1PZN - JenaLib

Biol.Unit 1 - manually (Jmol Viewer)

Asym.Unit - manually (Jmol Viewer)

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Title :   RAD51 (RADA)

Authors :   D. S. Shin, J. A. Tainer

Date :   12 Jul 03 (Deposition) - 09 Sep 03 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.85

Chains :   Asym. Unit : A,B,C,D,E,F,G
Biol. Unit 1: A,B,C,D,E,F,G  (2x)
Biol. Unit 2: A,B,C,D,E,F,G  (1x)

Keywords :   Heptameric Ring; Heptamer; Ring; Oligomer; Rad51 Polymerization Motif; Helix-Hairpin-Helix; Dna Repair; Dna Recombination; Atpase; Homologous Recombination, Recombination (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   D. S. Shin, L. Pellegrini, D. S. Daniels, B. Yelent, L. Craig, D. Bates, D. S. Yu, M. K. Shivji, C. Hitomi, A. S. Arvai, N. Volkmann, H. Tsuruta, T. L. Blundell, A. R. Venkitaraman, J. A. Tainer
Full-Length Archaeal Rad51 Structure And Mutants: Mechanism For Rad51 Assembly And Control By Brca2
Embo J. V. 22 4566 2003
PubMed-ID: 12941707 | Reference-DOI: 10.1093/EMBOJ/CDG429

Molecule 1 - DNA REPAIR AND RECOMBINATION PROTEIN RAD51
	Chains	:	A, B, C, D, E, F, G
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Organism Scientific	:	PYROCOCCUS FURIOSUS
	Organism Taxid	:	2261
	Synonym	:	RAD51; RADA; RECOMBINASE RADA

		1	2	3	4	5	6	7
Asymmetric Unit	:	A	B	C	D	E	F	G
Biological Unit 1 (2x)	:	A	B	C	D	E	F	G
Biological Unit 2 (1x)	:	A	B	C	D	E	F	G

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (5, 50)

No.	Name	Count	Type	Full Name
1	GOL	9	Ligand/Ion	GLYCEROL
2	IMD	9	Ligand/Ion	IMIDAZOLE
3	MPD	4	Ligand/Ion	(4S)-2-METHYL-2,4-PENTANEDIOL
4	MSE	21	Mod. Amino Acid	SELENOMETHIONINE
5	SO4	7	Ligand/Ion	SULFATE ION

Biological Unit 1 (5, 100)

No.	Name	Count	Type	Full Name
1	GOL	18	Ligand/Ion	GLYCEROL
2	IMD	18	Ligand/Ion	IMIDAZOLE
3	MPD	8	Ligand/Ion	(4S)-2-METHYL-2,4-PENTANEDIOL
4	MSE	42	Mod. Amino Acid	SELENOMETHIONINE
5	SO4	14	Ligand/Ion	SULFATE ION

Biological Unit 2 (5, 50)

No.	Name	Count	Type	Full Name
1	GOL	9	Ligand/Ion	GLYCEROL
2	IMD	9	Ligand/Ion	IMIDAZOLE
3	MPD	4	Ligand/Ion	(4S)-2-METHYL-2,4-PENTANEDIOL
4	MSE	21	Mod. Amino Acid	SELENOMETHIONINE
5	SO4	7	Ligand/Ion	SULFATE ION

