1Y01 - JenaLib

Asym./Biol. Unit (Jmol Viewer)

Asym./Biol. Unit - sites (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF AHSP BOUND TO FE(II) ALPHA-HEMOGLOBIN

Authors :   L. Feng, D. A. Gell, S. Zhou, L. Gu, A. J. Gow, M. J. Weiss, J. P. Mackay, Y. Shi

Date :   14 Nov 04 (Deposition) - 21 Dec 04 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.80

Chains :   Asym./Biol. Unit : A,B

Keywords :   Ahsp, Alpha Hemoglobin, Stabilization Of Alpha Hemoglobin, Hemoglobin Oxidation And Precipitation, Recognition, Oxygen Storage/Transport Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   L. Feng, D. A. Gell, S. Zhou, L. Gu, Y. Kong, J. Li, M. Hu, N. Yan, C. Lee, A. M. Rich, R. S. Armstrong, P. A. Lay, A. J. Gow, M. J. Weiss, J. P. Mackay, Y. Shi
Molecular Mechanism Of Ahsp-Mediated Stabilization Of Alpha-Hemoglobin.
Cell(Cambridge, Mass. ) V. 119 629 2004
PubMed-ID: 15550245 | Reference-DOI: 10.1016/J.CELL.2004.11.025
(for further references see the PDB file header)

Molecule 1 - ALPHA-HEMOGLOBIN STABILIZING PROTEIN
	Chains	:	A
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Gene	:	AHSP, EDRF, ERAF
	Mutation	:	YES
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	ERYTHROID ASSOCIATED FACTOR, ERYTHROID DIFFERENTIATION RELATED FACTOR, AHSP

Molecule 2 - HEMOGLOBIN ALPHA CHAIN
	Chains	:	B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Gene	:	HBA1
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606

		1	2
Asymmetric/Biological Unit	:	A	B

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (3, 3)

No.	Name	Count	Type	Full Name
1	CHK	1	Ligand/Ion	6-[(CYCLOHEXYLACETYL)(2-HYDROXYETHYL)AMINO]-6-DEOXY-D-XYLO-HEXITOL
2	HEM	1	Ligand/Ion	PROTOPORPHYRIN IX CONTAINING FE
3	OXY	1	Ligand/Ion	OXYGEN MOLECULE

Asymmetric Unit (3, 3)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	PHE B:43 , HIS B:58 , LYS B:61 , VAL B:62 , ALA B:65 , PHE B:98 , LEU B:101 , LEU B:136 , OXY B:143 , CHK B:144 , HOH B:150	BINDING SITE FOR RESIDUE HEM B 142
2	AC2	SOFTWARE	PHE B:98 , HEM B:142	BINDING SITE FOR RESIDUE OXY B 143
3	AC3	SOFTWARE	PHE B:33 , PHE B:43 , PHE B:46 , HIS B:58 , LYS B:61 , HEM B:142	BINDING SITE FOR RESIDUE CHK B 144

(no "SS Bond" information available for 1Y01)

(no "Cis Peptide Bond" information available for 1Y01)

