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(-) Description

Title :  THE STRUCTURE OF S100A12 IN A HEXAMERIC FORM
 
Authors :  O. V. Moroz, A. A. Antson, E. G. Dodson, H. J. Burrel, S. J. Grist, R. M. Llo N. J. Maitland, G. G. Dodson, K. S. Wilson, E. Lukanidin, I. B. Bronstei
Date :  26 Nov 01  (Deposition) - 28 Feb 02  (Release) - 28 Sep 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.70
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1:  A,B,C,D,E,F  (1x)
Biol. Unit 2:  G,H,I,J,K,L  (1x)
Keywords :  Antimicrobial Protein, S100A12, S100 Protein Family, Ef-Hand, Calcium Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  O. V. Moroz, A. A. Antson, E. J. Dodson, H. J. Burrell, S. J. Grist, R. M. Lloyd, N. J. Maitland, G. G. Dodson, K. S. Wilson, E. Lukanidin, I. B. Bronstein
The Structure Of S100A12 In A Hexameric Form And Its Proposed Role In Receptor Signalling
Acta Crystallogr. , Sect. D V. 58 407 2002
PubMed-ID: 11856825  |  Reference-DOI: 10.1107/S0907444901021278
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - CALGRANULIN C
    Cell: GRANULOCYTE
    Chains: A, B, C, D, E, F, G, H, I, J, K, L
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: S100A12, CAGC, CGRP, NEUTROPHIL S100 PROTEIN, CALCIUM-BINDING PROTEIN IN AMNIOTIC FLUID 1, CAAF1
    Tissue: BLOOD

 Structural Features

(-) Chains, Units

  123456789101112
Asymmetric Unit : ABCDEFGHIJKL
Biological Unit 1 (1x): ABCDEF      
Biological Unit 2 (1x):       GHIJKL

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 36)

Asymmetric Unit (1, 36)
No.NameCountTypeFull Name
1CA36Ligand/IonCALCIUM ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION

(-) Sites  (36, 36)

