1ODB - JenaLib

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Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Title :   THE CRYSTAL STRUCTURE OF HUMAN S100A12 - COPPER COMPLEX

Authors :   O. V. Moroz, A. A. Antson, S. J. Grist, N. J. Maitland, G. G. Dodson, K. S. W E. M. Lukanidin, I. B. Bronstein

Date :   15 Feb 03 (Deposition) - 12 Jun 03 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.19

Chains :   Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: C,D  (1x)
Biol. Unit 2: E,F  (1x)
Biol. Unit 3: A,B  (1x)

Keywords :   Metal-Binding Protein, Calcium-Binding Protein, S100 Protein, Ef-Hand, Calcium Binding, Host-Parasite Response (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   O. V. Moroz, A. A. Antson, S. J. Grist, N. J. Maitland, G. G. Dodson, K. S. Wilson, E. M. Lukanidin, I. B. Bronstein
Structure Of The Human S100A12-Copper Complex: Implications For Host-Parasite Defence
Acta Crystallogr. , Sect. D V. 59 859 2003
PubMed-ID: 12777802 | Reference-DOI: 10.1107/S0907444903004700
(for further references see the PDB file header)

Molecule 1 - CALGRANULIN C
	Cell	:	GRANULOCYTE
	Chains	:	A, B, C, D, E, F
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Other Details	:	CA2+ AND CU2+ BOUND FORM
	Synonym	:	S100A12, CAGC, P6, CGRP, NEUTROPHIL S100 PROTEIN, CALCIUM-BINDING PROTEIN IN AMNIOTIC FLUID 1, CAAF1
	Tissue	:	BLOOD

		1	2	3	4	5	6
Asymmetric Unit	:	A	B	C	D	E	F
Biological Unit 1 (1x)	:			C	D
Biological Unit 2 (1x)	:					E	F
Biological Unit 3 (1x)	:	A	B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (2, 18)

No.	Name	Count	Type	Full Name
1	CA	12	Ligand/Ion	CALCIUM ION
2	CU	6	Ligand/Ion	COPPER (II) ION

Biological Unit 1 (0, 0)

No.	Name	Count	Type	Full Name
1	CA	-1	Ligand/Ion	CALCIUM ION
2	CU	-1	Ligand/Ion	COPPER (II) ION

Biological Unit 2 (0, 0)

No.	Name	Count	Type	Full Name
1	CA	-1	Ligand/Ion	CALCIUM ION
2	CU	-1	Ligand/Ion	COPPER (II) ION

Biological Unit 3 (0, 0)

No.	Name	Count	Type	Full Name
1	CA	-1	Ligand/Ion	CALCIUM ION
2	CU	-1	Ligand/Ion	COPPER (II) ION

Asymmetric Unit (18, 18)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	HIS A:15 , HIS B:85 , HIS B:89 , GLU E:55 , GLN E:58	BINDING SITE FOR RESIDUE CU A1091
02	AC2	SOFTWARE	SER A:18 , LYS A:21 , HIS A:23 , THR A:26 , GLU A:31 , HOH A:2059	BINDING SITE FOR RESIDUE CA A1092
03	AC3	SOFTWARE	ASP A:61 , ASN A:63 , ASP A:65 , GLN A:67 , GLU A:72 , HOH A:2061	BINDING SITE FOR RESIDUE CA A1093
04	AC4	SOFTWARE	HIS A:85 , HIS A:89 , HIS B:15 , ASP B:25	BINDING SITE FOR RESIDUE CU B1091
05	AC5	SOFTWARE	SER B:18 , LYS B:21 , HIS B:23 , THR B:26 , GLU B:31 , HOH B:2026	BINDING SITE FOR RESIDUE CA B1092
06	AC6	SOFTWARE	ASP B:61 , ASN B:63 , ASP B:65 , GLN B:67 , GLU B:72 , HOH B:2059	BINDING SITE FOR RESIDUE CA B1093
07	AC7	SOFTWARE	HIS C:15 , ASP C:25 , HIS D:85 , HIS D:89	BINDING SITE FOR RESIDUE CU C1091
08	AC8	SOFTWARE	SER C:18 , LYS C:21 , HIS C:23 , THR C:26 , GLU C:31 , HOH C:2021	BINDING SITE FOR RESIDUE CA C1092
09	AC9	SOFTWARE	ASP C:61 , ASN C:63 , ASP C:65 , GLN C:67 , GLU C:72 , HOH C:2044	BINDING SITE FOR RESIDUE CA C1093
10	BC1	SOFTWARE	HIS C:85 , HIS C:89 , HIS D:15 , ASP D:25	BINDING SITE FOR RESIDUE CU D1091
11	BC2	SOFTWARE	SER D:18 , LYS D:21 , HIS D:23 , THR D:26 , GLU D:31 , HOH D:2049	BINDING SITE FOR RESIDUE CA D1092
12	BC3	SOFTWARE	ASP D:61 , ASN D:63 , ASP D:65 , GLN D:67 , GLU D:72 , HOH D:2050	BINDING SITE FOR RESIDUE CA D1093
13	BC4	SOFTWARE	HIS E:15 , ASP E:25 , HIS F:85 , HIS F:89	BINDING SITE FOR RESIDUE CU E1091
14	BC5	SOFTWARE	SER E:18 , LYS E:21 , HIS E:23 , THR E:26 , GLU E:31 , HOH E:2055	BINDING SITE FOR RESIDUE CA E1092
15	BC6	SOFTWARE	ASP E:61 , ASN E:63 , ASP E:65 , GLN E:67 , GLU E:72 , HOH E:2059	BINDING SITE FOR RESIDUE CA E1093
16	BC7	SOFTWARE	HIS E:85 , HIS E:89 , HIS F:15 , ASP F:25	BINDING SITE FOR RESIDUE CU F1091
17	BC8	SOFTWARE	SER F:18 , LYS F:21 , HIS F:23 , THR F:26 , GLU F:31	BINDING SITE FOR RESIDUE CA F1092
18	BC9	SOFTWARE	ASP F:61 , ASN F:63 , ASP F:65 , GLN F:67 , GLU F:72 , HOH F:2021	BINDING SITE FOR RESIDUE CA F1093