Asymmetric Unit (29, 29)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	GLY A:141 , SER A:142 , GLY A:143 , LYS A:144 , THR A:145 , HOH A:406 , HOH A:421	BINDING SITE FOR RESIDUE SO4 A 350
02	AC2	SOFTWARE	GLU B:139 , PHE B:140 , GLY B:141 , SER B:142 , GLY B:143 , LYS B:144 , THR B:145	BINDING SITE FOR RESIDUE SO4 B 351
03	AC3	SOFTWARE	GLU C:139 , GLY C:141 , SER C:142 , GLY C:143 , LYS C:144 , THR C:145	BINDING SITE FOR RESIDUE SO4 C 352
04	AC4	SOFTWARE	GLU D:139 , GLY D:141 , SER D:142 , GLY D:143 , LYS D:144 , THR D:145	BINDING SITE FOR RESIDUE SO4 D 353
05	AC5	SOFTWARE	GLU E:139 , PHE E:140 , GLY E:141 , SER E:142 , GLY E:143 , LYS E:144 , THR E:145	BINDING SITE FOR RESIDUE SO4 E 354
06	AC6	SOFTWARE	GLU F:139 , PHE F:140 , GLY F:141 , SER F:142 , GLY F:143 , LYS F:144 , THR F:145	BINDING SITE FOR RESIDUE SO4 F 355
07	AC7	SOFTWARE	GLU G:139 , GLY G:141 , SER G:142 , GLY G:143 , LYS G:144 , THR G:145 , HOH G:401	BINDING SITE FOR RESIDUE SO4 G 356
08	AC8	SOFTWARE	ARG A:99 , TYR B:201	BINDING SITE FOR RESIDUE IMD A 357
09	AC9	SOFTWARE	GLY A:321 , ARG A:323 , LYS F:319 , GLY F:320	BINDING SITE FOR RESIDUE IMD A 358
10	BC1	SOFTWARE	ARG A:251 , GLY B:250 , ARG B:251 , GLY B:252 , ALA B:253 , LEU B:254	BINDING SITE FOR RESIDUE IMD B 359
11	BC2	SOFTWARE	LYS B:319 , GLY B:320 , GLY B:321 , ARG E:323	BINDING SITE FOR RESIDUE IMD B 360
12	BC3	SOFTWARE	LYS A:319 , GLY A:320 , GLY F:321 , ARG F:323	BINDING SITE FOR RESIDUE IMD A 361
13	BC4	SOFTWARE	ARG B:99 , TYR C:201 , HOH C:443	BINDING SITE FOR RESIDUE IMD C 362
14	BC5	SOFTWARE	ARG E:99 , TYR F:201 , LYS F:221 , GLU F:224	BINDING SITE FOR RESIDUE IMD F 363
15	BC6	SOFTWARE	TYR A:201 , ARG G:99	BINDING SITE FOR RESIDUE IMD A 364
16	BC7	SOFTWARE	GLY B:321 , ARG B:323 , LYS E:319	BINDING SITE FOR RESIDUE IMD B 365
17	BC8	SOFTWARE	HIS F:199 , ARG F:230	BINDING SITE FOR RESIDUE GOL F 366
18	BC9	SOFTWARE	ARG A:99 , LYS B:198	BINDING SITE FOR RESIDUE GOL B 367
19	CC1	SOFTWARE	ARG C:99 , LYS D:198	BINDING SITE FOR RESIDUE GOL C 368
20	CC2	SOFTWARE	THR D:96 , ALA E:203	BINDING SITE FOR RESIDUE GOL D 369
21	CC3	SOFTWARE	LYS C:198	BINDING SITE FOR RESIDUE GOL C 370
22	CC4	SOFTWARE	ARG D:99 , LYS E:198	BINDING SITE FOR RESIDUE GOL E 371
23	CC5	SOFTWARE	ARG E:99 , LYS F:198	BINDING SITE FOR RESIDUE GOL F 372
24	CC6	SOFTWARE	ARG F:99 , LYS G:198	BINDING SITE FOR RESIDUE GOL F 373
25	CC7	SOFTWARE	LYS A:198	BINDING SITE FOR RESIDUE GOL A 374
26	CC8	SOFTWARE	ALA A:61 , LYS A:263 , ALA A:266 , ASP A:267 , ASN B:207	BINDING SITE FOR RESIDUE MPD B 375
27	CC9	SOFTWARE	ARG D:99 , TYR E:201 , LYS E:221 , GLU E:224	BINDING SITE FOR RESIDUE MPD E 376
28	DC1	SOFTWARE	ARG G:183 , GLN G:187	BINDING SITE FOR RESIDUE MPD G 377
29	DC2	SOFTWARE	GLN G:146 , ILE G:342	BINDING SITE FOR RESIDUE MPD G 378

(no "SS Bond" information available for 1PZN)

Asymmetric Unit

No.	Residues
1	Asp A:238	-	Ser A:239
2	Asp B:238	-	Ser B:239
3	Asp C:238	-	Ser C:239
4	Asp D:238	-	Ser D:239
5	Asp E:238	-	Ser E:239
6	Asp F:238	-	Ser F:239
7	Asp G:238	-	Ser G:239

(no "SAP(SNP)/Variant" information available for 1PZN)