Asymmetric Unit (36, 36)
No.NameEvidenceResiduesDescription
01AC1SOFTWARESER A:18 , LYS A:21 , HIS A:23 , THR A:26 , GLU A:31BINDING SITE FOR RESIDUE CA A1088
02AC2SOFTWAREASP A:61 , ASN A:63 , ASP A:65 , GLN A:67 , GLU A:72BINDING SITE FOR RESIDUE CA A1089
03AC3SOFTWAREGLN A:58 , GLN A:64 , GLU D:55BINDING SITE FOR RESIDUE CA A1090
04AC4SOFTWARESER B:18 , LYS B:21 , HIS B:23 , THR B:26 , GLU B:31BINDING SITE FOR RESIDUE CA B1089
05AC5SOFTWAREASP B:61 , ASN B:63 , ASP B:65 , GLN B:67 , GLU B:72 , HOH B:2001BINDING SITE FOR RESIDUE CA B1090
06AC6SOFTWAREGLN B:58 , GLN B:64 , GLU F:55BINDING SITE FOR RESIDUE CA B1091
07AC7SOFTWAREGLU B:55 , GLN C:58 , GLN C:64BINDING SITE FOR RESIDUE CA C1088
08AC8SOFTWARESER C:18 , LYS C:21 , HIS C:23 , THR C:26 , GLU C:31BINDING SITE FOR RESIDUE CA C1089
09AC9SOFTWAREASP C:61 , ASN C:63 , ASP C:65 , GLN C:67 , GLU C:72BINDING SITE FOR RESIDUE CA C1090
10BC1SOFTWAREGLU C:55 , GLN F:58 , GLN F:64BINDING SITE FOR RESIDUE CA C1091
11BC2SOFTWARESER D:18 , LYS D:21 , HIS D:23 , THR D:26 , GLU D:31BINDING SITE FOR RESIDUE CA D1088
12BC3SOFTWAREASP D:61 , ASN D:63 , ASP D:65 , GLN D:67 , GLU D:72BINDING SITE FOR RESIDUE CA D1089
13BC4SOFTWAREGLU A:55 , GLN E:58 , GLN E:64BINDING SITE FOR RESIDUE CA E1088
14BC5SOFTWARESER E:18 , LYS E:21 , HIS E:23 , THR E:26 , GLU E:31BINDING SITE FOR RESIDUE CA E1089
15BC6SOFTWAREASP E:61 , ASN E:63 , ASP E:65 , GLN E:67 , GLU E:72 , HOH E:2002BINDING SITE FOR RESIDUE CA E1090
16BC7SOFTWAREGLN D:58 , GLN D:64 , GLU E:55BINDING SITE FOR RESIDUE CA E1091
17BC8SOFTWARESER F:18 , LYS F:21 , HIS F:23 , THR F:26 , GLU F:31BINDING SITE FOR RESIDUE CA F1088
18BC9SOFTWAREASP F:61 , ASN F:63 , ASP F:65 , GLN F:67 , GLU F:72BINDING SITE FOR RESIDUE CA F1089
19CC1SOFTWARESER G:18 , LYS G:21 , HIS G:23 , THR G:26 , GLU G:31BINDING SITE FOR RESIDUE CA G1088
20CC2SOFTWAREASP G:61 , ASN G:63 , ASP G:65 , GLN G:67 , GLU G:72BINDING SITE FOR RESIDUE CA G1089
21CC3SOFTWAREGLN G:58 , GLN G:64 , GLU I:55BINDING SITE FOR RESIDUE CA G1090
22CC4SOFTWARESER H:18 , LYS H:21 , HIS H:23 , THR H:26 , GLU H:31BINDING SITE FOR RESIDUE CA H1089
23CC5SOFTWAREASP H:61 , ASN H:63 , ASP H:65 , GLN H:67 , GLU H:72BINDING SITE FOR RESIDUE CA H1090
24CC6SOFTWAREGLN H:58 , GLN H:64 , GLU L:55BINDING SITE FOR RESIDUE CA H1091
25CC7SOFTWARESER I:18 , LYS I:21 , HIS I:23 , THR I:26 , GLU I:31BINDING SITE FOR RESIDUE CA I1088
26CC8SOFTWAREASP I:61 , ASN I:63 , ASP I:65 , GLN I:67 , GLU I:72BINDING SITE FOR RESIDUE CA I1089
27CC9SOFTWAREGLU H:55 , GLN J:58 , GLN J:64BINDING SITE FOR RESIDUE CA J1088
28DC1SOFTWARESER J:18 , LYS J:21 , HIS J:23 , THR J:26 , GLU J:31BINDING SITE FOR RESIDUE CA J1089
29DC2SOFTWAREASP J:61 , ASN J:63 , ASP J:65 , GLN J:67 , GLU J:72 , HOH J:2001BINDING SITE FOR RESIDUE CA J1090
30DC3SOFTWAREGLU J:55 , GLN L:58 , GLN L:64BINDING SITE FOR RESIDUE CA J1091
31DC4SOFTWAREGLU G:55 , GLN K:58 , GLN K:64 , HOH K:2002BINDING SITE FOR RESIDUE CA K1088
32DC5SOFTWARESER K:18 , LYS K:21 , HIS K:23 , THR K:26 , GLU K:31BINDING SITE FOR RESIDUE CA K1089
33DC6SOFTWAREASP K:61 , ASN K:63 , ASP K:65 , GLN K:67 , GLU K:72BINDING SITE FOR RESIDUE CA K1090
34DC7SOFTWAREGLN I:58 , GLN I:64 , GLU K:55BINDING SITE FOR RESIDUE CA K1091
35DC8SOFTWARESER L:18 , LYS L:21 , HIS L:23 , THR L:26 , GLU L:31BINDING SITE FOR RESIDUE CA L1087
36DC9SOFTWAREASP L:61 , ASN L:63 , ASP L:65 , GLN L:67 , GLU L:72BINDING SITE FOR RESIDUE CA L1088

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1GQM)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1GQM)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1GQM)

(-) PROSITE Motifs  (2, 24)

Asymmetric Unit (2, 24)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1EF_HAND_2PS50222 EF-hand calcium-binding domain profile.S10AC_HUMAN49-84
 
 
 
 
 
 
 
 
 
 
 		  12A:48-83
B:48-83
C:48-83
D:48-83
E:48-83
F:48-83
G:48-83
H:48-83
I:48-83
J:48-83
K:48-83
L:48-83
2S100_CABPPS00303 S-100/ICaBP type calcium binding protein signature.S10AC_HUMAN57-78
 
 
 
 
 
 
 
 
 