(no "SS Bond" information available for 1ODB)

(no "Cis Peptide Bond" information available for 1ODB)

(no "SAP(SNP)/Variant" information available for 1ODB)

Asymmetric Unit (2, 12)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	EF_HAND_2	PS50222	EF-hand calcium-binding domain profile.	S10AC_HUMAN	49-84	6	A:48-83 B:48-83 C:48-83 D:48-83 E:48-83 F:48-83
2	S100_CABP	PS00303	S-100/ICaBP type calcium binding protein signature.	S10AC_HUMAN	57-78	6	A:56-77 B:56-77 C:56-77 D:56-77 E:56-77 F:56-77

Biological Unit 1 (2, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	EF_HAND_2	PS50222	EF-hand calcium-binding domain profile.	S10AC_HUMAN	49-84	2	- - C:48-83 D:48-83 - -
2	S100_CABP	PS00303	S-100/ICaBP type calcium binding protein signature.	S10AC_HUMAN	57-78	2	- - C:56-77 D:56-77 - -

Biological Unit 2 (2, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	EF_HAND_2	PS50222	EF-hand calcium-binding domain profile.	S10AC_HUMAN	49-84	2	- - - - E:48-83 F:48-83
2	S100_CABP	PS00303	S-100/ICaBP type calcium binding protein signature.	S10AC_HUMAN	57-78	2	- - - - E:56-77 F:56-77

Biological Unit 3 (2, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	EF_HAND_2	PS50222	EF-hand calcium-binding domain profile.	S10AC_HUMAN	49-84	2	A:48-83 B:48-83 - - - -
2	S100_CABP	PS00303	S-100/ICaBP type calcium binding protein signature.	S10AC_HUMAN	57-78	2	A:56-77 B:56-77 - - - -

Asymmetric Unit (2, 12)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.1a	ENST00000368737	1a	ENSE00001935189	chr1:153348125-153348028	98	S10AC_HUMAN	-	0	0	-	-
1.2	ENST00000368737	2	ENSE00001072568	chr1:153347088-153346931	158	S10AC_HUMAN	1-46	46	6	A:0-45 B:0-45 C:0-45 D:0-45 E:0-45 F:0-45	46 46 46 46 46 46
1.4a	ENST00000368737	4a	ENSE00001447874	chr1:153346443-153346184	260	S10AC_HUMAN	47-92	46	6	A:46-90 B:46-90 C:46-90 D:46-90 E:46-90 F:46-89	45 45 45 45 45 44

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:91
 aligned with S10AC_HUMAN | P80511 from UniProtKB/Swiss-Prot  Length:92

