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Asym./Biol. Unit (Jmol Viewer)

Asym./Biol. Unit - sites (Jmol Viewer)

Title :   PURINE NUCLEOSIDE PHOSPHORYLASE FROM THERMUS THERMOPHILUS

Authors :   T. H. Tahirov, E. Inagaki, M. Miyano

Date :   19 Feb 03 (Deposition) - 27 Feb 03 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.10

Chains :   Asym./Biol. Unit : A,B,C,D,E,F

Keywords :   Nucleoside Phosphorylase, Alpha-Beta Protein, Transferase, Riken Structural Genomics/Proteomics Initiative, Rsgi, Structural Genomics (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   T. H. Tahirov, E. Inagaki, N. Ohshima, T. Kitao, C. Kuroishi, Y. Ukita, K. Takio, M. Kobayashi, S. Kuramitsu, S. Yokoyama, M. Miyano
Crystal Structure Of Purine Nucleoside Phosphorylase From Thermus Thermophilus
J. Mol. Biol. V. 337 1149 2004
PubMed-ID: 15046984 | Reference-DOI: 10.1016/J.JMB.2004.02.016

Molecule 1 - PURINE NUCLEOSIDE PHOSPHORYLASE
	Chains	:	A, B, C, D, E, F
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET11A
	Expression System Strain	:	B834(DE3)PLYSS
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Organism Scientific	:	THERMUS THERMOPHILUS
	Organism Taxid	:	300852
	Strain	:	HB8

		1	2	3	4	5	6
Asymmetric/Biological Unit	:	A	B	C	D	E	F

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (3, 20)

No.	Name	Count	Type	Full Name
1	CL	6	Ligand/Ion	CHLORIDE ION
2	GOL	6	Ligand/Ion	GLYCEROL
3	SO4	8	Ligand/Ion	SULFATE ION

Asymmetric Unit (20, 20)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	GLY A:21 , ARG A:25 , ARG A:87 , GLY A:89 , THR A:90 , HOH A:2134 , HOH A:2135 , ARG B:44	BINDING SITE FOR RESIDUE SO4 A1236
02	AC2	SOFTWARE	ARG A:135 , ARG A:139 , ARG F:135 , ARG F:139	BINDING SITE FOR RESIDUE SO4 A1237
03	AC3	SOFTWARE	GLU A:15 , PRO A:57	BINDING SITE FOR RESIDUE CL A1240
04	AC4	SOFTWARE	ARG A:44 , GLY B:21 , ARG B:25 , ARG B:87 , GLY B:89 , THR B:90 , HOH B:2120	BINDING SITE FOR RESIDUE SO4 B1236
05	AC5	SOFTWARE	ARG B:135 , ARG B:139 , HOH B:2145 , ARG C:135 , ARG C:139	BINDING SITE FOR RESIDUE SO4 B1237
06	AC6	SOFTWARE	GLU B:15 , HOH B:2048	BINDING SITE FOR RESIDUE CL B1240
07	AC7	SOFTWARE	GLY C:21 , ARG C:25 , ARG C:87 , GLY C:89 , THR C:90 , HOH C:2107 , HOH C:2108 , ARG D:44	BINDING SITE FOR RESIDUE SO4 C1236
08	AC8	SOFTWARE	GLU C:15	BINDING SITE FOR RESIDUE CL C1237
09	AC9	SOFTWARE	ARG C:44 , GLY D:21 , ARG D:25 , ARG D:87 , GLY D:89 , THR D:90 , HOH D:2083 , HOH D:2084	BINDING SITE FOR RESIDUE SO4 D1236
10	BC1	SOFTWARE	GLU D:15 , PRO D:57	BINDING SITE FOR RESIDUE CL D1238
11	BC2	SOFTWARE	GLY E:21 , ARG E:25 , ARG E:87 , GLY E:89 , THR E:90 , HOH E:2120 , HOH E:2121 , ARG F:44	BINDING SITE FOR RESIDUE SO4 E1236
12	BC3	SOFTWARE	ALA E:14 , GLU E:15	BINDING SITE FOR RESIDUE CL E1238
13	BC4	SOFTWARE	ARG E:44 , GLY F:21 , ARG F:25 , ARG F:87 , GLY F:89 , THR F:90 , HOH F:2103	BINDING SITE FOR RESIDUE SO4 F1236
14	BC5	SOFTWARE	GLU F:15 , HOH F:2041	BINDING SITE FOR RESIDUE CL F1237
15	BC6	SOFTWARE	TRP A:170 , TYR A:173 , LEU F:120 , GLU F:121 , ARG F:123	BINDING SITE FOR RESIDUE GOL A1238
16	BC7	SOFTWARE	ARG A:123 , HOH A:2136 , ALA F:169 , TRP F:170 , TYR F:173	BINDING SITE FOR RESIDUE GOL A1239
17	BC8	SOFTWARE	ALA B:169 , TRP B:170 , TYR B:173 , LEU C:120 , ARG C:123	BINDING SITE FOR RESIDUE GOL B1238
18	BC9	SOFTWARE	ARG B:123 , ALA C:169 , TRP C:170 , TYR C:173	BINDING SITE FOR RESIDUE GOL B1239
19	CC1	SOFTWARE	ALA D:169 , TYR D:173 , GLU E:121 , ARG E:123	BINDING SITE FOR RESIDUE GOL D1237
20	CC2	SOFTWARE	LEU D:120 , ARG D:123 , TRP E:170 , TYR E:173 , HOH E:2122	BINDING SITE FOR RESIDUE GOL E1237

