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1USQ
Asym. Unit
Info
Asym.Unit (155 KB)
Biol.Unit 1 (76 KB)
Biol.Unit 2 (77 KB)
Biol.Unit 3 (76 KB)
Biol.Unit 4 (77 KB)
Biol.Unit 5 (77 KB)
Biol.Unit 6 (78 KB)
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(1)
Title
:
COMPLEX OF E. COLI DRAE ADHESIN WITH CHLORAMPHENICOL
Authors
:
K. L. Anderson, J. Billington, D. Pettigrew, E. Cota, P. Roversi, P. Simpson, H. A. Chen, P. Urvil, L. Dumerle, P. Barlow, E. Medof, R. A. G. Smith, B. Nowicki, C. Le Bouguenec, S. M. Lea, S. Matthews
Date
:
27 Nov 03 (Deposition) - 31 Aug 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A (3x)
Biol. Unit 2: B (3x)
Biol. Unit 3: C (3x)
Biol. Unit 4: D (3x)
Biol. Unit 5: E (3x)
Biol. Unit 6: F (3x)
Keywords
:
Adhesin, Drae, Fimbrial Adhesin, Chloramphenicol, Upec, Daec
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. Pettigrew, K. L. Anderson, J. Billington, E. Cota, P. Simpson, P. Urvil, F. Rabuzin, P. Roversi, B. Nowicki, L. Du Merle, C. Le Bouguenec, S. Matthews, S. M. Lea
High Resolution Studies Of The Afa/Dr Adhesin Drae And Its Interaction With Chloramphenicol
J. Biol. Chem. V. 279 46851 2004
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(3, 31)
Info
All Hetero Components
1a: CHLORAMPHENICOL (CLMa)
1b: CHLORAMPHENICOL (CLMb)
1c: CHLORAMPHENICOL (CLMc)
1d: CHLORAMPHENICOL (CLMd)
1e: CHLORAMPHENICOL (CLMe)
1f: CHLORAMPHENICOL (CLMf)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
2h: 1,2-ETHANEDIOL (EDOh)
2i: 1,2-ETHANEDIOL (EDOi)
2j: 1,2-ETHANEDIOL (EDOj)
2k: 1,2-ETHANEDIOL (EDOk)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
3g: SULFATE ION (SO4g)
3h: SULFATE ION (SO4h)
3i: SULFATE ION (SO4i)
3j: SULFATE ION (SO4j)
3k: SULFATE ION (SO4k)
3l: SULFATE ION (SO4l)
3m: SULFATE ION (SO4m)
3n: SULFATE ION (SO4n)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CLM
6
Ligand/Ion
CHLORAMPHENICOL
2
EDO
11
Ligand/Ion
1,2-ETHANEDIOL
3
SO4
14
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(31, 31)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
THR A:8 , GLY A:9 , THR A:10 , GLY A:24 , ASP A:25 , HOH A:2006 , HOH A:2011 , HOH A:2012 , HOH A:2106
BINDING SITE FOR RESIDUE SO4 A1139
02
AC2
SOFTWARE
ASP A:89 , ASN A:90 , HOH A:2107 , ASP D:52 , GLY D:106 , SER D:107 , HOH D:2056
BINDING SITE FOR RESIDUE SO4 A1140
03
AC3
SOFTWARE
GLU A:17 , LYS A:18 , ARG A:32 , HOH A:2110
BINDING SITE FOR RESIDUE SO4 A1144
04
AC4
SOFTWARE
THR B:8 , GLY B:9 , THR B:10 , GLY B:24 , ASP B:25 , HOH B:2009 , HOH B:2010 , HOH B:2109 , HOH B:2110
BINDING SITE FOR RESIDUE SO4 B1139
05
AC5
SOFTWARE
ASP B:89 , ASN B:90 , HOH B:2111 , ASP F:52 , GLY F:106 , SER F:107 , HOH F:2054
BINDING SITE FOR RESIDUE SO4 B1140
06
AC6
SOFTWARE
THR C:8 , GLY C:9 , THR C:10 , GLY C:24 , ASP C:25 , HOH C:2010 , HOH C:2110 , HOH C:2111
