962 972 982 992 1002 1012 1022 1032 1042 1052 1062 1072 1082 1092 1102 1112 1122 1132 1142 1152 1162 1172 1182 1192 1202 1212 1222 1232
RPOC_THEAQ 3 KEVRKVRIALASPEKIRSWSYGEVEKPETINYRTLKPERDGLFDERIFGPIKDYECACGKYKRQRFEGKVCERCGVEVTRSIVRRYRMGHIELATPAAHIWFVKDVPSKIGTLLDLSATELEQVLYFNKYIVLDPKGAVLDGVPVEKRQLLTDEEYRELRYGKQETYPLPAGVDALVKDGEEVVKGQELAPGVVSRMDGVALYRFPRRVRVDYLRKERAALRIPLSAWVEKEAYRPGEVLAELSEPYLFRAEESGVVELKDLAEGHLIYLRQEEEVVARYFLPAGMTPLVVEGEIVEVGQPLAEGKGLLRLPRHMTAKEVEAEEEGDSVHLTLFLEWTEPKDYKVAPHMNVIVPEGAKVQAGEKIVAAIDPEEEVIAEAEGVVHLHEPASILVVKARVYPFEDDVEVTTGDRVAPGDVLADGGKVKSEIYGRVEVDLVRNVVRVVESYDIDARMGAEAIQELLKELDLEKLERELLEEMKHPSRARRAKARKRLEVVRAFLDSGNRPEWMILEAVPVLPPDLRPMVQVDGGRFATSDLNDLYRRLINRNNRLKKLLAQGAPEIIIRNEKRMLQEAVDAVIDNGRRGSPVTNPGSERPLRSLTDILSGKQGRFRQNLLGKRVDYSGRSVIVVGPQLKLHQCGLPKRMALELFKPFLLKKMEEKAFAPNVKAARRMLERQRDIKDEVWDALEEVIHGKVVLLNRAPTLHRLGIQAFQPVLVEGQSIQLHPLVCEAFNADFDGDQMAVHVPLSSFAQAEARIQMLSAHNLLSPASGEPLAKPSRDIILGLYYITQVRKEKKGAGMAFATPEEALAAYERGEVALNAPIVVAGRETSVGRLKFVFANPDEALLAVAHGLLDLQDVVTVRYLGRRLETSPGRILFARIVGEAVGDEKVAQELIQMDVPQEKNSLKDLVYQAFLRLGMEKTARLLDALKYYGFTLSTTSGITIGIDDAVIPEEKQRYLEEADRKLRQIEQAYEMGFLTDRERYDQVIQLWTETTEKVTQAVFKNFEENYPFNPLYVMAQSGARGNPQQIRQLCGMRGLMQKPSGETFEVPVRSSFREGLTVLEYFISSHGARKGGADTALRTADSGYLTRKLVDVAHEIVVREADCGTTNYISVPLFQMDEVTRTLRLRKRSDIESGLYGRVLAREVEALGRRLEEGRYLSLEDVHFLIKAAEAGEVREVPVRSPLTCQTRYGVCQKCYGYDLSMARPVSIGEAVGVVAAESIGEPGTQLTMRT 1240
SCOP domains d1ynjd1 D:3-1240 RNA-polymerase beta-prime SCOP domains
CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
Pfam domains (1) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RNA_pol_Rpb1_1-1ynjD01 D:417-618 -RNA_pol_Rpb1_2-1ynjD03 D:620-765 --RNA_pol_Rpb1_3-1ynjD04 D:768-954 ----------------------------RNA_pol_Rpb1_4-1ynjD05 D:983-1066 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains (1)
Pfam domains (2) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RNA_pol_Rpb1_1-1ynjD02 D:417-618 ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains (2)
Sec.struct. author ....eee....hhhhhhhhh...........................................................hhhhhhh..eeee.......hhhhhh................hhhhh....ee.................ee.hhhhhhhhh..eeeee.............ee...............eeeee..eee..eeeeeeeeeeeeee.hhh..........eeee....eeee....eeeeeeee..eeeeeeee..eeeeeeee.eeeee......ee....eeeeeeeeee.....eeeeeeeeee..eeeeeeeeeeeeee........ee.....eee...ee.ee........ee...eee..eee.eeeee..eeee...........ee....eee....ee....eeeeee....eeeeee........hhhhhhhhhhh.hhhhhhhhhhhh..........hhhhhhhhhhhhhh...........eeee.hhhhh..eee...eee..hhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhh..............................hhhhhh.ee..eee..eee...........hhhhhhhhhhhhhhhhhhhh....hhhhhhhh.......hhhhhhhhhhhhh...eeee.....hhh.eeee.........eeehhhhhhhhh........eee...hhhhhhhhhhhhhhhhh...............