(no "SS Bond" information available for 1ODL)

(no "Cis Peptide Bond" information available for 1ODL)

(no "SAP(SNP)/Variant" information available for 1ODL)

(no "PROSITE Motif" information available for 1ODL)

(no "Exon" information available for 1ODL)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:234
 aligned with Q5SID9_THET8 | Q5SID9 from UniProtKB/TrEMBL  Length:235

    Alignment length:234
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231    
         Q5SID9_THET8     2 SPIHVRAHPGDVAERVLLPGDPGRAEWIAKTFLQNPRRYNDHRGLWGYTGLYKGVPVSVQTTGMGTPSAAIVVEELVRLGARVLVRVGTAGAASSDLAPGELIVAQGAVPLDGTTRQYLEGRPYAPVPDPEVFRALWRRAEALGYPHRVGLVASEDAFYATTPEEARAWARYGVLAFEMEASALFLLGRMRGVRTGAILAVSNRIGDPELAPPEVLQEGVRRMVEVALEAVLEV 235
               SCOP domains d1odla_ A: Purine nucleoside phosphorylase, PNP                                                                                                                                                                                            SCOP domains
               CATH domains 1odlA00 A:2-235  [code=3.40.50.1580, no name defined]                                                                                                                                                                                      CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .......hhhhh..eeee..hhhhhhhhhhhhh.......hhhhh.eeeeee..eeeeee....hhhhhhhhhhhhhhhh..eeeeeeeeee.........eeeeeeeeeehhhhhhhh.........hhhhhhhhhhhhhhh...eeeeeeeee......hhhhhhhhhh..eeeee.hhhhhhhhhhhhh.eeeeeeeeeee.......hhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1odl A   2 SPIHVRAHPGDVAERVLLPGDPGRAEWIAKTFLQNPRRYNDHRGLWGYTGLYKGVPVSVQTTGMGTPSAAIVVEELVRLGARVLVRVGTAGAASSDLAPGELIVAQGAVPLDGTTRQYLEGRPYAPVPDPEVFRALWRRAEALGYPHRVGLVASEDAFYATTPEEARAWARYGVLAFEMEASALFLLGRMRGVRTGAILAVSNRIGDPELAPPEVLQEGVRRMVEVALEAVLEV 235
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231

Chain B from PDB  Type:PROTEIN  Length:234
 aligned with Q5SID9_THET8 | Q5SID9 from UniProtKB/TrEMBL  Length:235

