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(-) Description

Title :  PURINE NUCLEOSIDE PHOSPHORYLASE
 
Authors :  C. Mao, S. E. Ealick
Date :  10 Jul 95  (Deposition) - 14 Nov 95  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (3x)
Keywords :  Purine Nucleoside Phosphorylase, Pentosyltransferase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  C. Mao, W. J. Cook, M. Zhou, A. A. Federov, S. C. Almo, S. E. Ealick
Calf Spleen Purine Nucleoside Phosphorylase Complexed With Substrates And Substrate Analogues.
Biochemistry V. 37 7135 1998
PubMed-ID: 9585525  |  Reference-DOI: 10.1021/BI9723919

(-) Compounds

Molecule 1 - PURINE NUCLEOSIDE PHOSPHORYLASE
    ChainsA
    EC Number2.4.2.1
    OrganSPLEEN
    Organism CommonCATTLE
    Organism ScientificBOS TAURUS
    Organism Taxid9913

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit A
Biological Unit 1 (3x)A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1PBN)

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1B1AUTHORPHE A:159 , PHE A:200 , GLU A:201 , ASN A:243BASE BINDING SITE
2P1AUTHORSER A:33 , HIS A:64 , ARG A:84 , HIS A:86 , ALA A:116 , SER A:220PHOSPHATE BINDING SITE

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1PBN)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Gly A:197 -Pro A:198

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1PBN)

(-) PROSITE Motifs  (1, 1)

Asymmetric Unit (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PNP_MTAP_2PS01240 Purine and other phosphorylases family 2 signature.PNPH_BOVIN79-120  1A:79-120
Biological Unit 1 (1, 3)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PNP_MTAP_2PS01240 Purine and other phosphorylases family 2 signature.PNPH_BOVIN79-120  3A:79-120

(-) Exons   (6, 6)

Asymmetric Unit (6, 6)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1ENSBTAT000000163461ENSBTAE00000133169chr10:26040769-26040670100PNPH_BOVIN1-33331A:1-3333
1.3ENSBTAT000000163463ENSBTAE00000420054chr10:26038796-26038627170PNPH_BOVIN33-90581A:33-9058
1.4ENSBTAT000000163464ENSBTAE00000408817chr10:26036665-26036562104PNPH_BOVIN90-124351A:90-12435
1.5ENSBTAT000000163465ENSBTAE00000427656chr10:26036357-26036182176PNPH_BOVIN125-183591A:125-18359
1.6ENSBTAT000000163466ENSBTAE00000404946chr10:26036090-26035900191PNPH_BOVIN183-247651A:183-24765
1.7ENSBTAT000000163467ENSBTAE00000133178chr10:26035106-26034471636PNPH_BOVIN247-318721A:247-28943

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:289
 aligned with PNPH_BOVIN | P55859 from UniProtKB/Swiss-Prot  Length:289

    Alignment length:289
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280         
           PNPH_BOVIN     1 MANGYTYEDYQDTAKWLLSHTEQRPQVAVICGSGLGGLVNKLTQAQTFDYSEIPNFPESTVPGHAGRLVFGILNGRACVMMQGRFHMYEGYPFWKVTFPVRVFRLLGVETLVVTNAAGGLNPNFEVGDIMLIRDHINLPGFSGENPLRGPNEERFGVRFPAMSDAYDRDMRQKAHSTWKQMGEQRELQEGTYVMLGGPNFETVAECRLLRNLGADAVGMSTVPEVIVARHCGLRVFGFSLITNKVIMDYESQGKANHEEVLEAGKQAAQKLEQFVSLLMASIPVSGHTG 289
               SCOP domains d1pbna_ A: Purine nucleoside phosphorylase, PNP                                                                                                                                                                                                                                                   SCOP domains
               CATH domains 1pbnA00 A:1-289  [code=3.40.50.1580, no name defined]                                                                                                                                                                                                                                             CATH domains
               Pfam domains -------------------------PNP_UDP_1-1pbnA01 A:26-280                                                                                                                                                                                                                                     --------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhhh........eeeee....hhhhhh....eeeehhh..............eeeeeee..eeeeeee....hhh...hhhh.hhhhhhhhh...eeeeeeeeee.........eeeeeeeeehhhhh.........................hhhhhhhhhhhhh.......eeeeeee........hhhhhhhhh....eee...hhhhhhhhh...eeeeeeeeeee.............hhh.......hhhhhhhhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------PNP_MTAP_2  PDB: A:79-120 UniProt: 79-120 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1  PDB: A:1-33            --------------------------------------------------------Exon 1.4  PDB: A:90-124            Exon 1.5  PDB: A:125-183 UniProt: 125-183                  ---------------------------------------------------------------Exon 1.7  PDB: A:247-289 UniProt: 247-318   Transcript 1 (1)
           Transcript 1 (2) --------------------------------Exon 1.3  PDB: A:33-90 UniProt: 33-90                     --------------------------------------------------------------------------------------------Exon 1.6  PDB: A:183-247 UniProt: 183-247                        ------------------------------------------ Transcript 1 (2)
                 1pbn A   1 MANGYTYEDYQDTAKWLLSHTEQRPQVAVICGSGLGGLVNKLTQAQTFDYSEIPNFPESTVPGHAGRLVFGILNGRACVMMQGRFHMYEGYPFWKVTFPVRVFRLLGVETLVVTNAAGGLNPNFEVGDIMLIRDHINLPGFSGENPLRGPNEERFGVRFPAMSDAYDRDMRQKAHSTWKQMGEQRELQEGTYVMLGGPNFETVAECRLLRNLGADAVGMSTVPEVIVARHCGLRVFGFSLITNKVIMDTESQGKANHEEVLEAGKQAAQKLEQFVSLLMASIPVSGHTG 289
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280         

   Legend:   → Mismatch (orange background)
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    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric Unit

(-) CATH Domains  (1, 1)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 1)

Asymmetric Unit
(-)
Clan: PUP (121)

(-) Gene Ontology  (10, 10)

Asymmetric Unit(hide GO term definitions)
Chain A   (PNPH_BOVIN | P55859)
molecular function
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0004731    purine-nucleoside phosphorylase activity    Catalysis of the reaction: purine nucleoside + phosphate = purine + alpha-D-ribose 1-phosphate.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
    GO:0016757    transferase activity, transferring glycosyl groups    Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor).
    GO:0016763    transferase activity, transferring pentosyl groups    Catalysis of the transfer of a pentosyl group from one compound (donor) to another (acceptor).
biological process
    GO:0006139    nucleobase-containing compound metabolic process    Any cellular metabolic process involving nucleobases, nucleosides, nucleotides and nucleic acids.
    GO:0009116    nucleoside metabolic process    The chemical reactions and pathways involving a nucleoside, a nucleobase linked to either beta-D-ribofuranose (a ribonucleoside) or 2-deoxy-beta-D-ribofuranose, (a deoxyribonucleoside), e.g. adenosine, guanosine, inosine, cytidine, uridine and deoxyadenosine, deoxyguanosine, deoxycytidine and thymidine (= deoxythymidine).
    GO:0043101    purine-containing compound salvage    Any process that generates a purine-containing compound, any nucleobase, nucleoside, nucleotide or nucleic acid that contains a purine base, from derivatives of them without de novo synthesis.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005856    cytoskeleton    Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PNPH_BOVIN | P558591a9o 1a9p 1a9q 1a9r 1a9s 1a9t 1b8n 1b8o 1fxu 1lv8 1lvu 1v48 1vfn 2ai1 2ai2 2ai3 2qpl 3fuc 3pnp 4pnp

(-) Related Entries Specified in the PDB File

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