Asymmetric/Biological Unit (125, 125)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
001	UniProt	VAR_002720	L	3	R	HBA_HUMAN	Polymorphism	36030576	B	L	2	R
002	UniProt	VAR_002721	A	6	D	HBA_HUMAN	Polymorphism	34090856	B	A	5	D
003	UniProt	VAR_002722	A	6	P	HBA_HUMAN	Polymorphism	34751764	B	A	5	P
004	UniProt	VAR_002723	D	7	A	HBA_HUMAN	Polymorphism	33986902	B	D	6	A
005	UniProt	VAR_002724	D	7	G	HBA_HUMAN	Polymorphism	281864805	B	D	6	G
006	UniProt	VAR_002725	D	7	N	HBA_HUMAN	Polymorphism	33961916	B	D	6	N
007	UniProt	VAR_002726	D	7	V	HBA_HUMAN	Polymorphism	281864805	B	D	6	V
008	UniProt	VAR_002727	D	7	Y	HBA_HUMAN	Polymorphism	281864806	B	D	6	Y
009	UniProt	VAR_002728	K	8	E	HBA_HUMAN	Polymorphism	34817956	B	K	7	E
010	UniProt	VAR_038149	N	10	T	HBA_HUMAN	Polymorphism	281860608	B	N	9	T
011	UniProt	VAR_014605	V	11	F	HBA_HUMAN	Polymorphism	1799896	B	V	10	F
012	UniProt	VAR_002729	K	12	E	HBA_HUMAN	Polymorphism	33938574	B	K	11	E
013	UniProt	VAR_002730	A	13	D	HBA_HUMAN	Polymorphism	35615982	B	A	12	D
014	UniProt	VAR_038150	A	14	P	HBA_HUMAN	Polymorphism	35331909	B	A	13	P
015	UniProt	VAR_002731	W	15	R	HBA_HUMAN	Polymorphism	33964317	B	W	14	R
016	UniProt	VAR_002732	G	16	R	HBA_HUMAN	Polymorphism	35816645	B	G	15	R
017	UniProt	VAR_002733	K	17	M	HBA_HUMAN	Polymorphism	35210126	B	K	16	M
018	UniProt	VAR_002734	K	17	N	HBA_HUMAN	Polymorphism	33923844	B	K	16	N
019	UniProt	VAR_002735	G	19	D	HBA_HUMAN	Polymorphism	35993097	B	G	18	D
020	UniProt	VAR_002736	G	19	R	HBA_HUMAN	Polymorphism	34504387	B	G	18	R
021	UniProt	VAR_002737	A	20	D	HBA_HUMAN	Unclassified	---	B	A	19	D
022	UniProt	VAR_002738	A	20	E	HBA_HUMAN	Polymorphism	35628685	B	A	19	E
023	UniProt	VAR_002739	H	21	Q	HBA_HUMAN	Polymorphism	41525149	B	H	20	Q
024	UniProt	VAR_002740	H	21	R	HBA_HUMAN	Polymorphism	33943087	B	H	20	R
025	UniProt	VAR_002741	A	22	D	HBA_HUMAN	Polymorphism	11548605	B	A	21	D
026	UniProt	VAR_002742	A	22	P	HBA_HUMAN	Polymorphism	34324664	B	A	21	P
027	UniProt	VAR_002743	G	23	D	HBA_HUMAN	Polymorphism	34608326	B	G	22	D
028	UniProt	VAR_002744	E	24	G	HBA_HUMAN	Polymorphism	33939421	B	E	23	G
029	UniProt	VAR_002745	E	24	K	HBA_HUMAN	Polymorphism	281864819	B	E	23	K
030	UniProt	VAR_002746	Y	25	H	HBA_HUMAN	Polymorphism	281864821	B	Y	24	H
031	UniProt	VAR_002747	A	27	E	HBA_HUMAN	Polymorphism	281864822	B	A	26	E
032	UniProt	VAR_025387	A	27	V	HBA_HUMAN	Polymorphism	281864822	B	A	26	V
033	UniProt	VAR_002748	E	28	D	HBA_HUMAN	Polymorphism	281865556	B	E	27	D
034	UniProt	VAR_002749	E	28	G	HBA_HUMAN	Polymorphism	281864823	B	E	27	G
035	UniProt	VAR_002750	E	28	V	HBA_HUMAN	Polymorphism	281864823	B	E	27	V
036	UniProt	VAR_002751	E	31	K	HBA_HUMAN	Polymorphism	111033605	B	E	30	K
037	UniProt	VAR_025002	R	32	K	HBA_HUMAN	Polymorphism	281864543	B	R	31	K
038	UniProt	VAR_002752	R	32	S	HBA_HUMAN	Polymorphism	111033606	B	R	31	S
039	UniProt	VAR_002753	L	35	R	HBA_HUMAN	Polymorphism	281864825	B	L	34	R
040	UniProt	VAR_002754	P	38	R	HBA_HUMAN	Polymorphism	281864826	B	P	37	R
041	UniProt	VAR_002756	K	41	M	HBA_HUMAN	Polymorphism	281864828	B	K	40	M
