1R37 - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Title :   ALCOHOL DEHYDROGENASE FROM SULFOLOBUS SOLFATARICUS COMPLEXED WITH NAD(H) AND 2-ETHOXYETHANOL

Authors :   L. Esposito, I. Bruno, F. Sica, C. A. Raia, A. Giordano, M. Rossi, L. Mazzarella, A. Zagari

Date :   30 Sep 03 (Deposition) - 10 Feb 04 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.30

Chains :   Asym. Unit : A,B
Biol. Unit 1: A,B  (2x)

Keywords :   Archaeon, Zinc, Nad(H) Dependent, Holoform, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   L. Esposito, I. Bruno, F. Sica, C. A. Raia, A. Giordano, M. Rossi, L. Mazzarella, A. Zagari
Crystal Structure Of A Ternary Complex Of The Alcohol Dehydrogenase From Sulfolobus Solfataricus
Biochemistry V. 42 14397 2003
PubMed-ID: 14661950 | Reference-DOI: 10.1021/BI035271B
(for further references see the PDB file header)

Molecule 1 - NAD-DEPENDENT ALCOHOL DEHYDROGENASE
	Chains	:	A, B
	EC Number	:	1.1.1.1
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PTRC99A
	Expression System Strain	:	RB791
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	ADH OR SSO2536
	Organism Scientific	:	SULFOLOBUS SOLFATARICUS
	Organism Taxid	:	2287
	Other Details	:	HOLO-ENZYME FORM

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (2x)	:	A	B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 8)

No.	Name	Count	Type	Full Name
1	ETX	2	Ligand/Ion	2-ETHOXYETHANOL
2	NAD	2	Ligand/Ion	NICOTINAMIDE-ADENINE-DINUCLEOTIDE
3	ZN	4	Ligand/Ion	ZINC ION

Biological Unit 1 (2, 8)

No.	Name	Count	Type	Full Name
1	ETX	4	Ligand/Ion	2-ETHOXYETHANOL
2	NAD	4	Ligand/Ion	NICOTINAMIDE-ADENINE-DINUCLEOTIDE
3	ZN	-1	Ligand/Ion	ZINC ION

Asymmetric Unit (12, 12)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	CYS A:38 , HIS A:68 , CYS A:154 , NAD A:403 , ETX A:600	BINDING SITE FOR RESIDUE ZN A 500
02	AC2	SOFTWARE	GLU A:98 , CYS A:101 , CYS A:104 , CYS A:112	BINDING SITE FOR RESIDUE ZN A 400
03	AC3	SOFTWARE	CYS B:38 , HIS B:68 , CYS B:154 , NAD B:403 , ETX B:600	BINDING SITE FOR RESIDUE ZN B 500
04	AC4	SOFTWARE	GLU B:98 , CYS B:101 , CYS B:104 , CYS B:112	BINDING SITE FOR RESIDUE ZN B 400
05	AC5	SOFTWARE	CYS A:38 , HIS A:39 , SER A:40 , HIS A:43 , CYS A:154 , THR A:158 , GLY A:178 , GLY A:180 , GLY A:181 , GLY A:182 , LEU A:183 , ASP A:203 , VAL A:204 , ARG A:205 , LEU A:247 , ASN A:248 , VAL A:270 , GLY A:271 , LEU A:272 , PHE A:273 , SER A:294 , LEU A:295 , VAL A:296 , LEU A:334 , ARG A:342 , ZN A:500 , ETX A:600 , HOH A:605 , HOH A:613 , HOH A:650 , HOH A:664 , HOH A:704 , THR B:285	BINDING SITE FOR RESIDUE NAD A 403
06	AC6	SOFTWARE	SER A:40 , PHE A:49 , HIS A:68 , TRP A:95 , TRP A:117 , CYS A:154 , NAD A:403 , ZN A:500	BINDING SITE FOR RESIDUE ETX A 600
07	AC7	SOFTWARE	THR A:285 , CYS B:38 , HIS B:39 , SER B:40 , HIS B:43 , CYS B:154 , THR B:158 , GLY B:178 , GLY B:180 , GLY B:181 , GLY B:182 , LEU B:183 , ASP B:203 , VAL B:204 , ARG B:205 , LEU B:247 , ASN B:248 , VAL B:270 , GLY B:271 , LEU B:272 , PHE B:273 , SER B:294 , LEU B:295 , VAL B:296 , LEU B:334 , ARG B:342 , ZN B:500 , ETX B:600 , HOH B:606 , HOH B:612 , HOH B:617 , HOH B:646 , HOH B:654	BINDING SITE FOR RESIDUE NAD B 403
08	AC8	SOFTWARE	SER B:40 , PHE B:49 , HIS B:68 , TRP B:95 , TRP B:117 , CYS B:154 , NAD B:403 , ZN B:500	BINDING SITE FOR RESIDUE ETX B 600
09	ZNC	AUTHOR	CYS A:38 , CYS A:154 , HIS A:68 , ETX A:600	RESIDUES THAT BIND THE CATALYTIC ZINC ION (ZN A 500)
10	ZND	AUTHOR	CYS B:38 , CYS B:154 , HIS B:68 , ETX B:600	RESIDUES THAT BIND THE CATALYTIC ZINC ION (ZN B 500)
11	ZNS	AUTHOR	CYS A:112 , GLU A:98 , CYS A:101 , CYS A:104	RESIDUES THAT BIND A STRUCTURAL ZINC ION (ZN A 400) IN THE CATALYTIC DOMAIN
12	ZNT	AUTHOR	CYS B:112 , GLU B:98 , CYS B:101 , CYS B:104	RESIDUES THAT BIND A STRUCTURAL ZINC ION (ZN B 400) IN THE CATALYTIC DOMAIN