    Alignment length:91
                                    10        20        30        40        50        60        70        80        90 
           S10AC_HUMAN    1 MTKLEEHLEGIVNIFHQYSVRKGHFDTLSKGELKQLLTKELANTIKNIKDKAVIDEIFQGLDANQDEQVDFQEFISLVAIALKAAHYHTHK 91
               SCOP domains d1odba_ A: Calcyclin (S100)                                                                 SCOP domains
               CATH domains 1odbA00 A:0-90 EF-hand                                                                      CATH domains
               Pfam domains ------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhh........hhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ------------------------------------------------EF_HAND_2  PDB: A:48-83             ------- PROSITE (1)
                PROSITE (2) --------------------------------------------------------S100_CABP  PDB: A:56-7------------- PROSITE (2)
               Transcript 1 Exon 1.2  PDB: A:0-45 UniProt: 1-46           Exon 1.4a  PDB: A:46-90 UniProt: 47-92        Transcript 1
                  1odb A  0 STKLEEHLEGIVNIFHQYSVRKGHFDTLSKGELKQLLTKELANTIKNIKDKAVIDEIFQGLDANQDEQVDFQEFISLVAIALKAAHYHTHK 90
                                     9        19        29        39        49        59        69        79        89

Chain B from PDB  Type:PROTEIN  Length:91
 aligned with S10AC_HUMAN | P80511 from UniProtKB/Swiss-Prot  Length:92

    Alignment length:91
                                    10        20        30        40        50        60        70        80        90 
           S10AC_HUMAN    1 MTKLEEHLEGIVNIFHQYSVRKGHFDTLSKGELKQLLTKELANTIKNIKDKAVIDEIFQGLDANQDEQVDFQEFISLVAIALKAAHYHTHK 91
               SCOP domains d1odbb_ B: Calcyclin (S100)                                                                 SCOP domains
               CATH domains 1odbB00 B:0-90 EF-hand                                                                      CATH domains
               Pfam domains ------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhh........hhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ------------------------------------------------EF_HAND_2  PDB: B:48-83             ------- PROSITE (1)
                PROSITE (2) --------------------------------------------------------S100_CABP  PDB: B:56-7------------- PROSITE (2)
               Transcript 1 Exon 1.2  PDB: B:0-45 UniProt: 1-46           Exon 1.4a  PDB: B:46-90 UniProt: 47-92        Transcript 1
                  1odb B  0 STKLEEHLEGIVNIFHQYSVRKGHFDTLSKGELKQLLTKELANTIKNIKDKAVIDEIFQGLDANQDEQVDFQEFISLVAIALKAAHYHTHK 90
                                     9        19        29        39        49        59        69        79        89

Chain C from PDB  Type:PROTEIN  Length:91
 aligned with S10AC_HUMAN | P80511 from UniProtKB/Swiss-Prot  Length:92

    Alignment length:91
                                    10        20        30        40        50        60        70        80        90 
           S10AC_HUMAN    1 MTKLEEHLEGIVNIFHQYSVRKGHFDTLSKGELKQLLTKELANTIKNIKDKAVIDEIFQGLDANQDEQVDFQEFISLVAIALKAAHYHTHK 91
               SCOP domains d1odbc_ C: Calcyclin (S100)                                                                 SCOP domains
               CATH domains 1odbC00 C:0-90 EF-hand                                                                      CATH domains
               Pfam domains ------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhh........hhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ------------------------------------------------EF_HAND_2  PDB: C:48-83             ------- PROSITE (1)
                PROSITE (2) --------------------------------------------------------S100_CABP  PDB: C:56-7------------- PROSITE (2)
               Transcript 1 Exon 1.2  PDB: C:0-45 UniProt: 1-46           Exon 1.4a  PDB: C:46-90 UniProt: 47-92        Transcript 1
                  1odb C  0 STKLEEHLEGIVNIFHQYSVRKGHFDTLSKGELKQLLTKELANTIKNIKDKAVIDEIFQGLDANQDEQVDFQEFISLVAIALKAAHYHTHK 90
                                     9        19        29        39        49        59        69        79        89

Chain D from PDB  Type:PROTEIN  Length:91
 aligned with S10AC_HUMAN | P80511 from UniProtKB/Swiss-Prot  Length:92