042	UniProt	VAR_002757	T	42	S	HBA_HUMAN	Polymorphism	281860623	B	T	41	S
043	UniProt	VAR_002758	F	44	L	HBA_HUMAN	Polymorphism	41491146	B	F	43	L
044	UniProt	VAR_002759	P	45	L	HBA_HUMAN	Polymorphism	41514946	B	P	44	L
045	UniProt	VAR_002760	P	45	R	HBA_HUMAN	Polymorphism	281864830	B	P	44	R
046	UniProt	VAR_002761	H	46	Q	HBA_HUMAN	Polymorphism	281860624	B	H	45	Q
047	UniProt	VAR_002762	H	46	R	HBA_HUMAN	Polymorphism	281864831	B	H	45	R
048	UniProt	VAR_002763	D	48	A	HBA_HUMAN	Polymorphism	281864833	B	D	47	A
049	UniProt	VAR_002764	D	48	G	HBA_HUMAN	Polymorphism	281864833	B	D	47	G
050	UniProt	VAR_002765	D	48	H	HBA_HUMAN	Polymorphism	281864834	B	D	47	H
051	UniProt	VAR_002766	D	48	Y	HBA_HUMAN	Polymorphism	281864834	B	D	47	Y
052	UniProt	VAR_002767	L	49	R	HBA_HUMAN	Polymorphism	41392146	B	L	48	R
053	UniProt	VAR_002768	S	50	R	HBA_HUMAN	Polymorphism	41518249	B	S	49	R
054	UniProt	VAR_002769	H	51	R	HBA_HUMAN	Polymorphism	281864835	B	H	50	R
055	UniProt	VAR_002770	G	52	D	HBA_HUMAN	Polymorphism	281864836	B	G	51	D
056	UniProt	VAR_002771	G	52	R	HBA_HUMAN	Polymorphism	281864837	B	G	51	R
057	UniProt	VAR_002772	A	54	D	HBA_HUMAN	Polymorphism	281864838	B	A	53	D
058	UniProt	VAR_002773	Q	55	R	HBA_HUMAN	Polymorphism	281864839	B	Q	54	R
059	UniProt	VAR_002774	K	57	R	HBA_HUMAN	Polymorphism	281864841	B	K	56	R
060	UniProt	VAR_002775	K	57	T	HBA_HUMAN	Polymorphism	281864841	B	K	56	T
061	UniProt	VAR_002776	G	58	R	HBA_HUMAN	Polymorphism	281864843	B	G	57	R
062	UniProt	VAR_025388	H	59	Q	HBA_HUMAN	Polymorphism	41378349	B	H	58	Q
063	UniProt	VAR_002777	H	59	Y	HBA_HUMAN	Polymorphism	281864845	B	H	58	Y
064	UniProt	VAR_002778	G	60	D	HBA_HUMAN	Polymorphism	28928878	B	G	59	D
065	UniProt	VAR_002779	G	60	V	HBA_HUMAN	Polymorphism	281864846	B	G	59	V
066	UniProt	VAR_002780	K	61	N	HBA_HUMAN	Polymorphism	28928887	B	K	60	N
067	UniProt	VAR_002782	K	62	N	HBA_HUMAN	Polymorphism	33985574	B	K	61	N
068	UniProt	VAR_002783	K	62	T	HBA_HUMAN	Polymorphism	281865558	B	K	61	T
069	UniProt	VAR_002784	V	63	M	HBA_HUMAN	Polymorphism	41515649	B	V	62	M
070	UniProt	VAR_002785	A	64	D	HBA_HUMAN	Polymorphism	281864848	B	A	63	D
071	UniProt	VAR_002786	D	65	Y	HBA_HUMAN	Polymorphism	281864849	B	D	64	Y
072	UniProt	VAR_002787	N	69	K	HBA_HUMAN	Polymorphism	1060339	B	N	68	K
073	UniProt	VAR_002788	A	72	E	HBA_HUMAN	Polymorphism	281864853	B	A	71	E
074	UniProt	VAR_002789	A	72	V	HBA_HUMAN	Polymorphism	281864853	B	A	71	V
075	UniProt	VAR_002790	H	73	R	HBA_HUMAN	Polymorphism	281864854	B	H	72	R
076	UniProt	VAR_002794	D	76	A	HBA_HUMAN	Polymorphism	33991223	B	D	75	A
077	UniProt	VAR_002795	D	76	H	HBA_HUMAN	Polymorphism	281864858	B	D	75	H
078	UniProt	VAR_002796	M	77	K	HBA_HUMAN	Polymorphism	281864860	B	M	76	K
079	UniProt	VAR_002797	M	77	T	HBA_HUMAN	Polymorphism	281864860	B	M	76	T
080	UniProt	VAR_002798	P	78	R	HBA_HUMAN	Polymorphism	281864861	B	P	77	R
081	UniProt	VAR_002799	N	79	H	HBA_HUMAN	Polymorphism	111033602	B	N	78	H
082	UniProt	VAR_002800	N	79	K	HBA_HUMAN	Polymorphism	281860607	B	N	78	K
083	UniProt	VAR_012662	A	80	G	HBA_HUMAN	Polymorphism	281860603	B	A	79	G
084	UniProt	VAR_002801	L	81	R	HBA_HUMAN	Polymorphism	281864863	B	L	80	R
