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(-) Description

Title :  ACETYL COA SYNTHETASE, ACETYLATED ON LYS609
 
Authors :  A. M. Gulick, V. J. Starai, A. R. Horswill, K. M. Homick, J. C. Escalante- Semerena
Date :  27 May 03  (Deposition) - 03 Jun 03  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Amp-Forming; Adenylate-Forming; Thioester-Forming; Lysine Acetylation, Ligase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  A. M. Gulick, V. J. Starai, A. R. Horswill, K. M. Homick, J. C. Escalante-Semerena
The 1. 75 A Crystal Structure Of Acetyl-Coa Synthetase Bound To Adenosine-5'-Propylphosphate And Coenzyme A
Biochemistry V. 42 2866 2003
PubMed-ID: 12627952  |  Reference-DOI: 10.1021/BI0271603
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - ACETYL-COA SYNTHETASE
    ChainsA, B
    EC Number6.2.1.1
    EngineeredYES
    Expression SystemESCHERICHIA COLI BL21(DE3)
    Expression System PlasmidPTYB1
    Expression System StrainBL21(DE3)
    Expression System Taxid469008
    Expression System Vector TypePLASMID
    GeneACS
    MutationYES
    Organism ScientificSALMONELLA ENTERICA
    Organism Taxid28901

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit AB
Biological Unit 1 (1x)A 
Biological Unit 2 (1x) B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 12)

Asymmetric Unit (4, 12)
No.NameCountTypeFull Name
1COA2Ligand/IonCOENZYME A
2EDO6Ligand/Ion1,2-ETHANEDIOL
3MG2Ligand/IonMAGNESIUM ION
4PRX2Ligand/IonADENOSINE-5'-MONOPHOSPHATE-PROPYL ESTER
Biological Unit 1 (3, 5)
No.NameCountTypeFull Name
1COA1Ligand/IonCOENZYME A
2EDO3Ligand/Ion1,2-ETHANEDIOL
3MG-1Ligand/IonMAGNESIUM ION
4PRX1Ligand/IonADENOSINE-5'-MONOPHOSPHATE-PROPYL ESTER
Biological Unit 2 (3, 5)
No.NameCountTypeFull Name
1COA1Ligand/IonCOENZYME A
2EDO3Ligand/Ion1,2-ETHANEDIOL
3MG-1Ligand/IonMAGNESIUM ION
4PRX1Ligand/IonADENOSINE-5'-MONOPHOSPHATE-PROPYL ESTER

(-) Sites  (12, 12)

Asymmetric Unit (12, 12)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREVAL B:537 , HIS B:539 , ILE B:542 , HOH B:1137 , HOH B:1148BINDING SITE FOR RESIDUE MG B 901
02AC2SOFTWAREVAL A:537 , HIS A:539 , ILE A:542 , HOH A:1097 , HOH A:1198 , HOH A:1200BINDING SITE FOR RESIDUE MG A 902
03AC3SOFTWAREPHE A:163 , GLY A:164 , GLY A:165 , ARG A:191 , ARG A:194 , ILE A:196 , SER A:523 , HIS A:525 , ARG A:584 , PRO A:589 , HOH A:1034 , HOH A:1181BINDING SITE FOR RESIDUE COA A 990
04AC4SOFTWAREPHE B:163 , GLY B:164 , GLY B:165 , ARG B:191 , ARG B:194 , ILE B:196 , ARG B:584 , PRO B:589 , HOH B:1172BINDING SITE FOR RESIDUE COA B 991
05AC5SOFTWARETHR A:311 , GLY A:387 , GLU A:388 , PRO A:389 , ASP A:411 , THR A:412 , TRP A:413 , TRP A:414 , GLN A:415 , THR A:416 , ASP A:500 , ARG A:515 , ARG A:526 , HOH A:1156BINDING SITE FOR RESIDUE PRX A 999
06AC6SOFTWARETHR B:311 , GLY B:387 , GLU B:388 , PRO B:389 , ASP B:411 , THR B:412 , TRP B:413 , TRP B:414 , GLN B:415 , THR B:416 , ASP B:500 , ILE B:512 , ARG B:515 , ARG B:526 , HOH B:1168BINDING SITE FOR RESIDUE PRX B 998
07AC7SOFTWAREVAL B:161 , ILE B:162 , PHE B:163 , PHE B:166 , TYR B:263 , GLY B:308 , HOH B:1038BINDING SITE FOR RESIDUE EDO B 800
08AC8SOFTWAREVAL A:161 , ILE A:162 , PHE A:163 , PHE A:166 , TYR A:263 , GLY A:308 , HOH A:1037BINDING SITE FOR RESIDUE EDO A 801
09AC9SOFTWAREGLU A:41 , GLN A:42 , ILE A:45 , HOH A:1009BINDING SITE FOR RESIDUE EDO A 802
10BC1SOFTWAREGLY A:164 , GLY A:165 , PHE A:166 , SER A:167 , ILE A:196 , ASN A:201 , ARG A:584 , PRO A:589BINDING SITE FOR RESIDUE EDO A 803
11BC2SOFTWAREVAL B:190 , GLY B:193 , ARG B:194 , SER B:195BINDING SITE FOR RESIDUE EDO B 804
12BC3SOFTWAREGLY B:164 , GLY B:165 , PHE B:166 , SER B:167 , ILE B:196 , ASN B:201 , ARG B:584 , HOH B:1104BINDING SITE FOR RESIDUE EDO B 805

