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1ODB
Biol. Unit 2
Info
Asym.Unit (102 KB)
Biol.Unit 1 (33 KB)
Biol.Unit 2 (33 KB)
Biol.Unit 3 (34 KB)
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(1)
Title
:
THE CRYSTAL STRUCTURE OF HUMAN S100A12 - COPPER COMPLEX
Authors
:
O. V. Moroz, A. A. Antson, S. J. Grist, N. J. Maitland, G. G. Dodson, K. S. W E. M. Lukanidin, I. B. Bronstein
Date
:
15 Feb 03 (Deposition) - 12 Jun 03 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.19
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: C,D (1x)
Biol. Unit 2: E,F (1x)
Biol. Unit 3: A,B (1x)
Keywords
:
Metal-Binding Protein, Calcium-Binding Protein, S100 Protein, Ef-Hand, Calcium Binding, Host-Parasite Response
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
O. V. Moroz, A. A. Antson, S. J. Grist, N. J. Maitland, G. G. Dodson, K. S. Wilson, E. M. Lukanidin, I. B. Bronstein
Structure Of The Human S100A12-Copper Complex: Implications For Host-Parasite Defence
Acta Crystallogr. , Sect. D V. 59 859 2003
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
1f: CALCIUM ION (CAf)
1g: CALCIUM ION (CAg)
1h: CALCIUM ION (CAh)
1i: CALCIUM ION (CAi)
1j: CALCIUM ION (CAj)
1k: CALCIUM ION (CAk)
1l: CALCIUM ION (CAl)
2a: COPPER (II) ION (CUa)
2b: COPPER (II) ION (CUb)
2c: COPPER (II) ION (CUc)
2d: COPPER (II) ION (CUd)
2e: COPPER (II) ION (CUe)
2f: COPPER (II) ION (CUf)
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Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: BC4 (SOFTWARE)
3: BC5 (SOFTWARE)
4: BC6 (SOFTWARE)
5: BC7 (SOFTWARE)
6: BC8 (SOFTWARE)
7: BC9 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:15 , HIS B:85 , HIS B:89 , GLU E:55 , GLN E:58
BINDING SITE FOR RESIDUE CU A1091
2
BC4
SOFTWARE
HIS E:15 , ASP E:25 , HIS F:85 , HIS F:89
BINDING SITE FOR RESIDUE CU E1091
3
BC5
SOFTWARE
SER E:18 , LYS E:21 , HIS E:23 , THR E:26 , GLU E:31 , HOH E:2055
BINDING SITE FOR RESIDUE CA E1092
4
BC6
SOFTWARE
ASP E:61 , ASN E:63 , ASP E:65 , GLN E:67 , GLU E:72 , HOH E:2059
BINDING SITE FOR RESIDUE CA E1093
5
BC7
SOFTWARE
HIS E:85 , HIS E:89 , HIS F:15 , ASP F:25
BINDING SITE FOR RESIDUE CU F1091
6
BC8
SOFTWARE
SER F:18 , LYS F:21 , HIS F:23 , THR F:26 , GLU F:31
BINDING SITE FOR RESIDUE CA F1092
7
BC9
SOFTWARE
ASP F:61 , ASN F:63 , ASP F:65 , GLN F:67 , GLU F:72 , HOH F:2021
BINDING SITE FOR RESIDUE CA F1093
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: EF_HAND_2 (E:48-83,F:48-83)
2: S100_CABP (E:56-77,F:56-77)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
EF_HAND_2
PS50222
EF-hand calcium-binding domain profile.
S10AC_HUMAN
49-84
2
-
-
-
-
E:48-83
F:48-83
2
S100_CABP
PS00303
S-100/ICaBP type calcium binding protein signature.
S10AC_HUMAN
57-78
2
-
-
-
-
E:56-77
F:56-77
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d1odba_ (A:)
1b: SCOP_d1odbb_ (B:)
1c: SCOP_d1odbc_ (C:)
1d: SCOP_d1odbd_ (D:)
1e: SCOP_d1odbe_ (E:)
1f: SCOP_d1odbf_ (F:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
EF Hand-like
(739)
Superfamily
:
EF-hand
(657)
Family
:
S100 proteins
(101)
Protein domain
:
Calcyclin (S100)
(69)
Human (Homo sapiens), calgranulin C, s100a12 [TaxId: 9606]
(3)
1a
d1odba_
A:
1b
d1odbb_
B:
1c
d1odbc_
C:
1d
d1odbd_
D:
1e
d1odbe_
E:
1f
d1odbf_
F:
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CATH Domains
(1, 6)
Info
all CATH domains
1a: CATH_1odbA00 (A:0-90)
1b: CATH_1odbB00 (B:0-90)
1c: CATH_1odbC00 (C:0-90)
1d: CATH_1odbD00 (D:0-90)
1e: CATH_1odbE00 (E:0-90)
1f: CATH_1odbF00 (F:0-89)
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Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Recoverin; domain 1
(474)
Homologous Superfamily
:
EF-hand
(412)
Human (Homo sapiens)
(106)
1a
1odbA00
A:0-90
1b
1odbB00
B:0-90
1c
1odbC00
C:0-90
1d
1odbD00
D:0-90
1e
1odbE00
E:0-90
1f
1odbF00
F:0-89
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Pfam Domains
(1, 6)
Info
all PFAM domains
1a: PFAM_S_100_1odbF01 (F:3-46)
1b: PFAM_S_100_1odbF02 (F:3-46)
1c: PFAM_S_100_1odbF03 (F:3-46)
1d: PFAM_S_100_1odbF04 (F:3-46)
1e: PFAM_S_100_1odbF05 (F:3-46)
1f: PFAM_S_100_1odbF06 (F:3-46)
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Clan
:
EF_hand
(270)
Family
:
S_100
(63)
Homo sapiens (Human)
(41)
1a
S_100-1odbF01
F:3-46
1b
S_100-1odbF02
F:3-46
1c
S_100-1odbF03
F:3-46
1d
S_100-1odbF04
F:3-46
1e
S_100-1odbF05
F:3-46
1f
S_100-1odbF06
F:3-46
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Asym.Unit (102 KB)
Header - Asym.Unit
Biol.Unit 1 (33 KB)
Header - Biol.Unit 1
Biol.Unit 2 (33 KB)
Header - Biol.Unit 2
Biol.Unit 3 (34 KB)
Header - Biol.Unit 3
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