    Alignment length:91
                                    10        20        30        40        50        60        70        80        90 
           S10AC_HUMAN    1 MTKLEEHLEGIVNIFHQYSVRKGHFDTLSKGELKQLLTKELANTIKNIKDKAVIDEIFQGLDANQDEQVDFQEFISLVAIALKAAHYHTHK 91
               SCOP domains d1odbd_ D: Calcyclin (S100)                                                                 SCOP domains
               CATH domains 1odbD00 D:0-90 EF-hand                                                                      CATH domains
               Pfam domains ------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhh.........hhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ------------------------------------------------EF_HAND_2  PDB: D:48-83             ------- PROSITE (1)
                PROSITE (2) --------------------------------------------------------S100_CABP  PDB: D:56-7------------- PROSITE (2)
               Transcript 1 Exon 1.2  PDB: D:0-45 UniProt: 1-46           Exon 1.4a  PDB: D:46-90 UniProt: 47-92        Transcript 1
                  1odb D  0 STKLEEHLEGIVNIFHQYSVRKGHFDTLSKGELKQLLTKELANTIKNIKDKAVIDEIFQGLDANQDEQVDFQEFISLVAIALKAAHYHTHK 90
                                     9        19        29        39        49        59        69        79        89

Chain E from PDB  Type:PROTEIN  Length:91
 aligned with S10AC_HUMAN | P80511 from UniProtKB/Swiss-Prot  Length:92

    Alignment length:91
                                    10        20        30        40        50        60        70        80        90 
           S10AC_HUMAN    1 MTKLEEHLEGIVNIFHQYSVRKGHFDTLSKGELKQLLTKELANTIKNIKDKAVIDEIFQGLDANQDEQVDFQEFISLVAIALKAAHYHTHK 91
               SCOP domains d1odbe_ E: Calcyclin (S100)                                                                 SCOP domains
               CATH domains 1odbE00 E:0-90 EF-hand                                                                      CATH domains
               Pfam domains ------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhh......eehhhhhhhhhhhhh........hhhhhhhhhhhhh......eehhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ------------------------------------------------EF_HAND_2  PDB: E:48-83             ------- PROSITE (1)
                PROSITE (2) --------------------------------------------------------S100_CABP  PDB: E:56-7------------- PROSITE (2)
               Transcript 1 Exon 1.2  PDB: E:0-45 UniProt: 1-46           Exon 1.4a  PDB: E:46-90 UniProt: 47-92        Transcript 1
                  1odb E  0 STKLEEHLEGIVNIFHQYSVRKGHFDTLSKGELKQLLTKELANTIKNIKDKAVIDEIFQGLDANQDEQVDFQEFISLVAIALKAAHYHTHK 90
                                     9        19        29        39        49        59        69        79        89

Chain F from PDB  Type:PROTEIN  Length:90
 aligned with S10AC_HUMAN | P80511 from UniProtKB/Swiss-Prot  Length:92

    Alignment length:90
                                    10        20        30        40        50        60        70        80        90
           S10AC_HUMAN    1 MTKLEEHLEGIVNIFHQYSVRKGHFDTLSKGELKQLLTKELANTIKNIKDKAVIDEIFQGLDANQDEQVDFQEFISLVAIALKAAHYHTH 90
               SCOP domains d1odbf_ F: Calcyclin (S100)                                                                SCOP domains
               CATH domains 1odbF00 F:0-89 EF-hand                                                                     CATH domains
           Pfam domains (1) ---S_100-1odbF01 F:3-46                        ------------------------------------------- Pfam domains (1)
           Pfam domains (2) ---S_100-1odbF02 F:3-46                        ------------------------------------------- Pfam domains (2)
           Pfam domains (3) ---S_100-1odbF03 F:3-46                        ------------------------------------------- Pfam domains (3)
           Pfam domains (4) ---S_100-1odbF04 F:3-46                        ------------------------------------------- Pfam domains (4)
           Pfam domains (5) ---S_100-1odbF05 F:3-46                        ------------------------------------------- Pfam domains (5)
           Pfam domains (6) ---S_100-1odbF06 F:3-46                        ------------------------------------------- Pfam domains (6)
         Sec.struct. author .hhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhh........hhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (1) ------------------------------------------------EF_HAND_2  PDB: F:48-83             ------ PROSITE (1)
                PROSITE (2) --------------------------------------------------------S100_CABP  PDB: F:56-7------------ PROSITE (2)
               Transcript 1 Exon 1.2  PDB: F:0-45 UniProt: 1-46           Exon 1.4a  PDB: F:46-89 UniProt: 47-92       Transcript 1
                  1odb F  0 STKLEEHLEGIVNIFHQYSVRKGHFDTLSKGELKQLLTKELANTIKNIKDKAVIDEIFQGLDANQDEQVDFQEFISLVAIALKAAHYHTH 89
                                     9        19        29        39        49        59        69        79        89

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All alpha proteins (14657)

Fold: EF Hand-like (739)

Superfamily: EF-hand (657)

Family: S100 proteins (101)

Protein domain: Calcyclin (S100) (69)

Human (Homo sapiens), calgranulin C, s100a12 [TaxId: 9606] (3)