 
 		  12A:56-77
B:56-77
C:56-77
D:56-77
E:56-77
F:56-77
G:56-77
H:56-77
I:56-77
J:56-77
K:56-77
L:56-77
Biological Unit 1 (2, 12)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1EF_HAND_2PS50222 EF-hand calcium-binding domain profile.S10AC_HUMAN49-84
 
 
 
 
 
 
 
 
 
 
 		  6A:48-83
B:48-83
C:48-83
D:48-83
E:48-83
F:48-83
-
-
-
-
-
-
2S100_CABPPS00303 S-100/ICaBP type calcium binding protein signature.S10AC_HUMAN57-78
 
 
 
 
 
 
 
 
 
 
 		  6A:56-77
B:56-77
C:56-77
D:56-77
E:56-77
F:56-77
-
-
-
-
-
-
Biological Unit 2 (2, 12)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1EF_HAND_2PS50222 EF-hand calcium-binding domain profile.S10AC_HUMAN49-84
 
 
 
 
 
 
 
 
 
 
 		  6-
-
-
-
-
-
G:48-83
H:48-83
I:48-83
J:48-83
K:48-83
L:48-83
2S100_CABPPS00303 S-100/ICaBP type calcium binding protein signature.S10AC_HUMAN57-78
 
 
 
 
 
 
 
 
 
 
 		  6-
-
-
-
-
-
G:56-77
H:56-77
I:56-77
J:56-77
K:56-77
L:56-77

(-) Exons   (2, 24)

Asymmetric Unit (2, 24)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1aENST000003687371aENSE00001935189chr1:153348125-15334802898S10AC_HUMAN-00--
1.2ENST000003687372ENSE00001072568chr1:153347088-153346931158S10AC_HUMAN1-464612A:1-45
B:1-45
C:1-45
D:1-45
E:1-45
F:1-45
G:1-45
H:1-45
I:1-45
J:1-45
K:1-45
L:1-45		45
45
45
45
45
45
45
45
45
45
45
45
1.4aENST000003687374aENSE00001447874chr1:153346443-153346184260S10AC_HUMAN47-924612A:46-87
B:46-88
C:46-87
D:46-87
E:46-87
F:46-87
G:46-87
H:46-88
I:46-87
J:46-87
K:46-87
L:46-86		42
43
42
42
42
42
42
43
42
42
42
41

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:87
 aligned with S10AC_HUMAN | P80511 from UniProtKB/Swiss-Prot  Length:92

    Alignment length:87
                                    11        21        31        41        51        61        71        81       
           S10AC_HUMAN    2 TKLEEHLEGIVNIFHQYSVRKGHFDTLSKGELKQLLTKELANTIKNIKDKAVIDEIFQGLDANQDEQVDFQEFISLVAIALKAAHYH 88
               SCOP domains d1gqma_ A: Calcyclin (S100)                                                             SCOP domains
               CATH domains 1gqmA00 A:1-87 EF-hand                                                                  CATH domains
               Pfam domains --------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhh......eehhhhhhhhhhhhh........hhhhhhhhhhhhh......eehhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -----------------------------------------------EF_HAND_2  PDB: A:48-83             ---- PROSITE (1)
                PROSITE (2) -------------------------------------------------------S100_CABP  PDB: A:56-7---------- PROSITE (2)
               Transcript 1 Exon 1.2  PDB: A:1-45 UniProt: 1-46          Exon 1.4a  PDB: A:46-87 UniProt: 47-92     Transcript 1
                  1gqm A  1 TKLEEHLEGIVNIFHQYSVRKGHFDTLSKGELKQLLTKELANTIKNIKDKAVIDEIFQGLDANQDEQVDFQEFISLVAIALKAAHYH 87
                                    10        20        30        40        50        60        70        80       


Chain B from PDB  Type:PROTEIN  Length:88
 aligned with S10AC_HUMAN | P80511 from UniProtKB/Swiss-Prot  Length:92