085	UniProt	VAR_002813	R	93	Q	HBA_HUMAN	Polymorphism	281864875	B	R	92	Q
086	UniProt	VAR_020775	R	93	W	HBA_HUMAN	Polymorphism	281864876	B	R	92	W
087	UniProt	VAR_025389	D	95	A	HBA_HUMAN	Polymorphism	281864879	B	D	94	A
088	UniProt	VAR_002814	D	95	Y	HBA_HUMAN	Polymorphism	281864878	B	D	94	Y
089	UniProt	VAR_002815	P	96	A	HBA_HUMAN	Polymorphism	281864881	B	P	95	A
090	UniProt	VAR_002816	P	96	T	HBA_HUMAN	Polymorphism	281864881	B	P	95	T
091	UniProt	VAR_002817	N	98	K	HBA_HUMAN	Polymorphism	41338947	B	N	97	K
092	UniProt	VAR_002818	K	100	E	HBA_HUMAN	Polymorphism	281864882	B	K	99	E
093	UniProt	VAR_002819	S	103	R	HBA_HUMAN	Polymorphism	41344646	B	S	102	R
094	UniProt	VAR_002820	H	104	R	HBA_HUMAN	Polymorphism	63750752	B	H	103	R
095	UniProt	VAR_025390	H	104	Y	HBA_HUMAN	Polymorphism	63750073	B	H	103	Y
096	UniProt	VAR_002821	L	110	R	HBA_HUMAN	Polymorphism	41479844	B	L	109	R
097	UniProt	VAR_002822	A	111	D	HBA_HUMAN	Polymorphism	28928889	B	A	110	D
098	UniProt	VAR_002823	H	113	D	HBA_HUMAN	Polymorphism	281864885	B	H	112	D
099	UniProt	VAR_002824	L	114	H	HBA_HUMAN	Polymorphism	281860618	B	L	113	H
100	UniProt	VAR_002825	P	115	L	HBA_HUMAN	Polymorphism	267607269	B	P	114	L
101	UniProt	VAR_002826	P	115	R	HBA_HUMAN	Polymorphism	267607269	B	P	114	R
102	UniProt	VAR_002827	P	115	S	HBA_HUMAN	Polymorphism	281864887	B	P	114	S
103	UniProt	VAR_002828	A	116	D	HBA_HUMAN	Polymorphism	281864888	B	A	115	D
104	UniProt	VAR_002829	E	117	A	HBA_HUMAN	Polymorphism	281864946	B	E	116	A
105	UniProt	VAR_002833	A	121	E	HBA_HUMAN	Polymorphism	36075744	B	A	120	E
106	UniProt	VAR_002834	V	122	M	HBA_HUMAN	Polymorphism	35187567	B	V	121	M
107	UniProt	VAR_002835	H	123	Q	HBA_HUMAN	Polymorphism	41479347	B	H	122	Q
108	UniProt	VAR_002836	L	126	P	HBA_HUMAN	Polymorphism	41397847	B	L	125	P
109	UniProt	VAR_025391	L	126	R	HBA_HUMAN	Polymorphism	41397847	B	L	125	R
110	UniProt	VAR_025392	D	127	G	HBA_HUMAN	Polymorphism	33957766	B	D	126	G
111	UniProt	VAR_002837	D	127	V	HBA_HUMAN	Polymorphism	33957766	B	D	126	V
112	UniProt	VAR_002838	D	127	Y	HBA_HUMAN	Polymorphism	33933481	B	D	126	Y
113	UniProt	VAR_002839	K	128	N	HBA_HUMAN	Polymorphism	33972894	B	K	127	N
114	UniProt	VAR_002840	L	130	P	HBA_HUMAN	Polymorphism	281864889	B	L	129	P
115	UniProt	VAR_002842	A	131	D	HBA_HUMAN	Polymorphism	41528545	B	A	130	D
116	UniProt	VAR_002841	A	131	P	HBA_HUMAN	Polymorphism	41529844	B	A	130	P
117	UniProt	VAR_002843	S	132	P	HBA_HUMAN	Polymorphism	63751417	B	S	131	P
118	UniProt	VAR_002844	S	134	R	HBA_HUMAN	Polymorphism	41514946	B	S	133	R
119	UniProt	VAR_002845	V	136	E	HBA_HUMAN	Polymorphism	63749809	B	V	135	E
120	UniProt	VAR_002846	L	137	M	HBA_HUMAN	Polymorphism	41364652	B	L	136	M
121	UniProt	VAR_002847	L	137	P	HBA_HUMAN	Polymorphism	41469945	B	L	136	P
122	UniProt	VAR_035242	L	137	R	HBA_HUMAN	Polymorphism	41469945	B	L	136	R
123	UniProt	VAR_002848	S	139	P	HBA_HUMAN	Polymorphism	63750801	B	S	138	P
124	UniProt	VAR_002849	K	140	E	HBA_HUMAN	Polymorphism	41361546	B	K	139	E
125	UniProt	VAR_002850	K	140	T	HBA_HUMAN	Polymorphism	56348461	B	K	139	T