Asymmetric Unit (2, 14)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	RECA_2	PS50162	RecA family profile 1.	RADA_PYRFU	109-285	7	A:109-285 B:109-285 C:109-285 D:109-285 E:109-285 F:109-285 G:109-285
2	RECA_3	PS50163	RecA family profile 2.	RADA_PYRFU	290-349	7	A:302-349 B:302-349 C:302-349 D:302-349 E:302-349 F:302-349 G:303-349

Biological Unit 1 (2, 28)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	RECA_2	PS50162	RecA family profile 1.	RADA_PYRFU	109-285	14	A:109-285 B:109-285 C:109-285 D:109-285 E:109-285 F:109-285 G:109-285
2	RECA_3	PS50163	RecA family profile 2.	RADA_PYRFU	290-349	14	A:302-349 B:302-349 C:302-349 D:302-349 E:302-349 F:302-349 G:303-349

Biological Unit 2 (2, 14)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	RECA_2	PS50162	RecA family profile 1.	RADA_PYRFU	109-285	7	A:109-285 B:109-285 C:109-285 D:109-285 E:109-285 F:109-285 G:109-285
2	RECA_3	PS50163	RecA family profile 2.	RADA_PYRFU	290-349	7	A:302-349 B:302-349 C:302-349 D:302-349 E:302-349 F:302-349 G:303-349

(no "Exon" information available for 1PZN)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:300
 aligned with RADA_PYRFU | O74036 from UniProtKB/Swiss-Prot  Length:349

    Alignment length:315
                                    44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344     
           RADA_PYRFU    35 RSIEDLPGVGPATAEKLREAGYDTLEAIAVASPIELKEVAGISEGTALKIIQAARKAANLGTFMRADEYLKKRATIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSATLRVYLRKGKGGKRIARLIDAPHLPEGEAVFSITEKGIED 349
               SCOP domains d1pzna1 A:35-95 DNA repair protein Rad51, N-terminal domain  d1pzna2 A:96-349 DNA repair protein Rad51, catalytic domain                                                                                                                                                                                                    SCOP domains
               CATH domains 1pznA01 A:35-100 5' to 3' exonuclease, C-terminal subdomain       1pznA02 A:101-349 P-loop containing nucleotide triphosphate hydrolases                                                                                                                                                                                    CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhhhhhh....hhhhhhh.hhhhhhhhhh.hhhhhhhhhhhhhhhh.....eehhhhhhhhhh..ee...hhhhhhhhh..ee..eeeeeee....hhhhhhhhhhhhhhhhhhhh....eeeeee.....hhhhhhhhhhh...hhhhhh..eeeee..hhhhhhhhhhhhhhhhhhh......eeeeeee....hhhhhh....hhhhhhhhhhhhhhhhhhhhhhh..eeeeeee..---------------.........eeeeeee....eeeeee.........eeeeeee..eee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------RECA_2  PDB: A:109-285 UniProt: 109-285                                                                                                                                          ----RECA_3  PDB: A:302-349 UniProt: 290-349                      PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1pzn A  35 RSIEDLPGVGPATAEKLREAGYDTLEAIAVASPIELKEVAGISEGTALKIIQAARKAANLGTFmRADEYLKKRATIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVmVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARAFNSNHQmLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQ---------------GHILAHSATLRVYLRKGKGGKRIARLIDAPHLPEGEAVFSITEKGIED 349
                                    44        54        64        74        84        94   |   104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284 |       -       304       314       324       334       344     
                                                                                          98-MSE                                                 154-MSE                                                   212-MSE                                                                   286             302

Chain B from PDB  Type:PROTEIN  Length:239
 aligned with RADA_PYRFU | O74036 from UniProtKB/Swiss-Prot  Length:349

    Alignment length:254
                                   105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345    
           RADA_PYRFU    96 TFMRADEYLKKRATIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSATLRVYLRKGKGGKRIARLIDAPHLPEGEAVFSITEKGIED 349
               SCOP domains d1pznb1 B:96-349 DNA repair protein Rad51, catalytic domain                                                                                                                                                                                                    SCOP domains
               CATH domains 1pznB00 B:96-349 P-loop containing nucleotide triphosphate hydrolases                                                                                                                                                                                          CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhh....ee...hhhhhhhh...ee..eeeeeee....hhhhhhhhhhhhhhhhhhhh....eeeeee.....hhhhhhhhhhh...hhhhhh..eeeee..hhhhhhhhhhhhhhhhhhhhh....eeeeeee....hhhhhh...hhhhhhhhhhhhhhhhhhhhhhhh..eeeeeee..---------------.........eeeeeeee...eeeeee..........eeeeee..eee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------RECA_2  PDB: B:109-285 UniProt: 109-285                                                                                                                                          ----RECA_3  PDB: B:302-349 UniProt: 290-349                      PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1pzn B  96 TFmRADEYLKKRATIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVmVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARAFNSNHQmLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQ---------------GHILAHSATLRVYLRKGKGGKRIARLIDAPHLPEGEAVFSITEKGIED 349
                              |    105       115       125       135       145       155       165       175       185       195       205      |215       225       235       245       255       265       275       285|        -      |305       315       325       335       345    
                             98-MSE                                                 154-MSE                                                   212-MSE                                                                   286             302