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1PG3)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Trp A:336 -Pro A:337
2Trp B:336 -Pro B:337

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1PG3)

(-) PROSITE Motifs  (1, 2)

Asymmetric Unit (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1AMP_BINDINGPS00455 Putative AMP-binding domain signature.ACSA_SALTY261-272
 
  2A:261-272
B:261-272
Biological Unit 1 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1AMP_BINDINGPS00455 Putative AMP-binding domain signature.ACSA_SALTY261-272
 
  1A:261-272
-
Biological Unit 2 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1AMP_BINDINGPS00455 Putative AMP-binding domain signature.ACSA_SALTY261-272
 
  1-
B:261-272

(-) Exons   (0, 0)

(no "Exon" information available for 1PG3)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:634
 aligned with ACSA_SALTY | Q8ZKF6 from UniProtKB/Swiss-Prot  Length:652

    Alignment length:643
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504       514       524       534       544       554       564       574       584       594       604       614       624       634       644   
           ACSA_SALTY     5 HKHAIPANIADRCLINPEQYETKYKQSINDPDTFWGEQGKILDWITPYQKVKNTSFAPGNVSIKWYEDGTLNLAANCLDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEGHPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILRKIAAGDTSNLGDTSTLADPGVVEKLLEEKQA 647
               SCOP domains d1pg3a_ A: Acetyl-CoA synthetase                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1pg3A02 A:518-647  [code=3.30.300.30, no name defined]                                                                             CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhh.........eeeeee..eeeeee....eehhhhhhh..hhhhhh..eeeeee......eeeeehhhhhhhhhhhhhhhhhhh.....eeeee...hhhhhhhhhhhhhh..eeee.....hhhhhhhhhhhhh..eeeee.eeee..eeeehhhhhhhhhhh.......eeeee.............eeehhhhhh..........ee...eeeeeee.......eeeeeehhhhhhhhhhhhhhhh......eeee.....hhhhhhhhhhhhhhh..eeeee.........hhhhhhhhhh...eeeehhhhhhhhhhhhhhhh.........eeeee....hhhhhhhhhhhh......eeee..hhhhh..........................eeee..........eeeeeee.........ee..hhhhhhhhhhh.....eeeeeeeee.....eeeeee...eee....eeehhhhhhhhhh...eeeeeeeeeee...eeeeeeeeee......hhhhhhhhhhhhhhhhhhhhh..eeee............hhhhhhhhhhh.---------...hhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AMP_BINDING --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1pg3 A   5 HKHAIPANIADRCLINPEQYETKYKQSINDPDTFWGEQGKILDWITPYQKVKNTSFAPGNVSIKWYEDGTLNLAANCLDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEGHPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILRKIAAGD---------LADPGVVEKLLEEKQA 647
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504       514       524       534       544       554       564       574       584       594       604       614       | -       634       644   
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   622       632               

