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1PG3
Asym. Unit
Info
Asym.Unit (216 KB)
Biol.Unit 1 (108 KB)
Biol.Unit 2 (108 KB)
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(1)
Title
:
ACETYL COA SYNTHETASE, ACETYLATED ON LYS609
Authors
:
A. M. Gulick, V. J. Starai, A. R. Horswill, K. M. Homick, J. C. Escalante- Semerena
Date
:
27 May 03 (Deposition) - 03 Jun 03 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Amp-Forming; Adenylate-Forming; Thioester-Forming; Lysine Acetylation, Ligase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. M. Gulick, V. J. Starai, A. R. Horswill, K. M. Homick, J. C. Escalante-Semerena
The 1. 75 A Crystal Structure Of Acetyl-Coa Synthetase Bound To Adenosine-5'-Propylphosphate And Coenzyme A
Biochemistry V. 42 2866 2003
(for further references see the
PDB file header
)
[
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Hetero Components
(4, 12)
Info
All Hetero Components
1a: COENZYME A (COAa)
1b: COENZYME A (COAb)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
4a: ADENOSINE-5'-MONOPHOSPHATE-PROPYL ... (PRXa)
4b: ADENOSINE-5'-MONOPHOSPHATE-PROPYL ... (PRXb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
COA
2
Ligand/Ion
COENZYME A
2
EDO
6
Ligand/Ion
1,2-ETHANEDIOL
3
MG
2
Ligand/Ion
MAGNESIUM ION
4
PRX
2
Ligand/Ion
ADENOSINE-5'-MONOPHOSPHATE-PROPYL ESTER
[
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]
Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
VAL B:537 , HIS B:539 , ILE B:542 , HOH B:1137 , HOH B:1148
BINDING SITE FOR RESIDUE MG B 901
02
AC2
SOFTWARE
VAL A:537 , HIS A:539 , ILE A:542 , HOH A:1097 , HOH A:1198 , HOH A:1200
BINDING SITE FOR RESIDUE MG A 902
03
AC3
SOFTWARE
PHE A:163 , GLY A:164 , GLY A:165 , ARG A:191 , ARG A:194 , ILE A:196 , SER A:523 , HIS A:525 , ARG A:584 , PRO A:589 , HOH A:1034 , HOH A:1181
BINDING SITE FOR RESIDUE COA A 990
04
AC4
SOFTWARE
PHE B:163 , GLY B:164 , GLY B:165 , ARG B:191 , ARG B:194 , ILE B:196 , ARG B:584 , PRO B:589 , HOH B:1172
BINDING SITE FOR RESIDUE COA B 991
05
AC5
SOFTWARE
THR A:311 , GLY A:387 , GLU A:388 , PRO A:389 , ASP A:411 , THR A:412 , TRP A:413 , TRP A:414 , GLN A:415 , THR A:416 , ASP A:500 , ARG A:515 , ARG A:526 , HOH A:1156
BINDING SITE FOR RESIDUE PRX A 999
06
AC6
SOFTWARE
THR B:311 , GLY B:387 , GLU B:388 , PRO B:389 , ASP B:411 , THR B:412 , TRP B:413 , TRP B:414 , GLN B:415 , THR B:416 , ASP B:500 , ILE B:512 , ARG B:515 , ARG B:526 , HOH B:1168
BINDING SITE FOR RESIDUE PRX B 998
07
AC7
SOFTWARE
VAL B:161 , ILE B:162 , PHE B:163 , PHE B:166 , TYR B:263 , GLY B:308 , HOH B:1038
BINDING SITE FOR RESIDUE EDO B 800
08
AC8
SOFTWARE
VAL A:161 , ILE A:162 , PHE A:163 , PHE A:166 , TYR A:263 , GLY A:308 , HOH A:1037
BINDING SITE FOR RESIDUE EDO A 801
09
AC9
SOFTWARE
GLU A:41 , GLN A:42 , ILE A:45 , HOH A:1009
BINDING SITE FOR RESIDUE EDO A 802
10
BC1
SOFTWARE
GLY A:164 , GLY A:165 , PHE A:166 , SER A:167 , ILE A:196 , ASN A:201 , ARG A:584 , PRO A:589
BINDING SITE FOR RESIDUE EDO A 803
11
BC2
SOFTWARE
VAL B:190 , GLY B:193 , ARG B:194 , SER B:195
BINDING SITE FOR RESIDUE EDO B 804
12
BC3
SOFTWARE
GLY B:164 , GLY B:165 , PHE B:166 , SER B:167 , ILE B:196 , ASN B:201 , ARG B:584 , HOH B:1104
BINDING SITE FOR RESIDUE EDO B 805
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: AMP_BINDING (A:261-272,B:261-272)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
AMP_BINDING
PS00455
Putative AMP-binding domain signature.
ACSA_SALTY
261-272
2
A:261-272
B:261-272
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1pg3a_ (A:)
1b: SCOP_d1pg3b_ (B:)
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Classes
(
)
(
)
Folds
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)
(
)
Superfamilies
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)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
Acetyl-CoA synthetase-like
(64)
Superfamily
:
Acetyl-CoA synthetase-like
(64)
Family
:
Acetyl-CoA synthetase-like
(38)
Protein domain
:
Acetyl-CoA synthetase
(9)
Salmonella enterica [TaxId: 28901]
(2)
1a
d1pg3a_
A:
1b
d1pg3b_
B:
[
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1pg3A02 (A:518-647)
1b: CATH_1pg3B02 (B:518-647)
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Topologies
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Homologous Superfamilies
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
GMP Synthetase; Chain A, domain 3
(192)
Homologous Superfamily
:
[code=3.30.300.30, no name defined]
(30)
Salmonella enterica. Organism_taxid: 28901.
(2)
1a
1pg3A02
A:518-647
1b
1pg3B02
B:518-647
[
close CATH info
]
Pfam Domains
(3, 6)
Info
all PFAM domains
1a: PFAM_AMP_binding_1pg3B01 (B:109-547)
1b: PFAM_AMP_binding_1pg3B02 (B:109-547)
2a: PFAM_DUF3448_1pg3B03 (B:17-102)
2b: PFAM_DUF3448_1pg3B04 (B:17-102)
3a: PFAM_DUF4009_1pg3B05 (B:590-634)
3b: PFAM_DUF4009_1pg3B06 (B:590-634)
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Clans
(
)
(
)
Families
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)
(
)
Organisms
(
)
(
)
Clan
:
ANL
(32)
Family
:
AMP-binding
(32)
Salmonella typhimurium
(7)
1a
AMP-binding-1pg3B01
B:109-547
1b
AMP-binding-1pg3B02
B:109-547
Clan
:
no clan defined [family: DUF3448]
(8)
Family
:
DUF3448
(8)
Salmonella typhimurium
(7)
2a
DUF3448-1pg3B03
B:17-102
2b
DUF3448-1pg3B04
B:17-102
Clan
:
no clan defined [family: DUF4009]
(14)
Family
:
DUF4009
(14)
Salmonella typhimurium
(7)
3a
DUF4009-1pg3B05
B:590-634
3b
DUF4009-1pg3B06
B:590-634
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]
Atom Selection
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Asymmetric Unit 1
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select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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Asym.Unit (216 KB)
Header - Asym.Unit
Biol.Unit 1 (108 KB)
Header - Biol.Unit 1
Biol.Unit 2 (108 KB)
Header - Biol.Unit 2
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