BINDING SITE FOR RESIDUE SO4 C1139
07
AC7
SOFTWARE
ASP C:89 , ASN C:90 , HOH C:2112 , ASP E:52 , GLY E:106 , SER E:107 , HOH E:2054
BINDING SITE FOR RESIDUE SO4 C1140
08
AC8
SOFTWARE
THR D:8 , GLY D:9 , THR D:10 , GLY D:24 , ASP D:25 , HOH D:2012 , HOH D:2014 , HOH D:2027 , HOH D:2126 , HOH D:2127
BINDING SITE FOR RESIDUE SO4 D1139
09
AC9
SOFTWARE
ASP A:52 , GLY A:106 , SER A:107 , ASP D:89 , ASN D:90 , HOH D:2128
BINDING SITE FOR RESIDUE SO4 D1140
10
BC1
SOFTWARE
GLU D:17 , LYS D:18 , ARG D:32 , HOH D:2130
BINDING SITE FOR RESIDUE SO4 D1143
11
BC2
SOFTWARE
THR E:8 , GLY E:9 , THR E:10 , GLY E:24 , ASP E:25 , HOH E:2008 , HOH E:2010 , HOH E:2025 , HOH E:2115
BINDING SITE FOR RESIDUE SO4 E1139
12
BC3
SOFTWARE
ASP C:52 , GLY C:106 , SER C:107 , HOH C:2047 , ASP E:89 , ASN E:90 , HOH E:2116
BINDING SITE FOR RESIDUE SO4 E1140
13
BC4
SOFTWARE
THR F:8 , GLY F:9 , THR F:10 , GLY F:24 , ASP F:25 , HOH F:2120 , HOH F:2121
BINDING SITE FOR RESIDUE SO4 F1140
14
BC5
SOFTWARE
ASP B:52 , GLY B:106 , SER B:107 , HOH B:2050 , ASP F:89 , ASN F:90 , HOH F:2122
BINDING SITE FOR RESIDUE SO4 F1141
15
BC6
SOFTWARE
SER A:5 , GLY A:6 , VAL A:15 , PRO A:125 , GLY A:126
BINDING SITE FOR RESIDUE EDO A1141
16
BC7
SOFTWARE
SER A:74 , ASN A:76 , ASP A:79 , PRO A:124 , PRO A:125 , HOH A:2108
BINDING SITE FOR RESIDUE EDO A1142
17
BC8
SOFTWARE
PRO A:40 , GLY A:42 , PRO A:43 , ILE A:111 , GLY A:113 , ILE A:114 , TYR A:115 , ARG D:22 , LEU D:26
BINDING SITE FOR RESIDUE CLM A1143
18
BC9
SOFTWARE
SER B:5 , GLY B:6 , VAL B:15 , PRO B:125 , GLY B:126
BINDING SITE FOR RESIDUE EDO B1141
19
CC1
SOFTWARE
SER B:74 , ASN B:76 , ASP B:79 , PRO B:124 , PRO B:125 , HOH B:2112
BINDING SITE FOR RESIDUE EDO B1142
20
CC2
SOFTWARE
PRO B:40 , GLY B:42 , PRO B:43 , ILE B:111 , GLY B:113 , ILE B:114 , TYR B:115 , LEU F:26
BINDING SITE FOR RESIDUE CLM B1143
21
CC3
SOFTWARE
SER C:5 , GLY C:6 , VAL C:15 , THR C:16 , PRO C:125 , GLY C:126
BINDING SITE FOR RESIDUE EDO C1141
22
CC4
SOFTWARE
SER C:74 , ASN C:76 , ASP C:79 , PRO C:124 , PRO C:125 , HOH C:2113
BINDING SITE FOR RESIDUE EDO C1142
23
CC5
SOFTWARE
PRO C:40 , GLY C:42 , PRO C:43 , ILE C:111 , ILE C:114 , TYR C:115 , LEU E:26
BINDING SITE FOR RESIDUE CLM C1143
24
CC6
SOFTWARE
PRO D:4 , SER D:5 , GLY D:6 , VAL D:15 , GLY D:126
BINDING SITE FOR RESIDUE EDO D1141
25
CC7
SOFTWARE
ARG A:22 , LEU A:26 , PRO D:40 , GLY D:42 , PRO D:43 , ILE D:111 , GLY D:113 , ILE D:114 , TYR D:115
BINDING SITE FOR RESIDUE CLM D1142
26
CC8
SOFTWARE
SER E:5 , GLY E:6 , VAL E:15 , PRO E:125 , GLY E:126
BINDING SITE FOR RESIDUE EDO E1141
27
CC9
SOFTWARE
SER E:74 , ASN E:76 , ASP E:79 , PRO E:124 , PRO E:125 , HOH E:2117
BINDING SITE FOR RESIDUE EDO E1142
28
DC1
SOFTWARE
ARG C:22 , LEU C:26 , PRO E:40 , GLY E:42 , PRO E:43 , ILE E:111 , GLY E:113 , ILE E:114 , TYR E:115