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Asymmetric/Biological Unit (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	GLOBIN	PS01033	Globin family profile.	HBA_HUMAN	3-142	1	B:2-139

Asymmetric/Biological Unit (5, 5)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.1	ENST00000302312	1	ENSE00001171596	chr16:31539185-31539283	99	AHSP_HUMAN	-	0	0	-	-
1.2	ENST00000302312	2	ENSE00001171609	chr16:31539457-31539535	79	AHSP_HUMAN	1-25	25	1	A:3-25	23
1.3	ENST00000302312	3	ENSE00001171603	chr16:31539779-31540124	346	AHSP_HUMAN	26-102	77	1	A:26-91	66

2.3a	ENST00000320868	3a	ENSE00001723291	chr16:226679-226810	132	HBA_HUMAN	1-32	32	1	B:2-31	30
2.3e	ENST00000320868	3e	ENSE00001710570	chr16:226928-227132	205	HBA_HUMAN	32-100	69	1	B:31-99 (gaps)	69
2.4b	ENST00000320868	4b	ENSE00001261694	chr16:227282-227521	240	HBA_HUMAN	101-142	42	1	B:100-139	40

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:89
 aligned with AHSP_HUMAN | Q9NZD4 from UniProtKB/Swiss-Prot  Length:102

    Alignment length:89
                                    12        22        32        42        52        62        72        82         
           AHSP_HUMAN     3 LLKANKDLISAGLKEFSVLLNQQVFNDPLVSEEDMVTVVEDWMNFYINYYRQQVTGEPQERDKALQELRQELNTLANPFLAKYRDFLKS  91
               SCOP domains d1y01a_ A: Alpha-hemoglobin stabilizing protein AHSP                                      SCOP domains
               CATH domains ----------------------------------------------------------------------------------------- CATH domains
               Pfam domains --AHSP-1y01A01 A:5-91                                                                     Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------- PROSITE
               Transcript 1 Exon 1.2  PDB: A:3-25  Exon 1.3  PDB: A:26-91 UniProt: 26-102 [INCOMPLETE]                Transcript 1
                 1y01 A   3 LLKANKDLISAGLKEFSVLLNQQVFNDALVSEEDMVTVVEDWMNFYINYYRQQVTGEPQERDKALQELRQELNTLANPFLAKYRDFLKS  91
                                    12        22        32        42        52        62        72        82