(no "SS Bond" information available for 1R37)

Asymmetric Unit

No.	Residues
1	Leu A:62	-	Pro A:63
2	Leu B:62	-	Pro B:63

(no "SAP(SNP)/Variant" information available for 1R37)

Asymmetric Unit (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ADH_ZINC	PS00059	Zinc-containing alcohol dehydrogenases signature.	ADH_SULSO	67-81	2	A:67-81 B:67-81

Biological Unit 1 (1, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ADH_ZINC	PS00059	Zinc-containing alcohol dehydrogenases signature.	ADH_SULSO	67-81	4	A:67-81 B:67-81

(no "Exon" information available for 1R37)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:347
 aligned with ADH_SULSO | P39462 from UniProtKB/Swiss-Prot  Length:347

    Alignment length:347
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       
            ADH_SULSO     1 MRAVRLVEIGKPLSLQEIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVKLPVTLGHEIAGKIEEVGDEVVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDSPRWLGINFDGAYAEYVIVPHYKYMYKLRRLNAVEAAPLTCSGITTYRAVRKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVINASMQDPLAEIRRITESKGVDAVIDLNNSEKTLSVYPKALAKQGKYVMVGLFGADLHYHAPLITLSEIQFVGSLVGNQSDFLGIMRLAEAGKVKPMITKTMKLEEANEAIDNLENFKAIGRQVLIP 347
               SCOP domains d1r37a1 A:1-143,A:314-347 Alcohol dehydrogenase                                                                                                d1r37a2 A:144-313 Alcohol dehydrogenase                                                                                                                                   d1r37a1 A:1-143,A:314-347          SCOP domains
               CATH domains 1r37A01 A:1-158,A:296-347 Medium-chain alcohol dehydrogenases, catalytic domain                                                                               1r37A02 A:159-295 NAD(P)-binding Rossmann-like Domain                                                                                    1r37A01 A:1-158,A:296-347                            CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee.......eeee..........eeeeeeeeee.hhhhhhhhhee..ee..........ee...eeeeeeeee...........eeee..ee....hhhhhh.hhhhh...ee...........eeee.hhh.eee....hhhhhhhhhhhhhhhhhhhhhh......eeeee...hhhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhh..eeee....hhhhhhhhhh....eeeeee...hhhhhhhhhh.eeeeeeeee......eeeeehhhhhhhh.eeee....hhhhhhhhhhhhhh......eeeeehhhhhhhhhhhhhh.....eeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------ADH_ZINC       -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1r37 A   1 MRAVRLVEIGKPLSLQEIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVKLPVTLGHEIAGKIEEVGDEVVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDSPRWLGINFDGAYAEYVIVPHYKYMYKLRRLNAVEAAPLTCSGITTYRAVRKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVINASMQDPLAEIRRITESKGVDAVIDLNNSEKTLSVYPKALAKQGKYVMVGLFGADLHYHAPLITLSEIQFVGSLVGNQSDFLGIMRLAEAGKVKPMITKTMKLEEANEAIDNLENFKAIGRQVLIP 347
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340

Chain B from PDB  Type:PROTEIN  Length:347
 aligned with ADH_SULSO | P39462 from UniProtKB/Swiss-Prot  Length:347