BINDING SITE FOR RESIDUE CLM E1143
29
DC2
SOFTWARE
PRO F:4 , SER F:5 , GLY F:6 , VAL F:15 , THR F:16 , PRO F:125 , GLY F:126
BINDING SITE FOR RESIDUE EDO F1142
30
DC3
SOFTWARE
SER F:74 , ASN F:76 , ASP F:79 , PRO F:124 , PRO F:125 , HOH F:2123
BINDING SITE FOR RESIDUE EDO F1143
31
DC4
SOFTWARE
ARG B:22 , LEU B:26 , PRO F:40 , GLY F:42 , PRO F:43 , ILE F:111 , GLY F:113 , ILE F:114 , TYR F:115
BINDING SITE FOR RESIDUE CLM F1144
[
close Site info
]
SAPs(SNPs)/Variants
(1, 6)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_DRAA_ECOLX_001 (R22Y, chain A/B/C/D/E/F, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_DRAA_ECOLX_001
*
R
43
Y
DRAA_ECOLX
---
---
A/B/C/D/E/F
R
22
Y
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
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]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d1usqa_ (A:)
1b: SCOP_d1usqb_ (B:)
1c: SCOP_d1usqc_ (C:)
1d: SCOP_d1usqd_ (D:)
1e: SCOP_d1usqe_ (E:)
1f: SCOP_d1usqf_ (F:)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Common fold of diphtheria toxin/transcription factors/cytochrome f
(364)
Superfamily
:
Bacterial adhesins
(93)
Family
:
Dr-family adhesin
(11)
Protein domain
:
DraA/Afimbrial adhesin Afa-III
(11)
Escherichia coli [TaxId: 562]
(11)
1a
d1usqa_
A:
1b
d1usqb_
B:
1c
d1usqc_
C:
1d
d1usqd_
D:
1e
d1usqe_
E:
1f
d1usqf_
F:
[
close SCOP info
]
CATH Domains
(1, 6)
Info
all CATH domains
1a: CATH_1usqA00 (A:0-138)
1b: CATH_1usqE00 (E:0-138)
1c: CATH_1usqF00 (F:0-139)
1d: CATH_1usqB00 (B:0-138)
1e: CATH_1usqC00 (C:0-138)
1f: CATH_1usqD00 (D:0-138)
View:
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Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Afimbrial adhesin afa-iii.
(12)
Escherichia coli. Organism_taxid: 562. Strain: ih11128. Variant: o75:k5:h-.
(2)
1a
1usqA00
A:0-138
1b
1usqE00
E:0-138
1c
1usqF00
F:0-139
1d
1usqB00
B:0-138
1e
1usqC00
C:0-138
1f
1usqD00
D:0-138
[
close CATH info
]
Pfam Domains
(1, 6)
Info
all PFAM domains
1a: PFAM_Adhesin_Dr_1usqF01 (F:2-139)
1b: PFAM_Adhesin_Dr_1usqF02 (F:2-139)
1c: PFAM_Adhesin_Dr_1usqF03 (F:2-139)
1d: PFAM_Adhesin_Dr_1usqF04 (F:2-139)
1e: PFAM_Adhesin_Dr_1usqF05 (F:2-139)
1f: PFAM_Adhesin_Dr_1usqF06 (F:2-139)
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Clans
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Families
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)
(
)
Organisms
(
)
(
)
Clan
:
Adhesin
(36)
Family
:
Adhesin_Dr
(9)
Escherichia coli
(9)
1a
Adhesin_Dr-1usqF01
F:2-139
1b
Adhesin_Dr-1usqF02
F:2-139
1c
Adhesin_Dr-1usqF03
F:2-139
1d
Adhesin_Dr-1usqF04
F:2-139
1e
Adhesin_Dr-1usqF05
F:2-139
1f
Adhesin_Dr-1usqF06
F:2-139
[
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]
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