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1QFL
Asym. Unit
Info
Asym.Unit (254 KB)
Biol.Unit 1 (247 KB)
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(1)
Title
:
BIOSYNTHETIC THIOLASE FROM ZOOGLOEA RAMIGERA IN COMPLEX WITH A REACTION INTERMEDIATE.
Authors
:
Y. Modis, R. K. Wierenga
Date
:
12 Apr 99 (Deposition) - 19 Apr 00 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.92
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Thiolase, Coa, Tetramerization Motif, Covalent Intermediate, Acetyl-Cysteine, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Modis, R. K. Wierenga
A Biosynthetic Thiolase In Complex With A Reaction Intermediate: The Crystal Structure Provides New Insights Into The Catalytic Mechanism.
Structure Fold. Des. V. 7 1279 1999
(for further references see the
PDB file header
)
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Hetero Components
(3, 14)
Info
All Hetero Components
1a: COENZYME A (COAa)
1b: COENZYME A (COAb)
1c: COENZYME A (COAc)
1d: COENZYME A (COAd)
2a: S-ACETYL-CYSTEINE (SCYa)
2b: S-ACETYL-CYSTEINE (SCYb)
2c: S-ACETYL-CYSTEINE (SCYc)
2d: S-ACETYL-CYSTEINE (SCYd)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
COA
4
Ligand/Ion
COENZYME A
2
SCY
4
Mod. Amino Acid
S-ACETYL-CYSTEINE
3
SO4
6
Ligand/Ion
SULFATE ION
[
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]
Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AS1 (AUTHOR)
11: AS2 (AUTHOR)
12: AS3 (AUTHOR)
13: AS4 (AUTHOR)
14: BC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LYS B:298 , ARG B:302 , HOH B:892 , HOH B:938
BINDING SITE FOR RESIDUE SO4 B 719
02
AC2
SOFTWARE
SER A:260 , ALA A:262 , GLU A:263 , ARG A:266 , HOH A:900
BINDING SITE FOR RESIDUE SO4 A 720
03
AC3
SOFTWARE
SER B:260 , GLU B:263 , ARG B:266 , HOH B:900
BINDING SITE FOR RESIDUE SO4 B 721
04
AC4
SOFTWARE
ARG A:302 , HOH A:875 , HOH A:1000
BINDING SITE FOR RESIDUE SO4 A 722
05
AC5
SOFTWARE
ARG A:41 , ILE A:199 , VAL A:200 , PRO A:201 , HOH A:878 , HOH A:975 , HOH A:1009
BINDING SITE FOR RESIDUE SO4 A 723
06
AC6
SOFTWARE
ARG B:41 , ILE B:199 , VAL B:200 , PRO B:201 , HOH B:893 , HOH B:960 , HOH B:963
BINDING SITE FOR RESIDUE SO4 B 724
07
AC7
SOFTWARE
SCY A:89 , LEU A:148 , HIS A:156 , MET A:157 , ARG A:220 , SER A:227 , LEU A:231 , ALA A:243 , GLY A:244 , SER A:247 , MET A:288 , PHE A:319 , HIS A:348 , HOH A:755 , HOH A:788 , HOH A:811 , HOH A:817 , HOH A:845 , HOH A:886 , HOH A:889 , HOH A:948 , MET D:134
BINDING SITE FOR RESIDUE COA A 393
08
AC8
SOFTWARE
SCY B:89 , LEU B:148 , HIS B:156 , MET B:157 , ARG B:220 , SER B:227 , MET B:228 , PHE B:235 , ALA B:243 , GLY B:244 , SER B:247 , MET B:288 , PHE B:319 , HIS B:348 , HOH B:740 , HOH B:768 , HOH B:773 , HOH B:807 , HOH B:931 , MET C:134
BINDING SITE FOR RESIDUE COA B 393
09
AC9
SOFTWARE
SCY C:89 , LEU C:148 , HIS C:156 , MET C:157 , ARG C:220 , MET C:228 , PHE C:235 , ALA C:243 , GLY C:244 , SER C:247 , LEU C:249 , MET C:288 , PHE C:319 , HIS C:348
BINDING SITE FOR RESIDUE COA C 393
10
AS1
AUTHOR
SCY A:89 , CYS A:378 , HIS A:348 , COA A:393
CATALYTIC SITE WITH REACTION INTERMEDIATE CONSISTING OF ACETYLATED ENZYME AND COA
11
AS2
AUTHOR
SCY B:89 , CYS B:378 , HIS B:348 , COA B:393
CATALYTIC SITE WITH REACTION INTERMEDIATE CONSISTING OF ACETYLATED ENZYME AND COA
12
AS3
AUTHOR
SCY C:89 , CYS C:378 , HIS C:348 , COA C:393
CATALYTIC SITE WITH REACTION INTERMEDIATE CONSISTING OF ACETYLATED ENZYME AND COA
13
AS4
AUTHOR
SCY D:89 , CYS D:378 , HIS D:348 , COA D:393
CATALYTIC SITE WITH REACTION INTERMEDIATE CONSISTING OF ACETYLATED ENZYME AND COA
14
BC1
SOFTWARE
SCY D:89 , LEU D:148 , HIS D:156 , MET D:157 , ARG D:220 , SER D:227 , MET D:228 , ALA D:243 , GLY D:244 , SER D:247 , MET D:288 , PHE D:319 , HIS D:348 , HOH D:432
BINDING SITE FOR RESIDUE COA D 393
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(3, 12)
Info
All PROSITE Patterns/Profiles
1: THIOLASE_1 (A:85-103,B:85-103,C:85-103,D:85-10...)