    Alignment length:88
                                    11        21        31        41        51        61        71        81        
           S10AC_HUMAN    2 TKLEEHLEGIVNIFHQYSVRKGHFDTLSKGELKQLLTKELANTIKNIKDKAVIDEIFQGLDANQDEQVDFQEFISLVAIALKAAHYHT 89
               SCOP domains d1gqmb_ B: Calcyclin (S100)                                                              SCOP domains
               CATH domains 1gqmB00 B:1-88 EF-hand                                                                   CATH domains
               Pfam domains ---------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhh........hhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -----------------------------------------------EF_HAND_2  PDB: B:48-83             ----- PROSITE (1)
                PROSITE (2) -------------------------------------------------------S100_CABP  PDB: B:56-7----------- PROSITE (2)
               Transcript 1 Exon 1.2  PDB: B:1-45 UniProt: 1-46          Exon 1.4a  PDB: B:46-88 UniProt: 47-92      Transcript 1
                  1gqm B  1 TKLEEHLEGIVNIFHQYSVRKGHFDTLSKGELKQLLTKELANTIKNIKDKAVIDEIFQGLDANQDEQVDFQEFISLVAIALKAAHYHT 88
                                    10        20        30        40        50        60        70        80        


Chain C from PDB  Type:PROTEIN  Length:87
 aligned with S10AC_HUMAN | P80511 from UniProtKB/Swiss-Prot  Length:92

    Alignment length:87
                                    11        21        31        41        51        61        71        81       
           S10AC_HUMAN    2 TKLEEHLEGIVNIFHQYSVRKGHFDTLSKGELKQLLTKELANTIKNIKDKAVIDEIFQGLDANQDEQVDFQEFISLVAIALKAAHYH 88
               SCOP domains d1gqmc_ C: Calcyclin (S100)                                                             SCOP domains
               CATH domains 1gqmC00 C:1-87 EF-hand                                                                  CATH domains
               Pfam domains --------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhh......eehhhhhhhhhhhhh........hhhhhhhhhhhhh......eehhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -----------------------------------------------EF_HAND_2  PDB: C:48-83             ---- PROSITE (1)
                PROSITE (2) -------------------------------------------------------S100_CABP  PDB: C:56-7---------- PROSITE (2)
               Transcript 1 Exon 1.2  PDB: C:1-45 UniProt: 1-46          Exon 1.4a  PDB: C:46-87 UniProt: 47-92     Transcript 1
                  1gqm C  1 TKLEEHLEGIVNIFHQYSVRKGHFDTLSKGELKQLLTKELANTIKNIKDKAVIDEIFQGLDANQDEQVDFQEFISLVAIALKAAHYH 87
                                    10        20        30        40        50        60        70        80       


Chain D from PDB  Type:PROTEIN  Length:87
 aligned with S10AC_HUMAN | P80511 from UniProtKB/Swiss-Prot  Length:92

    Alignment length:87
                                    11        21        31        41        51        61        71        81       
           S10AC_HUMAN    2 TKLEEHLEGIVNIFHQYSVRKGHFDTLSKGELKQLLTKELANTIKNIKDKAVIDEIFQGLDANQDEQVDFQEFISLVAIALKAAHYH 88
               SCOP domains d1gqmd_ D: Calcyclin (S100)                                                             SCOP domains
               CATH domains 1gqmD00 D:1-87 EF-hand                                                                  CATH domains
               Pfam domains --------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhh........hhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -----------------------------------------------EF_HAND_2  PDB: D:48-83             ---- PROSITE (1)
                PROSITE (2) -------------------------------------------------------S100_CABP  PDB: D:56-7---------- PROSITE (2)
               Transcript 1 Exon 1.2  PDB: D:1-45 UniProt: 1-46          Exon 1.4a  PDB: D:46-87 UniProt: 47-92     Transcript 1
                  1gqm D  1 TKLEEHLEGIVNIFHQYSVRKGHFDTLSKGELKQLLTKELANTIKNIKDKAVIDEIFQGLDANQDEQVDFQEFISLVAIALKAAHYH 87
                                    10        20        30        40        50        60        70        80       


Chain E from PDB  Type:PROTEIN  Length:87
 aligned with S10AC_HUMAN | P80511 from UniProtKB/Swiss-Prot  Length:92