    Alignment length:234
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231    
         Q5SID9_THET8     2 SPIHVRAHPGDVAERVLLPGDPGRAEWIAKTFLQNPRRYNDHRGLWGYTGLYKGVPVSVQTTGMGTPSAAIVVEELVRLGARVLVRVGTAGAASSDLAPGELIVAQGAVPLDGTTRQYLEGRPYAPVPDPEVFRALWRRAEALGYPHRVGLVASEDAFYATTPEEARAWARYGVLAFEMEASALFLLGRMRGVRTGAILAVSNRIGDPELAPPEVLQEGVRRMVEVALEAVLEV 235
               SCOP domains d1odlb_ B: Purine nucleoside phosphorylase, PNP                                                                                                                                                                                            SCOP domains
               CATH domains 1odlB00 B:2-235  [code=3.40.50.1580, no name defined]                                                                                                                                                                                      CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..............eeee..hhhhhhhhhhhhh.......hhhhh.eeeeee..eeeeee....hhhhhhhhhhhhhhh...eeeeeeeeee.........eeeeeeeeeehhhhhhhhh........hhhhhhhhhhhhhhhh..eeeeeeeee......hhhhhhhhhh..eeeee.hhhhhhhhhhhhh.eeeeeeeeeee.......hhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1odl B   2 SPIHVRAHPGDVAERVLLPGDPGRAEWIAKTFLQNPRRYNDHRGLWGYTGLYKGVPVSVQTTGMGTPSAAIVVEELVRLGARVLVRVGTAGAASSDLAPGELIVAQGAVPLDGTTRQYLEGRPYAPVPDPEVFRALWRRAEALGYPHRVGLVASEDAFYATTPEEARAWARYGVLAFEMEASALFLLGRMRGVRTGAILAVSNRIGDPELAPPEVLQEGVRRMVEVALEAVLEV 235
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231

Chain C from PDB  Type:PROTEIN  Length:234
 aligned with Q5SID9_THET8 | Q5SID9 from UniProtKB/TrEMBL  Length:235

    Alignment length:234
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231    
         Q5SID9_THET8     2 SPIHVRAHPGDVAERVLLPGDPGRAEWIAKTFLQNPRRYNDHRGLWGYTGLYKGVPVSVQTTGMGTPSAAIVVEELVRLGARVLVRVGTAGAASSDLAPGELIVAQGAVPLDGTTRQYLEGRPYAPVPDPEVFRALWRRAEALGYPHRVGLVASEDAFYATTPEEARAWARYGVLAFEMEASALFLLGRMRGVRTGAILAVSNRIGDPELAPPEVLQEGVRRMVEVALEAVLEV 235
               SCOP domains d1odlc_ C: Purine nucleoside phosphorylase, PNP                                                                                                                                                                                            SCOP domains
               CATH domains 1odlC00 C:2-235  [code=3.40.50.1580, no name defined]                                                                                                                                                                                      CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..............eeee..hhhhhhhhhhhhheeeeeeehhhhh.eeeeee..eeeeee....hhhhhhhhhhhhhhhh..eeeeeeeeee.........eeeeeeeeeehhhhhhhhh........hhhhhhhhhhhhhhh...eeeeeeeee......hhhhhhhhhh..eeeee.hhhhhhhhhhhh..eeeeeeeeeee.......hhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1odl C   2 SPIHVRAHPGDVAERVLLPGDPGRAEWIAKTFLQNPRRYNDHRGLWGYTGLYKGVPVSVQTTGMGTPSAAIVVEELVRLGARVLVRVGTAGAASSDLAPGELIVAQGAVPLDGTTRQYLEGRPYAPVPDPEVFRALWRRAEALGYPHRVGLVASEDAFYATTPEEARAWARYGVLAFEMEASALFLLGRMRGVRTGAILAVSNRIGDPELAPPEVLQEGVRRMVEVALEAVLEV 235
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231

Chain D from PDB  Type:PROTEIN  Length:234
 aligned with Q5SID9_THET8 | Q5SID9 from UniProtKB/TrEMBL  Length:235