1a	d1odba_	A:
1b	d1odbb_	B:
1c	d1odbc_	C:
1d	d1odbd_	D:
1e	d1odbe_	E:
1f	d1odbf_	F:

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Mainly Alpha (13335)

Architecture: Orthogonal Bundle (10391)

Topology: Recoverin; domain 1 (474)

Homologous Superfamily: EF-hand (412)

Human (Homo sapiens) (106)

1a	1odbA00	A:0-90
1b	1odbB00	B:0-90
1c	1odbC00	C:0-90
1d	1odbD00	D:0-90
1e	1odbE00	E:0-90
1f	1odbF00	F:0-89

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: EF_hand (270)

Family: S_100 (63)

Homo sapiens (Human) (41)

1a	S_100-1odbF01	F:3-46
1b	S_100-1odbF02	F:3-46
1c	S_100-1odbF03	F:3-46
1d	S_100-1odbF04	F:3-46
1e	S_100-1odbF05	F:3-46
1f	S_100-1odbF06	F:3-46

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D,E,F (S10AC_HUMAN | P80511)

molecular function
	GO:0050786	RAGE receptor binding	Interacting selectively and non-covalently with the RAGE receptor, the receptor for advanced glycation end-products.
	GO:0005509	calcium ion binding	Interacting selectively and non-covalently with calcium ions (Ca2+).
	GO:0005507	copper ion binding	Interacting selectively and non-covalently with copper (Cu) ions.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
	GO:0008270	zinc ion binding	Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
	GO:0050663	cytokine secretion	The regulated release of cytokines from a cell. Cytokines are any of a group of proteins that function to control the survival, growth and differentiation of tissues and cells, and which have autocrine and paracrine activity.
	GO:0042742	defense response to bacterium	Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism.
	GO:0050832	defense response to fungus	Reactions triggered in response to the presence of a fungus that act to protect the cell or organism.
	GO:0002376	immune system process	Any process involved in the development or functioning of the immune system, an organismal system for calibrated responses to potential internal or invasive threats.
	GO:0006954	inflammatory response	The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages.
	GO:0045087	innate immune response	Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens.
	GO:0031640	killing of cells of other organism	Any process in an organism that results in the killing of cells of another organism, including in some cases the death of the other organism. Killing here refers to the induction of death in one cell by another cell, not cell-autonomous death due to internal or other environmental conditions.
	GO:0045576	mast cell activation	The change in morphology and behavior of a mast cell resulting from exposure to a cytokine, chemokine, soluble factor, or to (at least in mammals) an antigen which the mast cell has specifically bound via IgE bound to Fc-epsilonRI receptors.
	GO:0002548	monocyte chemotaxis	The movement of a monocyte in response to an external stimulus.
	GO:0030593	neutrophil chemotaxis	The directed movement of a neutrophil cell, the most numerous polymorphonuclear leukocyte found in the blood, in response to an external stimulus, usually an infection or wounding.
	GO:0043123	positive regulation of I-kappaB kinase/NF-kappaB signaling	Any process that activates or increases the frequency, rate or extent of I-kappaB kinase/NF-kappaB signaling.
	GO:0043406	positive regulation of MAP kinase activity	Any process that activates or increases the frequency, rate or extent of MAP kinase activity.
	GO:0051092	positive regulation of NF-kappaB transcription factor activity	Any process that activates or increases the frequency, rate or extent of activity of the transcription factor NF-kappaB.
	GO:0050729	positive regulation of inflammatory response	Any process that activates or increases the frequency, rate or extent of the inflammatory response.
	GO:0006805	xenobiotic metabolic process	The chemical reactions and pathways involving a xenobiotic compound, a compound foreign to living organisms. Used of chemical compounds, e.g. a xenobiotic chemical, such as a pesticide.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0005856	cytoskeleton	Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles.
	GO:0005829	cytosol	The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
	GO:0005576	extracellular region	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0005634	nucleus	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
	GO:0005886	plasma membrane	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

Asymmetric Unit
	Complete Structure
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UniProtKB/Swiss-Prot
	S10AC_HUMAN \| P80511	:	1e8a 1gqm 2m9g 2wc8 2wcb 2wce 2wcf

1e8a	THE THREE-DIMENSIONAL STRUCTURE OF HUMAN S100A12
1gqm	THE STRUCTURE OF S100A12 IN A HEXAMERIC FORM AND ITS PROPOSED ROLE IN RECEPTOR SIGNALLING

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 18)

Sites (18, 18)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (2, 12)

Exons (2, 12)

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SCOP Domains (1, 6)

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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File