Chain C from PDB  Type:PROTEIN  Length:239
 aligned with RADA_PYRFU | O74036 from UniProtKB/Swiss-Prot  Length:349

    Alignment length:254
                                   105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345    
           RADA_PYRFU    96 TFMRADEYLKKRATIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSATLRVYLRKGKGGKRIARLIDAPHLPEGEAVFSITEKGIED 349
               SCOP domains d1pznc1 C:96-349 DNA repair protein Rad51, catalytic domain                                                                                                                                                                                                    SCOP domains
               CATH domains 1pznC00 C:96-349 P-loop containing nucleotide triphosphate hydrolases                                                                                                                                                                                          CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eehhhhhhhhhh..ee...hhhhhhhh...ee..eeeeeee....hhhhhhhhhhhhhhhhhhhh....eeeeee.....hhhhhhhhhhhh..hhhhhh..eeeee..hhhhhhhhhhhhhhhhhhhhhh...eeeeeee....hhhhhh....hhhhhhhhhhhhhhhhhhhhhhh..eeeeeee..---------------.........eeeeeee....eeeeee.........eeeeeee..eee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------RECA_2  PDB: C:109-285 UniProt: 109-285                                                                                                                                          ----RECA_3  PDB: C:302-349 UniProt: 290-349                      PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1pzn C  96 TFmRADEYLKKRATIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVmVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARAFNSNHQmLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQ---------------GHILAHSATLRVYLRKGKGGKRIARLIDAPHLPEGEAVFSITEKGIED 349
                              |    105       115       125       135       145       155       165       175       185       195       205      |215       225       235       245       255       265       275       285|        -      |305       315       325       335       345    
                             98-MSE                                                 154-MSE                                                   212-MSE                                                                   286             302

Chain D from PDB  Type:PROTEIN  Length:239
 aligned with RADA_PYRFU | O74036 from UniProtKB/Swiss-Prot  Length:349

    Alignment length:254
                                   105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345    
           RADA_PYRFU    96 TFMRADEYLKKRATIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSATLRVYLRKGKGGKRIARLIDAPHLPEGEAVFSITEKGIED 349
               SCOP domains d1pznd1 D:96-349 DNA repair protein Rad51, catalytic domain                                                                                                                                                                                                    SCOP domains
               CATH domains 1pznD00 D:96-349 P-loop containing nucleotide triphosphate hydrolases                                                                                                                                                                                          CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eehhhhhhhhhh..ee...hhhhhhhh...ee..eeeeeee....hhhhhhhhhhhhhhhhhhhh....eeeeee.....hhhhhhhhhhhh..hhhhhh..eeeee..hhhhhhhhhhhhhhhhhhhhhh...eeeeeee....hhhhhh....hhhhhhhhhhhhhhhhhhhhhhh..eeeeeee..---------------.........eeeeee.......eeee.........eee..ee..ee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------RECA_2  PDB: D:109-285 UniProt: 109-285                                                                                                                                          ----RECA_3  PDB: D:302-349 UniProt: 290-349                      PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1pzn D  96 TFmRADEYLKKRATIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVmVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARAFNSNHQmLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQ---------------GHILAHSATLRVYLRKGKGGKRIARLIDAPHLPEGEAVFSITEKGIED 349
                              |    105       115       125       135       145       155       165       175       185       195       205      |215       225       235       245       255       265       275       285|        -      |305       315       325       335       345    
                             98-MSE                                                 154-MSE                                                   212-MSE                                                                   286             302

Chain E from PDB  Type:PROTEIN  Length:239
 aligned with RADA_PYRFU | O74036 from UniProtKB/Swiss-Prot  Length:349