    Alignment length:87
                                    11        21        31        41        51        61        71        81       
           S10AC_HUMAN    2 TKLEEHLEGIVNIFHQYSVRKGHFDTLSKGELKQLLTKELANTIKNIKDKAVIDEIFQGLDANQDEQVDFQEFISLVAIALKAAHYH 88
               SCOP domains d1gqme_ E: Calcyclin (S100)                                                             SCOP domains
               CATH domains 1gqmE00 E:1-87 EF-hand                                                                  CATH domains
               Pfam domains --------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhh........hhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -----------------------------------------------EF_HAND_2  PDB: E:48-83             ---- PROSITE (1)
                PROSITE (2) -------------------------------------------------------S100_CABP  PDB: E:56-7---------- PROSITE (2)
               Transcript 1 Exon 1.2  PDB: E:1-45 UniProt: 1-46          Exon 1.4a  PDB: E:46-87 UniProt: 47-92     Transcript 1
                  1gqm E  1 TKLEEHLEGIVNIFHQYSVRKGHFDTLSKGELKQLLTKELANTIKNIKDKAVIDEIFQGLDANQDEQVDFQEFISLVAIALKAAHYH 87
                                    10        20        30        40        50        60        70        80       


Chain F from PDB  Type:PROTEIN  Length:87
 aligned with S10AC_HUMAN | P80511 from UniProtKB/Swiss-Prot  Length:92

    Alignment length:87
                                    11        21        31        41        51        61        71        81       
           S10AC_HUMAN    2 TKLEEHLEGIVNIFHQYSVRKGHFDTLSKGELKQLLTKELANTIKNIKDKAVIDEIFQGLDANQDEQVDFQEFISLVAIALKAAHYH 88
               SCOP domains d1gqmf_ F: Calcyclin (S100)                                                             SCOP domains
               CATH domains 1gqmF00 F:1-87 EF-hand                                                                  CATH domains
               Pfam domains --------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhh........hhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -----------------------------------------------EF_HAND_2  PDB: F:48-83             ---- PROSITE (1)
                PROSITE (2) -------------------------------------------------------S100_CABP  PDB: F:56-7---------- PROSITE (2)
               Transcript 1 Exon 1.2  PDB: F:1-45 UniProt: 1-46          Exon 1.4a  PDB: F:46-87 UniProt: 47-92     Transcript 1
                  1gqm F  1 TKLEEHLEGIVNIFHQYSVRKGHFDTLSKGELKQLLTKELANTIKNIKDKAVIDEIFQGLDANQDEQVDFQEFISLVAIALKAAHYH 87
                                    10        20        30        40        50        60        70        80       


Chain G from PDB  Type:PROTEIN  Length:87
 aligned with S10AC_HUMAN | P80511 from UniProtKB/Swiss-Prot  Length:92

    Alignment length:87
                                    11        21        31        41        51        61        71        81       
           S10AC_HUMAN    2 TKLEEHLEGIVNIFHQYSVRKGHFDTLSKGELKQLLTKELANTIKNIKDKAVIDEIFQGLDANQDEQVDFQEFISLVAIALKAAHYH 88
               SCOP domains d1gqmg_ G: Calcyclin (S100)                                                             SCOP domains
               CATH domains 1gqmG00 G:1-87 EF-hand                                                                  CATH domains
               Pfam domains --------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhh......eehhhhhhhhhhhhh........hhhhhhhhhhhhh......eehhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -----------------------------------------------EF_HAND_2  PDB: G:48-83             ---- PROSITE (1)
                PROSITE (2) -------------------------------------------------------S100_CABP  PDB: G:56-7---------- PROSITE (2)
               Transcript 1 Exon 1.2  PDB: G:1-45 UniProt: 1-46          Exon 1.4a  PDB: G:46-87 UniProt: 47-92     Transcript 1
                  1gqm G  1 TKLEEHLEGIVNIFHQYSVRKGHFDTLSKGELKQLLTKELANTIKNIKDKAVIDEIFQGLDANQDEQVDFQEFISLVAIALKAAHYH 87
                                    10        20        30        40        50        60        70        80       


Chain H from PDB  Type:PROTEIN  Length:88
 aligned with S10AC_HUMAN | P80511 from UniProtKB/Swiss-Prot  Length:92