    Alignment length:347
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       
            ADH_SULSO     1 MRAVRLVEIGKPLSLQEIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVKLPVTLGHEIAGKIEEVGDEVVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDSPRWLGINFDGAYAEYVIVPHYKYMYKLRRLNAVEAAPLTCSGITTYRAVRKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVINASMQDPLAEIRRITESKGVDAVIDLNNSEKTLSVYPKALAKQGKYVMVGLFGADLHYHAPLITLSEIQFVGSLVGNQSDFLGIMRLAEAGKVKPMITKTMKLEEANEAIDNLENFKAIGRQVLIP 347
               SCOP domains d1r37b1 B:1-143,B:314-347 Alcohol dehydrogenase                                                                                                d1r37b2 B:144-313 Alcohol dehydrogenase                                                                                                                                   d1r37b1 B:1-143,B:314-347          SCOP domains
               CATH domains 1r37B01 B:1-158,B:296-347 Medium-chain alcohol dehydrogenases, catalytic domain                                                                               1r37B02 B:159-295 NAD(P)-binding Rossmann-like Domain                                                                                    1r37B01 B:1-158,B:296-347                            CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee.......eeee..........eeeeeeeeee.hhhhhhhhhee..ee..........ee...eeeeeeeee...........eeee..ee....hhhhhh.hhhhh...ee...........eeee.hhh.eee....hhhhhhhhhhhhhhhhhhhhhh......eeeee...hhhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhh...eeee....hhhhhhhhhh....eeeeee...hhhhhhhhhh.eeeeeeeee......eeeeehhhhhhhh.eeee....hhhhhhhhhhhhhh......eeeeehhhhhhhhhhhhhh.....eeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------ADH_ZINC       -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1r37 B   1 MRAVRLVEIGKPLSLQEIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVKLPVTLGHEIAGKIEEVGDEVVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDSPRWLGINFDGAYAEYVIVPHYKYMYKLRRLNAVEAAPLTCSGITTYRAVRKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVINASMQDPLAEIRRITESKGVDAVIDLNNSEKTLSVYPKALAKQGKYVMVGLFGADLHYHAPLITLSEIQFVGSLVGNQSDFLGIMRLAEAGKVKPMITKTMKLEEANEAIDNLENFKAIGRQVLIP 347
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

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Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

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Class: All beta proteins (24004)

Fold: GroES-like (132)

Superfamily: GroES-like (130)

Family: Alcohol dehydrogenase-like, N-terminal domain (114)

Protein domain: Alcohol dehydrogenase (77)

Sulfolobus solfataricus [TaxId: 2287] (4)

1a	d1r37a1	A:1-143,A:314-347
1b	d1r37b1	B:1-143,B:314-347

Class: Alpha and beta proteins (a/b) (23833)

Fold: NAD(P)-binding Rossmann-fold domains (1604)

Superfamily: NAD(P)-binding Rossmann-fold domains (1604)

Family: Alcohol dehydrogenase-like, C-terminal domain (115)

Protein domain: Alcohol dehydrogenase (77)

Sulfolobus solfataricus [TaxId: 2287] (4)

2a	d1r37a2	A:144-313
2b	d1r37b2	B:144-313

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: Rossmann fold (7312)

Homologous Superfamily: NAD(P)-binding Rossmann-like Domain (1244)

Sulfolobus solfataricus. Organism_taxid: 2287. (6)

1a	1r37A02	A:159-295
1b	1r37B02	B:159-295

Architecture: Alpha-Beta Complex (3881)

Topology: Quinone Oxidoreductase; Chain A, domain 1 (131)

Homologous Superfamily: Medium-chain alcohol dehydrogenases, catalytic domain (131)

Sulfolobus solfataricus. Organism_taxid: 2287. (5)

2a	1r37A01	A:1-158,A:296-347
2b	1r37B01	B:1-158,B:296-347

(no "Pfam Domain" information available for 1R37)

Asymmetric Unit(hide GO term definitions)

Chain A,B (ADH_SULSO | P39462)

molecular function
	GO:0004022	alcohol dehydrogenase (NAD) activity	Catalysis of the reaction: an alcohol + NAD+ = an aldehyde or ketone + NADH + H+.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
	GO:0008270	zinc ion binding	Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

Asymmetric Unit
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	Cis Peptide Bonds
		Leu A:62 - Pro A:63	[ RasMol ]
		Leu B:62 - Pro B:63	[ RasMol ]

Biological Unit
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	1r37
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	ADH_SULSO \| P39462	:	1jvb 1nto 1nvg 3i4c

1jvb	SSADH APOFORM
1nto	SSADH N249Y MUTANT- MONOCLINIC FORM
1nvg	SSADH N249Y MUTANT- TETRAGONAL FORM

Description

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Ligands, Modified Residues, Ions (3, 8)

Sites (12, 12)

SS Bonds (0, 0)

Cis Peptide Bonds (2, 2)

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