    Alignment length:254
                                   105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345    
           RADA_PYRFU    96 TFMRADEYLKKRATIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSATLRVYLRKGKGGKRIARLIDAPHLPEGEAVFSITEKGIED 349
               SCOP domains d1pzne1 E:96-349 DNA repair protein Rad51, catalytic domain                                                                                                                                                                                                    SCOP domains
               CATH domains 1pznE00 E:96-349 P-loop containing nucleotide triphosphate hydrolases                                                                                                                                                                                          CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eehhhhhhhhhh..ee...hhhhhhhh...ee..eeeeeee....hhhhhhhhhhhhh...........eeeeee.....hhhhhhhhhhh...hhhhhh..eeeee..hhhhhhhhhhhhhhhhhhhh.....eeeeeee....hhhhhh....hhhhhhhhhhhhhhhhhhhhhhh..eeeeeee..---------------.........eeeeeee.....eeeee.........eeeeeee..eee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------RECA_2  PDB: E:109-285 UniProt: 109-285                                                                                                                                          ----RECA_3  PDB: E:302-349 UniProt: 290-349                      PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1pzn E  96 TFmRADEYLKKRATIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVmVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARAFNSNHQmLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQ---------------GHILAHSATLRVYLRKGKGGKRIARLIDAPHLPEGEAVFSITEKGIED 349
                              |    105       115       125       135       145       155       165       175       185       195       205      |215       225       235       245       255       265       275       285|        -      |305       315       325       335       345    
                             98-MSE                                                 154-MSE                                                   212-MSE                                                                   286             302

Chain F from PDB  Type:PROTEIN  Length:239
 aligned with RADA_PYRFU | O74036 from UniProtKB/Swiss-Prot  Length:349

    Alignment length:254
                                   105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345    
           RADA_PYRFU    96 TFMRADEYLKKRATIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSATLRVYLRKGKGGKRIARLIDAPHLPEGEAVFSITEKGIED 349
               SCOP domains d1pznf1 F:96-349 DNA repair protein Rad51, catalytic domain                                                                                                                                                                                                    SCOP domains
               CATH domains 1pznF00 F:96-349 P-loop containing nucleotide triphosphate hydrolases                                                                                                                                                                                          CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eehhhhhhhhhh..ee...hhhhhhhhh..ee..eeeeeee....hhhhhhhhhhhhhhhhhhhh....eeeeee.....hhhhhhhhhhh...hhhhhh..eeeee..hhhhhhhhhhhhhhhhhhhhh....eeeeeee....hhhhhh....hhhhhhhhhhhhhhhhhhhhhhh..eeeeeee..---------------.........eeeeeee....eeeee..........eeeeeee..ee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------RECA_2  PDB: F:109-285 UniProt: 109-285                                                                                                                                          ----RECA_3  PDB: F:302-349 UniProt: 290-349                      PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1pzn F  96 TFmRADEYLKKRATIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVmVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARAFNSNHQmLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQ---------------GHILAHSATLRVYLRKGKGGKRIARLIDAPHLPEGEAVFSITEKGIED 349
                              |    105       115       125       135       145       155       165       175       185       195       205      |215       225       235       245       255       265       275       285|        -      |305       315       325       335       345    
                             98-MSE                                                 154-MSE                                                   212-MSE                                                                   286             302

Chain G from PDB  Type:PROTEIN  Length:238
 aligned with RADA_PYRFU | O74036 from UniProtKB/Swiss-Prot  Length:349