    Alignment length:88
                                    11        21        31        41        51        61        71        81        
           S10AC_HUMAN    2 TKLEEHLEGIVNIFHQYSVRKGHFDTLSKGELKQLLTKELANTIKNIKDKAVIDEIFQGLDANQDEQVDFQEFISLVAIALKAAHYHT 89
               SCOP domains d1gqmh_ H: Calcyclin (S100)                                                              SCOP domains
               CATH domains 1gqmH00 H:1-88 EF-hand                                                                   CATH domains
               Pfam domains ---------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhh.......eehhhhhhhhhhhh........hhhhhhhhhhhhh.....eehhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -----------------------------------------------EF_HAND_2  PDB: H:48-83             ----- PROSITE (1)
                PROSITE (2) -------------------------------------------------------S100_CABP  PDB: H:56-7----------- PROSITE (2)
               Transcript 1 Exon 1.2  PDB: H:1-45 UniProt: 1-46          Exon 1.4a  PDB: H:46-88 UniProt: 47-92      Transcript 1
                  1gqm H  1 TKLEEHLEGIVNIFHQYSVRKGHFDTLSKGELKQLLTKELANTIKNIKDKAVIDEIFQGLDANQDEQVDFQEFISLVAIALKAAHYHT 88
                                    10        20        30        40        50        60        70        80        


Chain I from PDB  Type:PROTEIN  Length:87
 aligned with S10AC_HUMAN | P80511 from UniProtKB/Swiss-Prot  Length:92

    Alignment length:87
                                    11        21        31        41        51        61        71        81       
           S10AC_HUMAN    2 TKLEEHLEGIVNIFHQYSVRKGHFDTLSKGELKQLLTKELANTIKNIKDKAVIDEIFQGLDANQDEQVDFQEFISLVAIALKAAHYH 88
               SCOP domains d1gqmi_ I: Calcyclin (S100)                                                             SCOP domains
               CATH domains 1gqmI00 I:1-87 EF-hand                                                                  CATH domains
               Pfam domains --------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhh........hhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -----------------------------------------------EF_HAND_2  PDB: I:48-83             ---- PROSITE (1)
                PROSITE (2) -------------------------------------------------------S100_CABP  PDB: I:56-7---------- PROSITE (2)
               Transcript 1 Exon 1.2  PDB: I:1-45 UniProt: 1-46          Exon 1.4a  PDB: I:46-87 UniProt: 47-92     Transcript 1
                  1gqm I  1 TKLEEHLEGIVNIFHQYSVRKGHFDTLSKGELKQLLTKELANTIKNIKDKAVIDEIFQGLDANQDEQVDFQEFISLVAIALKAAHYH 87
                                    10        20        30        40        50        60        70        80       


Chain J from PDB  Type:PROTEIN  Length:87
 aligned with S10AC_HUMAN | P80511 from UniProtKB/Swiss-Prot  Length:92

    Alignment length:87
                                    11        21        31        41        51        61        71        81       
           S10AC_HUMAN    2 TKLEEHLEGIVNIFHQYSVRKGHFDTLSKGELKQLLTKELANTIKNIKDKAVIDEIFQGLDANQDEQVDFQEFISLVAIALKAAHYH 88
               SCOP domains d1gqmj_ J: Calcyclin (S100)                                                             SCOP domains
               CATH domains 1gqmJ00 J:1-87 EF-hand                                                                  CATH domains
               Pfam domains --------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhh......eehhhhhhhhhhhhh........hhhhhhhhhhhhh......eehhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -----------------------------------------------EF_HAND_2  PDB: J:48-83             ---- PROSITE (1)
                PROSITE (2) -------------------------------------------------------S100_CABP  PDB: J:56-7---------- PROSITE (2)
               Transcript 1 Exon 1.2  PDB: J:1-45 UniProt: 1-46          Exon 1.4a  PDB: J:46-87 UniProt: 47-92     Transcript 1
                  1gqm J  1 TKLEEHLEGIVNIFHQYSVRKGHFDTLSKGELKQLLTKELANTIKNIKDKAVIDEIFQGLDANQDEQVDFQEFISLVAIALKAAHYH 87
                                    10        20        30        40        50        60        70        80       


Chain K from PDB  Type:PROTEIN  Length:87
 aligned with S10AC_HUMAN | P80511 from UniProtKB/Swiss-Prot  Length:92