Chain B from PDB  Type:PROTEIN  Length:126
 aligned with HBA_HUMAN | P69905 from UniProtKB/Swiss-Prot  Length:142

    Alignment length:138
                                    12        22        32        42        52        62        72        82        92       102       112       122       132        
            HBA_HUMAN     3 LSPADKTNVKAAWGKVGAHAGEYGAEALERMFLSFPTTKTYFPHFDLSHGSAQVKGHGKKVADALTNAVAHVDDMPNALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHLPAEFTPAVHASLDKFLASVSTVLTSK 140
               SCOP domains d1y01b_ B: Hemoglobin, alpha-chain                                                                                                         SCOP domains
               CATH domains 1y01B00 B:2-139 Globins                                                                                                                    CATH domains
               Pfam domains ----Globin-1y01B01 B:6-106                                                                               --------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhh.-......-----------...hhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
             SAPs(SNPs) (1) R--DAE-TFEDPRRM-DDQDDGH-ED--KK--R--R--MS-LLQ-ARRRD-DR-RRQDNNMDY---K--ER--AKRHGR-----------Q-AA-K-E--RR-----RD-DHLDA---EMQ--PGN-PDP-R-EM-PE SAPs(SNPs) (1)
             SAPs(SNPs) (2) ---PG---------N-RERP-K--VG---S------------RR-G---R----T-YV-T---------V---HT-K-------------W-YT-------Y----------R----------RV---P-----P--T SAPs(SNPs) (2)
             SAPs(SNPs) (3) ----N--------------------V-------------------H------------------------------------------------------------------S-----------Y---------R--- SAPs(SNPs) (3)
             SAPs(SNPs) (4) ----V----------------------------------------Y-------------------------------------------------------------------------------------------- SAPs(SNPs) (4)
             SAPs(SNPs) (5) ----Y------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (5)
                    PROSITE GLOBIN  PDB: B:2-139 UniProt: 3-142                                                                                                        PROSITE
           Transcript 2 (1) Exon 2.3a  PDB: B:2-31        --------------------------------------------------------------------Exon 2.4b  PDB: B:100-139 [INCOMPLETE]   Transcript 2 (1)
           Transcript 2 (2) -----------------------------Exon 2.3e  PDB: B:31-99 (gaps) UniProt: 32-100                       ---------------------------------------- Transcript 2 (2)
                 1y01 B   2 LSPADKTNVKAAWGKVGAHAGEYGAEALERMFLSFPTTKTYFPHFDLSHGSAQVKGHGKKVADALTNAVAHV-DMPNAL-----------RVDPVNFKLLSHCLLVTLAAHLPAEFTPAVHASLDKFLASVSTVLTSK 139
                                    11        21        31        41        51        61        71 | |    |-         -|      101       111       121       131        
                                                                                                  73 |   80          92                                               
                                                                                                    75

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Mainly Alpha (13335)

Architecture: Orthogonal Bundle (10391)

Topology: Globin-like (786)

Homologous Superfamily: Globins (743)

Human (Homo sapiens) (198)

1y01B00

B:2-139

Asymmetric/Biological Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: Globin (291)

Family: Globin (264)

Homo sapiens (Human) (107)

Globin-1y01B01

B:6-106

Clan: no clan defined [family: AHSP] (6)

Family: AHSP (6)

Homo sapiens (Human) (6)

AHSP-1y01A01

A:5-91

Asymmetric/Biological Unit(hide GO term definitions)