hhhhhhhhhh..................hhhhhhhhhhh............hhhhhhhee.hhhhhhhhhhh.........eeee..eee..hhhhhhhhhhhhhh..hhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhh....hhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhh....hhhhhhhhhh.........................hhhhhhhh.hhhhhhhhhhhhhh...hhhhhhhhhhhh..............eeee.eee......eee.hhhhhhhhhh..ee...eee..eee......hhhhhhhhhhhhhh....eeeee..............................hhhhhhhhhhhhhhh...... Sec.struct. author
SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1ynj D 3 KEVRKVRIALASPEKIRSWSYGEVEKPETINYRTLKPERDGLFDERIFGPIKDYECACGKYKRQRFEGKVCERCGVEVTRSIVRRYRMGHIELATPAAHIWFVKDVPSKIGTLLDLSATELEQVLYFNKYIVLDPKGAVLDGVPVEKRQLLTDEEYRELRYGKQETYPLPAGVDALVKDGEEVVKGQELAPGVVSRMDGVALYRFPRRVRVDYLRKERAALRIPLSAWVEKEAYRPGEVLAELSEPYLFRAEESGVVELKDLAEGHLIYLRQEEEVVARYFLPAGMTPLVVEGEIVEVGQPLAEGKGLLRLPRHMTAKEVEAEEEGDSVHLTLFLEWTEPKDYKVAPHMNVIVPEGAKVQAGEKIVAAIDPEEEVIAEAEGVVHLHEPASILVVKARVYPFEDDVEVTTGDRVAPGDVLADGGKVKSEIYGRVEVDLVRNVVRVVESYDIDARMGAEAIQELLKELDLEKLERELLEEMKHPSRARRAKARKRLEVVRAFLDSGNRPEWMILEAVPVLPPDLRPMVQVDGGRFATSDLNDLYRRLINRNNRLKKLLAQGAPEIIIRNEKRMLQEAVDAVIDNGRRGSPVTNPGSERPLRSLTDILSGKQGRFRQNLLGKRVDYSGRSVIVVGPQLKLHQCGLPKRMALELFKPFLLKKMEEKAFAPNVKAARRMLERQRDIKDEVWDALEEVIHGKVVLLNRAPTLHRLGIQAFQPVLVEGQSIQLHPLVCEAFNADFDGDQMAVHVPLSSFAQAEARIQMLSAHNLLSPASGEPLAKPSRDIILGLYYITQVRKEKKGAGMAFATPEEALAAYERGEVALNAPIVVAGRETSVGRLKFVFANPDEALLAVAHGLLDLQDVVTVRYLGRRLETSPGRILFARIVGEAVGDEKVAQELIQMDVPQEKNSLKDLVYQAFLRLGMEKTARLLDALKYYGFTLSTTSGITIGIDDAVIPEEKQRYLEEADRKLRQIEQAYEMGFLTDRERYDQVIQLWTETTEKVTQAVFKNFEENYPFNPLYVMAQSGARGNPQQIRQLCGMRGLMQKPSGETFEVPVRSSFREGLTVLEYFISSHGARKGGADTALRTADSGYLTRKLVDVAHEIVVREADCGTTNYISVPLFQMDEVTRTLRLRKRSDIESGLYGRVLAREVEALGRRLEEGRYLSLEDVHFLIKAAEAGEVREVPVRSPLTCQTRYGVCQKCYGYDLSMARPVSIGEAVGVVAAESIGEPGTQLTMRT 1240
12 22 32 42 52 62 72 82 92 102 112 122 132 142 152 162 172 182 192 202 212 222 232 242 252 262 272 282 292 302 312 322 332 342 352 362 372 382 392 402 412 422 432 442 452 462 472 482 492 502 512 522 532 542 552 562 572 582 592 602 612 622 632 642 652 662 672 682 692 702 712 722 732 742 752 762 772 782 792 802 812 822 832 842 852 862 872 882 892 902 912 922 932 942 952 962 972 982 992 1002 1012 1022 1032 1042 1052 1062 1072 1082 1092 1102 1112 1122 1132 1142 1152 1162 1172 1182 1192 1202 1212 1222 1232
Chain J from PDB Type:PROTEIN Length:249
aligned with RPOC_THEAQ | Q9KWU6 from UniProtKB/Swiss-Prot Length:1524
Alignment length:249
1262 1272 1282 1292 1302 1312 1322 1332 1342 1352 1362 1372 1382 1392 1402 1412 1422 1432 1442 1452 1462 1472 1482 1492
RPOC_THEAQ 1253 TQGLPRVIELFEARRPKAKAVISEIDGVVRIEEGEDRLSVFVESEGFSKEYKLPKDARLLVKDGDYVEAGQPLTRGAIDPHQLLEAKGPEAVERYLVDEIQKVYRAQGVKLHDKHIEIVVRQMLKYVEVTDPGDSRLLEGQVLEKWDVEALNERLIAEGKVPVAWKPLLMGVTKSALSTKSWLSAASFQNTTHVLTEAAIAGKKDELIGLKENVILGRLIPAGTGSDFVRFTQVVDQRTLKAIEEARKE 1501
SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
Pfam domains (1) RNA_pol_Rpb1_5-1ynjJ01 J:1253-1437 ---------------------------------------------------------------- Pfam domains (1)
Pfam domains (2) RNA_pol_Rpb1_5-1ynjJ02 J:1253-1437 ---------------------------------------------------------------- Pfam domains (2)
Sec.struct. author .hhhhhhhhhhh..............eeeeee......eeeee....eeeee.............ee...........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhh..eeeee.........eeehhhhhhhhh............eeee...hhhhhhhh..hhhhhhh..hhhhhhhhhhhh.......hhhhhhhhh....hhhhh......eeeehhhhhhhhh.... Sec.struct. author
SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1ynj J 1253 TQGLPRVIELFEARRPKAKAVISEIDGVVRIEEGEDRLSVFVESEGFSKEYKLPKDARLLVKDGDYVEAGQPLTRGAIDPHQLLEAKGPEAVERYLVDEIQKVYRAQGVKLHDKHIEIVVRQMLKYVEVTDPGDSRLLEGQVLEKWDVEALNERLIAEGKVPVAWKPLLMGVTKSALSTKSWLSAASFQNTTHVLTEAAIAGKKDELIGLKENVILGRLIPAGTGSDFVRFTQVVDQRTLKAIEEARKE 1501
1262 1272 1282 1292 1302 1312 1322 1332 1342 1352 1362 1372 1382 1392 1402 1412 1422 1432 1442 1452 1462 1472 1482 1492
Chain K from PDB Type:PROTEIN Length:95
aligned with RPOZ_THEAQ | Q9EVV4 from UniProtKB/Swiss-Prot Length:99
Alignment length:95
10 20 30 40 50 60 70 80 90
RPOZ_THEAQ 1 MAEPGIDKLFGMVDSKYRLTVVVAKRAQQLLRHRFKNTVLEPEERPKMRTLEGLYDDPNAVTWAMKELLTGRLFFGENLVPEDRLQKEMERLYPT 95
SCOP domains d1ynjk1 K:1-95 RNA polymerase omega subunit SCOP domains
CATH domains 1ynjK00 K:1-95 [code=3.90.940.10, no name defined] CATH domains
Pfam domains ------RNA_pol_Rpb6-1ynjK01 K:7-52 ------------------------------------------- Pfam domains
Sec.struct. author ....hhhhhhhh...hhhhhhhhhhhhhhhhhh.............ee......ee..hhhhhhhhhhh...eeee....hhhhhh......... Sec.struct. author
SAPs(SNPs) ----------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ----------------------------------------------------------------------------------------------- PROSITE
Transcript ----------------------------------------------------------------------------------------------- Transcript
1ynj K 1 MAEPGIDKLFGMVDSKYRLTVVVAKRAQQLLRHRFKNTVLEPEERPKMRTLEGLYDDPNAVTWAMKELLTGRLFFGENLVPEDRLQKEMERLYPT 95
10 20 30 40 50 60 70 80 90
Legend: |
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→ Mismatch |
(orange background) |
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- |
→ Gap |
(green background, '-', border residues have a numbering label) |
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→ Modified Residue |
(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name) |
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x |
→ Chemical Group |
(purple background, 'x', labelled with number + name, e.g. ACE or NH2) |
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extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|' |