    Alignment length:254
                                   105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345    
           RADA_PYRFU    96 TFMRADEYLKKRATIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSATLRVYLRKGKGGKRIARLIDAPHLPEGEAVFSITEKGIED 349
               SCOP domains d1pzng1 G:96-349 DNA repair protein Rad51, catalytic domain                                                                                                                                                                                                    SCOP domains
               CATH domains 1pznG00 G:96-349 P-loop containing nucleotide triphosphate hydrolases                                                                                                                                                                                          CATH domains
           Pfam domains (1) Rad51-1pznG01 G:96-349                                                                                                                                                                                                                                         Pfam domains (1)
           Pfam domains (2) Rad51-1pznG02 G:96-349                                                                                                                                                                                                                                         Pfam domains (2)
           Pfam domains (3) Rad51-1pznG03 G:96-349                                                                                                                                                                                                                                         Pfam domains (3)
           Pfam domains (4) Rad51-1pznG04 G:96-349                                                                                                                                                                                                                                         Pfam domains (4)
           Pfam domains (5) Rad51-1pznG05 G:96-349                                                                                                                                                                                                                                         Pfam domains (5)
           Pfam domains (6) Rad51-1pznG06 G:96-349                                                                                                                                                                                                                                         Pfam domains (6)
           Pfam domains (7) Rad51-1pznG07 G:96-349                                                                                                                                                                                                                                         Pfam domains (7)
         Sec.struct. author ..eehhhhhhhh....ee...hhhhhhhh...ee..eeeeeee....hhhhhhhhhhhhhhhhhhhh....eeeeee.....hhhhhhhhhh.......hhhh.eeeee..hhhhhhhhhhhhhhhhhh.......eeeeeee....hhhhhh....hhhhhhhhhhhhhhhhhhhhhhh..eeeeeee..----------------........eeeeeeee...eeeeee..........eeeeee..eee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------RECA_2  PDB: G:109-285 UniProt: 109-285                                                                                                                                          ----RECA_3  PDB: G:303-349 UniProt: 290-349                      PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1pzn G  96 TFmRADEYLKKRATIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVmVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARAFNSNHQmLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQ----------------HILAHSATLRVYLRKGKGGKRIARLIDAPHLPEGEAVFSITEKGIED 349
                              |    105       115       125       135       145       155       165       175       185       195       205      |215       225       235       245       255       265       275       285|        -       305       315       325       335       345    
                             98-MSE                                                 154-MSE                                                   212-MSE                                                                   286              303

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: Rossmann fold (7312)

Homologous Superfamily: P-loop containing nucleotide triphosphate hydrolases (1378)

Pyrococcus furiosus. Organism_taxid: 2261. (5)

1a	1pznA02	A:101-349
1b	1pznG00	G:96-349
1c	1pznB00	B:96-349
1d	1pznC00	C:96-349
1e	1pznD00	D:96-349
1f	1pznE00	E:96-349
1g	1pznF00	F:96-349

Class: Mainly Alpha (13335)

Architecture: Orthogonal Bundle (10391)

Topology: DNA polymerase; domain 1 (617)

Homologous Superfamily: 5' to 3' exonuclease, C-terminal subdomain (384)

Pyrococcus furiosus. Organism_taxid: 2261. (2)

1pznA01

A:35-100

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: P-loop_NTPase (1112)

Family: Rad51 (10)

Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) (1)

1a	Rad51-1pznG01	G:96-349
1b	Rad51-1pznG02	G:96-349
1c	Rad51-1pznG03	G:96-349
1d	Rad51-1pznG04	G:96-349
1e	Rad51-1pznG05	G:96-349
1f	Rad51-1pznG06	G:96-349
1g	Rad51-1pznG07	G:96-349

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D,E,F,G (RADA_PYRFU | O74036)

molecular function
	GO:0005524	ATP binding	Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
	GO:0003677	DNA binding	Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
	GO:0008094	DNA-dependent ATPase activity	Catalysis of the reaction: ATP + H2O = ADP + phosphate; this reaction requires the presence of single- or double-stranded DNA, and it drives another reaction.
	GO:0003684	damaged DNA binding	Interacting selectively and non-covalently with damaged DNA.
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
biological process
	GO:0006259	DNA metabolic process	Any cellular metabolic process involving deoxyribonucleic acid. This is one of the two main types of nucleic acid, consisting of a long, unbranched macromolecule formed from one, or more commonly, two, strands of linked deoxyribonucleotides.
	GO:0006310	DNA recombination	Any process in which a new genotype is formed by reassortment of genes resulting in gene combinations different from those that were present in the parents. In eukaryotes genetic recombination can occur by chromosome assortment, intrachromosomal recombination, or nonreciprocal interchromosomal recombination. Intrachromosomal recombination occurs by crossing over. In bacteria it may occur by genetic transformation, conjugation, transduction, or F-duction.
	GO:0006281	DNA repair	The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
	GO:0006974	cellular response to DNA damage stimulus	Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism.

Asymmetric Unit
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	Cis Peptide Bonds
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	1pzn
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(no "Related Entries Specified in the PDB File" available for 1PZN)

Description

Compounds

Structural Features

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Ligands, Modified Residues, Ions (5, 50)

Sites (29, 29)

SS Bonds (0, 0)

Cis Peptide Bonds (7, 7)

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