Chain A (AHSP_HUMAN | Q9NZD4)

molecular function
	GO:0030492	hemoglobin binding	Interacting selectively and non-covalently with hemoglobin, an oxygen carrying, conjugated protein containing four heme groups and globin.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
	GO:0051082	unfolded protein binding	Interacting selectively and non-covalently with an unfolded protein.
biological process
	GO:0030218	erythrocyte differentiation	The process in which a myeloid precursor cell acquires specializes features of an erythrocyte.
	GO:0020027	hemoglobin metabolic process	The chemical reactions and pathways involving hemoglobin, including its uptake and utilization.
	GO:0030097	hemopoiesis	The process whose specific outcome is the progression of the myeloid and lymphoid derived organ/tissue systems of the blood and other parts of the body over time, from formation to the mature structure. The site of hemopoiesis is variable during development, but occurs primarily in bone marrow or kidney in many adult vertebrates.
	GO:0006457	protein folding	The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.
	GO:0050821	protein stabilization	Any process involved in maintaining the structure and integrity of a protein and preventing it from degradation or aggregation.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0005833	hemoglobin complex	An iron-containing, oxygen carrying complex. In vertebrates it is made up of two pairs of associated globin polypeptide chains, each chain carrying a noncovalently bound heme prosthetic group.

Chain B (HBA_HUMAN | P69905)

molecular function
	GO:0031720	haptoglobin binding	Interacting selectively and non-covalently with a haptoglobin, any alpha2 globulin of blood plasma that can combine with free oxyhemoglobin to form a stable complex.
	GO:0020037	heme binding	Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring.
	GO:0005506	iron ion binding	Interacting selectively and non-covalently with iron (Fe) ions.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0019825	oxygen binding	Interacting selectively and non-covalently with oxygen (O2).
	GO:0005344	oxygen transporter activity	Enables the directed movement of oxygen into, out of or within a cell, or between cells.
	GO:0004601	peroxidase activity	Catalysis of the reaction: donor + hydrogen peroxide = oxidized donor + 2 H2O.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
	GO:0015701	bicarbonate transport	The directed movement of bicarbonate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
	GO:0098869	cellular oxidant detoxification	Any process carried out at the cellular level that reduces or removes the toxicity superoxide radicals or hydrogen peroxide.
	GO:0042744	hydrogen peroxide catabolic process	The chemical reactions and pathways resulting in the breakdown of hydrogen peroxide (H2O2).
	GO:0015671	oxygen transport	The directed movement of oxygen (O2) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
	GO:0010942	positive regulation of cell death	Any process that increases the rate or frequency of cell death. Cell death is the specific activation or halting of processes within a cell so that its vital functions markedly cease, rather than simply deteriorating gradually over time, which culminates in cell death.
	GO:0051291	protein heterooligomerization	The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of component monomers that are not all identical. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer.
	GO:0006898	receptor-mediated endocytosis	An endocytosis process in which cell surface receptors ensure specificity of transport. A specific receptor on the cell surface binds tightly to the extracellular macromolecule (the ligand) that it recognizes; the plasma-membrane region containing the receptor-ligand complex then undergoes endocytosis, forming a transport vesicle containing the receptor-ligand complex and excluding most other plasma-membrane proteins. Receptor-mediated endocytosis generally occurs via clathrin-coated pits and vesicles.
	GO:0042542	response to hydrogen peroxide	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hydrogen peroxide (H2O2) stimulus.
	GO:0006810	transport	The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
	GO:0072562	blood microparticle	A phospholipid microvesicle that is derived from any of several cell types, such as platelets, blood cells, endothelial cells, or others, and contains membrane receptors as well as other proteins characteristic of the parental cell. Microparticles are heterogeneous in size, and are characterized as microvesicles free of nucleic acids.
	GO:0005829	cytosol	The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
	GO:0022627	cytosolic small ribosomal subunit	The small subunit of a ribosome located in the cytosol.
	GO:0071682	endocytic vesicle lumen	The volume enclosed by the membrane of an endocytic vesicle.
	GO:0070062	extracellular exosome	A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
	GO:0005576	extracellular region	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
	GO:0031838	haptoglobin-hemoglobin complex	A protein complex formed by the stable binding of a haptoglobin to hemoglobin.
	GO:0005833	hemoglobin complex	An iron-containing, oxygen carrying complex. In vertebrates it is made up of two pairs of associated globin polypeptide chains, each chain carrying a noncovalently bound heme prosthetic group.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

Asymmetric/Biological Unit
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	1y01
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	HBA_HUMAN \| P69905
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(no "Related Entries Specified in the PDB File" available for 1Y01)

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 3)

Sites (3, 3)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

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SAPs(SNPs)/Variants (125, 125)

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Exons (5, 5)

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