2: THIOLASE_2 (A:338-354,B:338-354,C:338-354,D:33...)
3: THIOLASE_3 (A:373-386,B:373-386,C:373-386,D:37...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
THIOLASE_1
PS00098
Thiolases acyl-enzyme intermediate signature.
THIL_ZOORA
85-103
4
A:85-103
B:85-103
C:85-103
D:85-103
2
THIOLASE_2
PS00737
Thiolases signature 2.
THIL_ZOORA
338-354
4
A:338-354
B:338-354
C:338-354
D:338-354
3
THIOLASE_3
PS00099
Thiolases active site.
THIL_ZOORA
373-386
4
A:373-386
B:373-386
C:373-386
D:373-386
[
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d1qfla1 (A:4-268)
1b: SCOP_d1qfla2 (A:269-392)
1c: SCOP_d1qflb1 (B:4-268)
1d: SCOP_d1qflb2 (B:269-392)
1e: SCOP_d1qflc1 (C:4-268)
1f: SCOP_d1qflc2 (C:269-392)
1g: SCOP_d1qfld1 (D:4-268)
1h: SCOP_d1qfld2 (D:269-392)
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Thiolase-like
(231)
Superfamily
:
Thiolase-like
(231)
Family
:
Thiolase-related
(67)
Protein domain
:
Biosynthetic thiolase
(16)
Zoogloea ramigera [TaxId: 350]
(16)
1a
d1qfla1
A:4-268
1b
d1qfla2
A:269-392
1c
d1qflb1
B:4-268
1d
d1qflb2
B:269-392
1e
d1qflc1
C:4-268
1f
d1qflc2
C:269-392
1g
d1qfld1
D:4-268
1h
d1qfld2
D:269-392
[
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CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_1qflA01 (A:4-124,A:194-275)
1b: CATH_1qflA02 (A:152-193,A:276-389)
1c: CATH_1qflB02 (B:152-193,B:276-389)
1d: CATH_1qflC02 (C:152-193,C:276-389)
1e: CATH_1qflD02 (D:152-193,D:276-389)
1f: CATH_1qflB01 (B:4-124,B:194-275)
1g: CATH_1qflC01 (C:4-124,C:194-275)
1h: CATH_1qflD01 (D:4-124,D:194-275)
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Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Peroxisomal Thiolase; Chain A, domain 1
(130)
Homologous Superfamily
:
[code=3.40.47.10, no name defined]
(130)
Zoogloea ramigera. Organism_taxid: 350.
(19)
1a
1qflA01
A:4-124,A:194-275
1b
1qflA02
A:152-193,A:276-389
1c
1qflB02
B:152-193,B:276-389
1d
1qflC02
C:152-193,C:276-389
1e
1qflD02
D:152-193,D:276-389
1f
1qflB01
B:4-124,B:194-275
1g
1qflC01
C:4-124,C:194-275
1h
1qflD01
D:4-124,D:194-275
[
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]
Pfam Domains
(2, 8)
Info
all PFAM domains
1a: PFAM_Thiolase_C_1qflD01 (D:269-391)
1b: PFAM_Thiolase_C_1qflD02 (D:269-391)
1c: PFAM_Thiolase_C_1qflD03 (D:269-391)
1d: PFAM_Thiolase_C_1qflD04 (D:269-391)
2a: PFAM_Thiolase_N_1qflD05 (D:11-262)
2b: PFAM_Thiolase_N_1qflD06 (D:11-262)
2c: PFAM_Thiolase_N_1qflD07 (D:11-262)
2d: PFAM_Thiolase_N_1qflD08 (D:11-262)
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(
)
(
)
Clan
:
Thiolase
(72)
Family
:
Thiolase_C
(23)
Zoogloea ramigera
(15)
1a
Thiolase_C-1qflD01
D:269-391
1b
Thiolase_C-1qflD02
D:269-391
1c
Thiolase_C-1qflD03
D:269-391
1d
Thiolase_C-1qflD04
D:269-391
Family
:
Thiolase_N
(23)
Zoogloea ramigera
(15)
2a
Thiolase_N-1qflD05
D:11-262
2b
Thiolase_N-1qflD06
D:11-262
2c
Thiolase_N-1qflD07
D:11-262
2d
Thiolase_N-1qflD08
D:11-262
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