    Alignment length:234
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231    
         Q5SID9_THET8     2 SPIHVRAHPGDVAERVLLPGDPGRAEWIAKTFLQNPRRYNDHRGLWGYTGLYKGVPVSVQTTGMGTPSAAIVVEELVRLGARVLVRVGTAGAASSDLAPGELIVAQGAVPLDGTTRQYLEGRPYAPVPDPEVFRALWRRAEALGYPHRVGLVASEDAFYATTPEEARAWARYGVLAFEMEASALFLLGRMRGVRTGAILAVSNRIGDPELAPPEVLQEGVRRMVEVALEAVLEV 235
               SCOP domains d1odld_ D: Purine nucleoside phosphorylase, PNP                                                                                                                                                                                            SCOP domains
               CATH domains 1odlD00 D:2-235  [code=3.40.50.1580, no name defined]                                                                                                                                                                                      CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..............eeee..hhhhhhhhhhhh.eeeeeeehhhhh.eeeeee..eeeeee....hhhhhhhhhhhhhhh...eeeeeeeeee.........eeeeeeeee.hhhhhhhhh........hhhhhhhhhhhhhhh...eeeeeeee..hhhhhhhhhhhhhhh..eeeee.hhhhhhhhhhhh..eeeeeeeeeee.......hhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1odl D   2 SPIHVRAHPGDVAERVLLPGDPGRAEWIAKTFLQNPRRYNDHRGLWGYTGLYKGVPVSVQTTGMGTPSAAIVVEELVRLGARVLVRVGTAGAASSDLAPGELIVAQGAVPLDGTTRQYLEGRPYAPVPDPEVFRALWRRAEALGYPHRVGLVASEDAFYATTPEEARAWARYGVLAFEMEASALFLLGRMRGVRTGAILAVSNRIGDPELAPPEVLQEGVRRMVEVALEAVLEV 235
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231

Chain E from PDB  Type:PROTEIN  Length:234
 aligned with Q5SID9_THET8 | Q5SID9 from UniProtKB/TrEMBL  Length:235

    Alignment length:234
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231    
         Q5SID9_THET8     2 SPIHVRAHPGDVAERVLLPGDPGRAEWIAKTFLQNPRRYNDHRGLWGYTGLYKGVPVSVQTTGMGTPSAAIVVEELVRLGARVLVRVGTAGAASSDLAPGELIVAQGAVPLDGTTRQYLEGRPYAPVPDPEVFRALWRRAEALGYPHRVGLVASEDAFYATTPEEARAWARYGVLAFEMEASALFLLGRMRGVRTGAILAVSNRIGDPELAPPEVLQEGVRRMVEVALEAVLEV 235
               SCOP domains d1odle_ E: Purine nucleoside phosphorylase, PNP                                                                                                                                                                                            SCOP domains
               CATH domains 1odlE00 E:2-235  [code=3.40.50.1580, no name defined]                                                                                                                                                                                      CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .......hhhhh..eeee..hhhhhhhhhhhhheeeeeeehhhhh.eeeeee..eeeeee....hhhhhhhhhhhhhhh...eeeeeeeeee.........eeeeeeeeeehhhhhhhh.........hhhhhhhhhhhhhhh...eeeeeeeee......hhhhhhhhhh..eeeee.hhhhhhhhhhhhh.eeeeeeeeeee.......hhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1odl E   2 SPIHVRAHPGDVAERVLLPGDPGRAEWIAKTFLQNPRRYNDHRGLWGYTGLYKGVPVSVQTTGMGTPSAAIVVEELVRLGARVLVRVGTAGAASSDLAPGELIVAQGAVPLDGTTRQYLEGRPYAPVPDPEVFRALWRRAEALGYPHRVGLVASEDAFYATTPEEARAWARYGVLAFEMEASALFLLGRMRGVRTGAILAVSNRIGDPELAPPEVLQEGVRRMVEVALEAVLEV 235
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231

Chain F from PDB  Type:PROTEIN  Length:234
 aligned with Q5SID9_THET8 | Q5SID9 from UniProtKB/TrEMBL  Length:235

