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(-) Description

Title :  ALCOHOL DEHYDROGENASE FROM THE ARCHAEON SULFOLOBUS SOLFATARICUS
 
Authors :  L. Esposito, F. Sica, A. Zagari, L. Mazzarella
Date :  29 Aug 01  (Deposition) - 29 Aug 02  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.85
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (4x)
Keywords :  Archaeon, Zinc, Nad, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. Esposito, F. Sica, C. A. Raia, A. Giordano, M. Rossi, L. Mazzarella, A. Zagari
Crystal Structure Of The Alcohol Dehydrogenase From The Hyperthermophilic Archaeon Sulfolobus Solfataricus At 1. 85 A Resolution.
J. Mol. Biol. V. 318 463 2002
PubMed-ID: 12051852  |  Reference-DOI: 10.1016/S0022-2836(02)00088-8
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - NAD(H)-DEPENDENT ALCOHOL DEHYDROGENASE
    Chains: A
    EC Number: 1.1.1.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: RB791
    Expression System Taxid: 562
    Expression System Vector: PTRC99A
    Expression System Vector Type: PLASMID
    Fragment: APO-ENZYME FORM
    Gene: ADH
    Organism Scientific: SULFOLOBUS SOLFATARICUS
    Organism Taxid: 2287
    Other Details: APO-ENZYME FORM

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (4x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 10)

Asymmetric Unit (2, 10)
No.NameCountTypeFull Name
1MSE8Mod. Amino AcidSELENOMETHIONINE
2ZN2Ligand/IonZINC ION
Biological Unit 1 (1, 32)
No.NameCountTypeFull Name
1MSE32Mod. Amino AcidSELENOMETHIONINE
2ZN-1Ligand/IonZINC ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:98 , CYS A:101 , CYS A:104 , CYS A:112BINDING SITE FOR RESIDUE ZN A 400
2AC2SOFTWARECYS A:38 , HIS A:68 , GLU A:69 , CYS A:154BINDING SITE FOR RESIDUE ZN A 500
3ZNCAUTHORCYS A:38 , CYS A:154 , GLU A:69 , HIS A:68RESIDUES THAT BIND A STRUCTURAL ZINC ION (ZN A 400) IN THE CATALYTIC DOMAIN
4ZNSAUTHORCYS A:112 , GLU A:98 , CYS A:101 , CYS A:104RESIDUES THAT BIND THE CATALYTIC ZINC ION (ZN A 500)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1JVB)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Leu A:62 -Pro A:63

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1JVB)

(-) PROSITE Motifs  (1, 1)

Asymmetric Unit (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ADH_ZINCPS00059 Zinc-containing alcohol dehydrogenases signature.ADH_SULSO67-81  1A:67-81
Biological Unit 1 (1, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ADH_ZINCPS00059 Zinc-containing alcohol dehydrogenases signature.ADH_SULSO67-81  4A:67-81

(-) Exons   (0, 0)

(no "Exon" information available for 1JVB)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:347
 aligned with ADH_SULSO | P39462 from UniProtKB/Swiss-Prot  Length:347

    Alignment length:347
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       
            ADH_SULSO     1 MRAVRLVEIGKPLSLQEIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVKLPVTLGHEIAGKIEEVGDEVVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDSPRWLGINFDGAYAEYVIVPHYKYMYKLRRLNAVEAAPLTCSGITTYRAVRKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVINASMQDPLAEIRRITESKGVDAVIDLNNSEKTLSVYPKALAKQGKYVMVGLFGADLHYHAPLITLSEIQFVGSLVGNQSDFLGIMRLAEAGKVKPMITKTMKLEEANEAIDNLENFKAIGRQVLIP 347
               SCOP domains d1jvba1 A:1-143,A:314-347 Alcohol dehydrogenase                                                                                                d1jvba2 A:144-313 Alcohol dehydrogenase                                                                                                                                   d1jvba1 A:1-143,A:314-347          SCOP domains
               CATH domains -1jvbA01 A:2-154,A:296-347 Medium-chain alcohol dehydrogenases, catalytic domain                                                                          1jvbA02 A:155-295 NAD(P)-binding Rossmann-like Domain                                                                                        1jvbA01 A:2-154,A:296-347                            CATH domains
               Pfam domains ------------------------ADH_N-1jvbA01 A:25-141                                                                                               ----------------------------------------ADH_zinc_N-1jvbA02 A:182-311                                                                                                      ------------------------------------ Pfam domains
         Sec.struct. author .eeeee.......eeee..........eeeeeeeeee.hhhhhhh..ee..ee..........ee...eeeeeeeee...........eeee..ee....hhhhhh.hhhhh...ee...........eeee.hhh.eee....hhhhhhhhhhhhhhhhhhhhhh......eeeee...hhhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhh..eeee....hhhhhhhhhh....eeeeee...hhhhhhhhhh.eeeeeeeee..........hhhhhhhhh.eeee....hhhhhhhhhhhhhh.......eeeee..hhhhhhhhhhh.....eeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------ADH_ZINC       -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1jvb A   1 mRAVRLVEIGKPLSLQEIGVPKPKGPQVLIKVEAAGVCHSDVHmRQGRFGNLRIVEDLGVKLPVTLGHEIAGKIEEVGDEVVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDSPRWLGINFDGAYAEYVIVPHYKYmYKLRRLNAVEAAPLTCSGITTYRAVRKASLDPTKTLLVVGAGGGLGTmAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVINASMQDPLAEIRRITESKGVDAVIDLNNSEKTLSVYPKALAKQGKYVmVGLFGADLHYHAPLITLSEIQFVGSLVGNQSDFLGImRLAEAGKVKPmITKTmKLEEANEAIDNLENFKAIGRQVLIP 347
                            |       10        20        30        40   |    50        60        70        80        90       100       110       120       130       140       150       160       170       180     | 190       200       210       220       230       240       250       260       270       280       290       300     | 310      |320 |     330       340       
                            |                                         44-MSE                                                                                       138-MSE                                         186-MSE                                                                            269-MSE                              306-MSE    317-MSE|                         
                            1-MSE                                                                                                                                                                                                                                                                                                                          322-MSE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 2)

Asymmetric Unit
(-)
Class: All beta proteins (24004)
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (2, 2)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (2, 2)

Asymmetric Unit
(-)
Clan: GroES (70)
(-)
Clan: NADP_Rossmann (1239)

(-) Gene Ontology  (5, 5)

Asymmetric Unit(hide GO term definitions)
Chain A   (ADH_SULSO | P39462)
molecular function
    GO:0004022    alcohol dehydrogenase (NAD) activity    Catalysis of the reaction: an alcohol + NAD+ = an aldehyde or ketone + NADH + H+.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0008270    zinc ion binding    Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

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  1.1.1.1
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ADH_SULSO | P39462: 1nto 1nvg 1r37 3i4c

(-) Related Entries Specified in the PDB File

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