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1R37
Asym. Unit
Info
Asym.Unit (119 KB)
Biol.Unit 1 (224 KB)
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(1)
Title
:
ALCOHOL DEHYDROGENASE FROM SULFOLOBUS SOLFATARICUS COMPLEXED WITH NAD(H) AND 2-ETHOXYETHANOL
Authors
:
L. Esposito, I. Bruno, F. Sica, C. A. Raia, A. Giordano, M. Rossi, L. Mazzarella, A. Zagari
Date
:
30 Sep 03 (Deposition) - 10 Feb 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (2x)
Keywords
:
Archaeon, Zinc, Nad(H) Dependent, Holoform, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. Esposito, I. Bruno, F. Sica, C. A. Raia, A. Giordano, M. Rossi, L. Mazzarella, A. Zagari
Crystal Structure Of A Ternary Complex Of The Alcohol Dehydrogenase From Sulfolobus Solfataricus
Biochemistry V. 42 14397 2003
(for further references see the
PDB file header
)
[
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Hetero Components
(3, 8)
Info
All Hetero Components
1a: 2-ETHOXYETHANOL (ETXa)
1b: 2-ETHOXYETHANOL (ETXb)
2a: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADa)
2b: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADb)
3a: ZINC ION (ZNa)
3b: ZINC ION (ZNb)
3c: ZINC ION (ZNc)
3d: ZINC ION (ZNd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ETX
2
Ligand/Ion
2-ETHOXYETHANOL
2
NAD
2
Ligand/Ion
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
3
ZN
4
Ligand/Ion
ZINC ION
[
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]
Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: ZNC (AUTHOR)
10: ZND (AUTHOR)
11: ZNS (AUTHOR)
12: ZNT (AUTHOR)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
CYS A:38 , HIS A:68 , CYS A:154 , NAD A:403 , ETX A:600
BINDING SITE FOR RESIDUE ZN A 500
02
AC2
SOFTWARE
GLU A:98 , CYS A:101 , CYS A:104 , CYS A:112
BINDING SITE FOR RESIDUE ZN A 400
03
AC3
SOFTWARE
CYS B:38 , HIS B:68 , CYS B:154 , NAD B:403 , ETX B:600
BINDING SITE FOR RESIDUE ZN B 500
04
AC4
SOFTWARE
GLU B:98 , CYS B:101 , CYS B:104 , CYS B:112
BINDING SITE FOR RESIDUE ZN B 400
05
AC5
SOFTWARE
CYS A:38 , HIS A:39 , SER A:40 , HIS A:43 , CYS A:154 , THR A:158 , GLY A:178 , GLY A:180 , GLY A:181 , GLY A:182 , LEU A:183 , ASP A:203 , VAL A:204 , ARG A:205 , LEU A:247 , ASN A:248 , VAL A:270 , GLY A:271 , LEU A:272 , PHE A:273 , SER A:294 , LEU A:295 , VAL A:296 , LEU A:334 , ARG A:342 , ZN A:500 , ETX A:600 , HOH A:605 , HOH A:613 , HOH A:650 , HOH A:664 , HOH A:704 , THR B:285
BINDING SITE FOR RESIDUE NAD A 403
06
AC6
SOFTWARE
SER A:40 , PHE A:49 , HIS A:68 , TRP A:95 , TRP A:117 , CYS A:154 , NAD A:403 , ZN A:500
BINDING SITE FOR RESIDUE ETX A 600
07
AC7
SOFTWARE
THR A:285 , CYS B:38 , HIS B:39 , SER B:40 , HIS B:43 , CYS B:154 , THR B:158 , GLY B:178 , GLY B:180 , GLY B:181 , GLY B:182 , LEU B:183 , ASP B:203 , VAL B:204 , ARG B:205 , LEU B:247 , ASN B:248 , VAL B:270 , GLY B:271 , LEU B:272 , PHE B:273 , SER B:294 , LEU B:295 , VAL B:296 , LEU B:334 , ARG B:342 , ZN B:500 , ETX B:600 , HOH B:606 , HOH B:612 , HOH B:617 , HOH B:646 , HOH B:654
BINDING SITE FOR RESIDUE NAD B 403
08
AC8
SOFTWARE
SER B:40 , PHE B:49 , HIS B:68 , TRP B:95 , TRP B:117 , CYS B:154 , NAD B:403 , ZN B:500
BINDING SITE FOR RESIDUE ETX B 600
09
ZNC
AUTHOR
CYS A:38 , CYS A:154 , HIS A:68 , ETX A:600
RESIDUES THAT BIND THE CATALYTIC ZINC ION (ZN A 500)
10
ZND
AUTHOR
CYS B:38 , CYS B:154 , HIS B:68 , ETX B:600
RESIDUES THAT BIND THE CATALYTIC ZINC ION (ZN B 500)
11
ZNS
AUTHOR
CYS A:112 , GLU A:98 , CYS A:101 , CYS A:104
RESIDUES THAT BIND A STRUCTURAL ZINC ION (ZN A 400) IN THE CATALYTIC DOMAIN
12
ZNT
AUTHOR
CYS B:112 , GLU B:98 , CYS B:101 , CYS B:104
RESIDUES THAT BIND A STRUCTURAL ZINC ION (ZN B 400) IN THE CATALYTIC DOMAIN
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: ADH_ZINC (A:67-81,B:67-81)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ADH_ZINC
PS00059
Zinc-containing alcohol dehydrogenases signature.
ADH_SULSO
67-81
2
A:67-81
B:67-81
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1r37a1 (A:1-143,A:314-347)
1b: SCOP_d1r37b1 (B:1-143,B:314-347)
2a: SCOP_d1r37a2 (A:144-313)
2b: SCOP_d1r37b2 (B:144-313)
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Classes
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)
(
)
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(
)
Superfamilies
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(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
GroES-like
(132)
Superfamily
:
GroES-like
(130)
Family
:
Alcohol dehydrogenase-like, N-terminal domain
(114)
Protein domain
:
Alcohol dehydrogenase
(77)
Sulfolobus solfataricus [TaxId: 2287]
(4)
1a
d1r37a1
A:1-143,A:314-347
1b
d1r37b1
B:1-143,B:314-347
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
Alcohol dehydrogenase-like, C-terminal domain
(115)
Protein domain
:
Alcohol dehydrogenase
(77)
Sulfolobus solfataricus [TaxId: 2287]
(4)
2a
d1r37a2
A:144-313
2b
d1r37b2
B:144-313
[
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1r37A02 (A:159-295)
1b: CATH_1r37B02 (B:159-295)
2a: CATH_1r37A01 (A:1-158,A:296-347)
2b: CATH_1r37B01 (B:1-158,B:296-347)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
NAD(P)-binding Rossmann-like Domain
(1244)
Sulfolobus solfataricus. Organism_taxid: 2287.
(6)
1a
1r37A02
A:159-295
1b
1r37B02
B:159-295
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Quinone Oxidoreductase; Chain A, domain 1
(131)
Homologous Superfamily
:
Medium-chain alcohol dehydrogenases, catalytic domain
(131)
Sulfolobus solfataricus. Organism_taxid: 2287.
(5)
2a
1r37A01
A:1-158,A:296-347
2b
1r37B01
B:1-158,B:296-347
[
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Pfam Domains
(0, 0)
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all PFAM domains
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Chain A
Chain B
Asymmetric Unit 1
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (119 KB)
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