    Alignment length:234
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231    
         Q5SID9_THET8     2 SPIHVRAHPGDVAERVLLPGDPGRAEWIAKTFLQNPRRYNDHRGLWGYTGLYKGVPVSVQTTGMGTPSAAIVVEELVRLGARVLVRVGTAGAASSDLAPGELIVAQGAVPLDGTTRQYLEGRPYAPVPDPEVFRALWRRAEALGYPHRVGLVASEDAFYATTPEEARAWARYGVLAFEMEASALFLLGRMRGVRTGAILAVSNRIGDPELAPPEVLQEGVRRMVEVALEAVLEV 235
               SCOP domains d1odlf_ F: Purine nucleoside phosphorylase, PNP                                                                                                                                                                                            SCOP domains
               CATH domains 1odlF00 F:2-235  [code=3.40.50.1580, no name defined]                                                                                                                                                                                      CATH domains
           Pfam domains (1) -------------PNP_UDP_1-1odlF01 F:15-234                                                                                                                                                                                                  - Pfam domains (1)
           Pfam domains (2) -------------PNP_UDP_1-1odlF02 F:15-234                                                                                                                                                                                                  - Pfam domains (2)
           Pfam domains (3) -------------PNP_UDP_1-1odlF03 F:15-234                                                                                                                                                                                                  - Pfam domains (3)
           Pfam domains (4) -------------PNP_UDP_1-1odlF04 F:15-234                                                                                                                                                                                                  - Pfam domains (4)
           Pfam domains (5) -------------PNP_UDP_1-1odlF05 F:15-234                                                                                                                                                                                                  - Pfam domains (5)
           Pfam domains (6) -------------PNP_UDP_1-1odlF06 F:15-234                                                                                                                                                                                                  - Pfam domains (6)
         Sec.struct. author ..............eeee..hhhhhhhhhhhhheeeeeeehhhhh.eeeeee..eeeeee....hhhhhhhhhhhhhhh...eeeeeeeeee.........eeeeeeeeeehhhhhhhh.........hhhhhhhhhhhhhhh...eeeeeeeee......hhhhhhhhhh..eeeee.hhhhhhhhhhhh..eeeeeeeeeee.......hhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1odl F   2 SPIHVRAHPGDVAERVLLPGDPGRAEWIAKTFLQNPRRYNDHRGLWGYTGLYKGVPVSVQTTGMGTPSAAIVVEELVRLGARVLVRVGTAGAASSDLAPGELIVAQGAVPLDGTTRQYLEGRPYAPVPDPEVFRALWRRAEALGYPHRVGLVASEDAFYATTPEEARAWARYGVLAFEMEASALFLLGRMRGVRTGAILAVSNRIGDPELAPPEVLQEGVRRMVEVALEAVLEV 235
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: Phosphorylase/hydrolase-like (558)

Superfamily: Purine and uridine phosphorylases (283)

Family: Purine and uridine phosphorylases (224)

Protein domain: Purine nucleoside phosphorylase, PNP (93)

Thermus thermophilus [TaxId: 274] (4)

1a	d1odla_	A:
1b	d1odle_	E:
1c	d1odlf_	F:
1d	d1odlb_	B:
1e	d1odlc_	C:
1f	d1odld_	D:

Asymmetric/Biological Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: Rossmann fold (7312)

Homologous Superfamily: [code=3.40.50.1580, no name defined] (194)

Thermus thermophilus. Organism_taxid: 300852. Strain: hb8. (3)

1a	1odlA00	A:2-235
1b	1odlE00	E:2-235
1c	1odlF00	F:2-235
1d	1odlB00	B:2-235
1e	1odlC00	C:2-235
1f	1odlD00	D:2-235

Asymmetric/Biological Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: PUP (121)

Family: PNP_UDP_1 (121)

Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) (4)

1a	PNP_UDP_1-1odlF01	F:15-234
1b	PNP_UDP_1-1odlF02	F:15-234
1c	PNP_UDP_1-1odlF03	F:15-234
1d	PNP_UDP_1-1odlF04	F:15-234
1e	PNP_UDP_1-1odlF05	F:15-234
1f	PNP_UDP_1-1odlF06	F:15-234

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B,C,D,E,F (Q5SID9_THET8 | Q5SID9)

molecular function
	GO:0003824	catalytic activity	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
	GO:0016757	transferase activity, transferring glycosyl groups	Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor).
	GO:0016763	transferase activity, transferring pentosyl groups	Catalysis of the transfer of a pentosyl group from one compound (donor) to another (acceptor).
biological process
	GO:0009116	nucleoside metabolic process	The chemical reactions and pathways involving a nucleoside, a nucleobase linked to either beta-D-ribofuranose (a ribonucleoside) or 2-deoxy-beta-D-ribofuranose, (a deoxyribonucleoside), e.g. adenosine, guanosine, inosine, cytidine, uridine and deoxyadenosine, deoxyguanosine, deoxycytidine and thymidine (= deoxythymidine).