Chain B from PDB  Type:PROTEIN  Length:639
 aligned with ACSA_SALTY | Q8ZKF6 from UniProtKB/Swiss-Prot  Length:652

    Alignment length:643
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504       514       524       534       544       554       564       574       584       594       604       614       624       634       644   
           ACSA_SALTY     5 HKHAIPANIADRCLINPEQYETKYKQSINDPDTFWGEQGKILDWITPYQKVKNTSFAPGNVSIKWYEDGTLNLAANCLDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEGHPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILRKIAAGDTSNLGDTSTLADPGVVEKLLEEKQA 647
               SCOP domains d1pg3b_ B: Acetyl-CoA synthetase                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1pg3B02 B:518-647  [code=3.30.300.30, no name defined]                                                                             CATH domains
           Pfam domains (1) ------------DUF3448-1pg3B03 B:17-102                                                              ------AMP-binding-1pg3B01 B:109-547                                                                                                                                                                                                                                                                                                                                                                                                                          ------------------------------------------DUF4009-1pg3B05 B:590-634                    ------------- Pfam domains (1)
           Pfam domains (2) ------------DUF3448-1pg3B04 B:17-102                                                              ------AMP-binding-1pg3B02 B:109-547                                                                                                                                                                                                                                                                                                                                                                                                                          ------------------------------------------DUF4009-1pg3B06 B:590-634                    ------------- Pfam domains (2)
         Sec.struct. author .....hhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh.........eeee......eeee....eehhhhhhh..hhhhhh..eeeeee......eeeeehhhhhhhhhhhhhhhhhhh.....eeeee...hhhhhhhhhhhhhh..eeee.....hhhhhhhhhhhhh..eeeee.eeee..eeeehhhhhhhhhh........eeeee.............eeehhhhhh..........ee...eeeeeee.......eeeeeehhhhhhhhhhhhhhhh......eeee.....hhhhhhhhhhhhhhh..eeeee.........hhhhhhhhhh...eeeehhhhhhhhhhhhhhhh.........eeee.....hhhhhhhhhhhh......eee...hhhhh..........................eeee.....ee...eeeeeee.........ee..hhhhhhhhhhh.....eeeeeeeee.....eeeeee...eeee..eeeehhhhhhhhhh...eeeeeeeeeee...eeeeeeeeee......hhhhhhhhhhhhhhhhhhhhh..eeee............hhhhhhhhhhh.----.........hhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AMP_BINDING --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1pg3 B   5 HKHAIPANIADRCLINPEQYETKYKQSINDPDTFWGEQGKILDWITPYQKVKNTSFAPGNVSIKWYEDGTLNLAANCLDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEGHPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILRKIAAGD----GDTSTLADPGVVEKLLEEKQA 647
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504       514       524       534       544       554       564       574       584       594       604       614       | -  |    634       644   
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   622  627                    

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit

(-) CATH Domains  (1, 2)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (3, 6)

Asymmetric Unit
(-)
Clan: ANL (32)

(-) Gene Ontology  (10, 10)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (ACSA_SALTY | Q8ZKF6)
molecular function
    GO:0016208    AMP binding    Interacting selectively and non-covalently with AMP, adenosine monophosphate.
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0003987    acetate-CoA ligase activity    Catalysis of the reaction: ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA.
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0016874    ligase activity    Catalysis of the joining of two substances, or two groups within a single molecule, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
biological process
    GO:0019427    acetyl-CoA biosynthetic process from acetate    The chemical reactions and pathways resulting in the formation of acetyl-CoA from acetate, either directly or via acetylphosphate.
    GO:0006935    chemotaxis    The directed movement of a motile cell or organism, or the directed growth of a cell guided by a specific chemical concentration gradient. Movement may be towards a higher concentration (positive chemotaxis) or towards a lower concentration (negative chemotaxis).
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ACSA_SALTY | Q8ZKF61pg4 2p20 2p2b 2p2f 2p2j 2p2m 2p2q 5jrh

(-) Related Entries Specified in the PDB File

1pg4 ACETYL COA SYNTHETASE