Asymmetric/Biological Unit
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	Cis Peptide Bonds
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	1odl
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		Orientation in Membranes	:	OPM
		Protein Surface	:	SURFACE
		Secondary Structure	:	DSSP (structure derived) \| HSSP (homology derived)
		Structural Genomics	:	GeneCensus
		Structural Neighbours	:	CE \| VAST
		Structure Classification	:	CATH \| Dali \| SCOP
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		Interatomic Contacts of Structural Units	:	CSU
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UniProtKB/TrEMBL
	Q5SID9_THET8 \| Q5SID9	:	1odi 1odj 1odk

1a69	PURINE NUCLEOSIDE PHOSPHORYLASE IN COMPLEX WITH FORMYCIN B AND SULPHATE (PHOSPHATE)
1a9o	BOVINE PURINE NUCLEOSIDE PHOSPHORYLASE COMPLEXED WITH PHOSPHATE
1a9p	BOVINE PURINE NUCLEOSIDE PHOSPHORYLASE COMPLEXED WITH 9-DEAZAINOSINE AND PHOSPHATE
1a9q	BOVINE PURINE NUCLEOSIDE PHOSPHORYLASE COMPLEXED WITH INOSINE
1a9r	BOVINE PURINE NUCLEOSIDE PHOSPHORYLASE COMPLEXED WITH HYPOXANTHINE AND SULFATE
1a9s	BOVINE PURINE NUCLEOSIDE PHOSPHORYLASE COMPLEXED WITH INOSINE AND SULFATE
1a9t	BOVINE PURINE NUCLEOSIDE PHOSPHORYLASE COMPLEXED WITH 9-DEAZAINOSINE AND PHOSPHATE
1b8n	PURINE NUCLEOSIDE PHOSPHORYLASE
1b8o	PURINE NUCLEOSIDE PHOSPHORYLASE
1c3x	PURINE NUCLEOSIDE PHOSPHORYLASE FROM CELLULOMONAS SP. IN COMPLEX WITH 8-IODO- GUANINE
1ecp	PURINE NUCLEOSIDE PHOSPHORYLASE
1fxu	PURINE NUCLEOSIDE PHOSPHORYLASE FROM CALF SPLEEN IN COMPLEXWITH N(7)-ACYCLOGUANOSINE INHIBITOR AND A PHOSPHATE ION
1g2o	CRYSTAL STRUCTURE OF PURINE NUCLEOSIDE PHOSPHORYLASE FROMMYCOBACTERIUM TUBERCULOSIS IN COMPLEX WITH A TRANSITION-STATE INHIBITOR
1k9s	PURINE NUCLEOSIDE PHOSPHORYLASE FROM E. COLI IN COMPLEXWITH FORMYCIN A DERIVATIVE AND PHOSPHATE
1odi	PURINE NUCLEOSIDE PHOSPHORYLASE FROM THERMUS THERMOPHILUS
1odj	PURINE NUCLEOSIDE PHOSPHORYLASE FROM THERMUS THERMOPHILUS
1odk	PURINE NUCLEOSIDE PHOSPHORYLASE FROM THERMUS THERMOPHILUS
1pbn	PURINE NUCLEOSIDE PHOSPHORYLASE
1qe5	PURINE NUCLEOSIDE PHOSPHORYLASE FROM CELLULOMONAS SP. IN COMPLEX WITH PHOSPHATE
1ula	PURINE NUCLEOSIDE PHOSPHORYLASE
1ulb	PURINE NUCLEOSIDE PHOSPHORYLASE COMPLEX WITH GUANINE
1vfn	PURINE NUCLEOSIDE PHOSPHORYLASE
3pnp	THE HIGH RESOLUTION CRYSTAL STRUCTURE OF BOVINE SPLEEN PURINE NUCLEOSIDE PHOSPHORYLASE IN COMPLEX FORMS WITH PHOSPHATE AND 9- DEAZAINOSINE
4pnp	THE HIGH RESOLUTION CRYSTAL STRUCTURE OF BOVINE SPLEEN PURINE NUCLEOSIDE PHOSPHORYLASE IN COMPLEX FORMS WITH PHOSPHATE AND 9- DEAZAINOSINE

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 20)

Sites (20, 20)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (1, 6)

CATH Domains (1, 6)

Pfam Domains (1, 6)

Gene Ontology (5, 5)

Visualization

Interactive Views

Still Images

Databases and Analysis Tools

Databases

Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File