    Alignment length:87
                                    11        21        31        41        51        61        71        81       
           S10AC_HUMAN    2 TKLEEHLEGIVNIFHQYSVRKGHFDTLSKGELKQLLTKELANTIKNIKDKAVIDEIFQGLDANQDEQVDFQEFISLVAIALKAAHYH 88
               SCOP domains d1gqmk_ K: Calcyclin (S100)                                                             SCOP domains
               CATH domains 1gqmK00 K:1-87 EF-hand                                                                  CATH domains
               Pfam domains --------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhh........hhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -----------------------------------------------EF_HAND_2  PDB: K:48-83             ---- PROSITE (1)
                PROSITE (2) -------------------------------------------------------S100_CABP  PDB: K:56-7---------- PROSITE (2)
               Transcript 1 Exon 1.2  PDB: K:1-45 UniProt: 1-46          Exon 1.4a  PDB: K:46-87 UniProt: 47-92     Transcript 1
                  1gqm K  1 TKLEEHLEGIVNIFHQYSVRKGHFDTLSKGELKQLLTKELANTIKNIKDKAVIDEIFQGLDANQDEQVDFQEFISLVAIALKAAHYH 87
                                    10        20        30        40        50        60        70        80       


Chain L from PDB  Type:PROTEIN  Length:86
 aligned with S10AC_HUMAN | P80511 from UniProtKB/Swiss-Prot  Length:92

    Alignment length:86
                                    11        21        31        41        51        61        71        81      
           S10AC_HUMAN    2 TKLEEHLEGIVNIFHQYSVRKGHFDTLSKGELKQLLTKELANTIKNIKDKAVIDEIFQGLDANQDEQVDFQEFISLVAIALKAAHY 87
               SCOP domains d1gqml_ L: Calcyclin (S100)                                                            SCOP domains
               CATH domains 1gqmL00 L:1-86 EF-hand                                                                 CATH domains
               Pfam domains -------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhh........hhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -----------------------------------------------EF_HAND_2  PDB: L:48-83             --- PROSITE (1)
                PROSITE (2) -------------------------------------------------------S100_CABP  PDB: L:56-7--------- PROSITE (2)
               Transcript 1 Exon 1.2  PDB: L:1-45 UniProt: 1-46          Exon 1.4a  PDB: L:46-86 UniProt: 47-92    Transcript 1
                  1gqm L  1 TKLEEHLEGIVNIFHQYSVRKGHFDTLSKGELKQLLTKELANTIKNIKDKAVIDEIFQGLDANQDEQVDFQEFISLVAIALKAAHY 86
                                    10        20        30        40        50        60        70        80
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 12)

Asymmetric Unit
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (1, 12)

Asymmetric Unit
(-)
Class: Mainly Alpha (13335)
(-)
Architecture: Orthogonal Bundle (10391)
(-)
Topology: Recoverin; domain 1 (474)
(-)
Homologous Superfamily: EF-hand (412)
(-)
Human (Homo sapiens) (106)
1a1gqmB00B:1-88
1b1gqmH00H:1-88
1c1gqmA00A:1-87
1d1gqmC00C:1-87
1e1gqmD00D:1-87
1f1gqmE00E:1-87
1g1gqmF00F:1-87
1h1gqmG00G:1-87
1i1gqmI00I:1-87
1j1gqmJ00J:1-87
1k1gqmK00K:1-87
1l1gqmL00L:1-86

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1GQM)

(-) Gene Ontology  (28, 28)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H,I,J,K,L   (S10AC_HUMAN | P80511)
molecular function
    GO:0050786    RAGE receptor binding    Interacting selectively and non-covalently with the RAGE receptor, the receptor for advanced glycation end-products.
    GO:0005509    calcium ion binding    Interacting selectively and non-covalently with calcium ions (Ca2+).
    GO:0005507    copper ion binding    Interacting selectively and non-covalently with copper (Cu) ions.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0008270    zinc ion binding    Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
    GO:0050663    cytokine secretion    The regulated release of cytokines from a cell. Cytokines are any of a group of proteins that function to control the survival, growth and differentiation of tissues and cells, and which have autocrine and paracrine activity.
    GO:0042742    defense response to bacterium    Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism.
    GO:0050832    defense response to fungus    Reactions triggered in response to the presence of a fungus that act to protect the cell or organism.
    GO:0002376    immune system process    Any process involved in the development or functioning of the immune system, an organismal system for calibrated responses to potential internal or invasive threats.
    GO:0006954    inflammatory response    The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages.
    GO:0045087    innate immune response    Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens.
    GO:0031640    killing of cells of other organism    Any process in an organism that results in the killing of cells of another organism, including in some cases the death of the other organism. Killing here refers to the induction of death in one cell by another cell, not cell-autonomous death due to internal or other environmental conditions.
    GO:0045576    mast cell activation    The change in morphology and behavior of a mast cell resulting from exposure to a cytokine, chemokine, soluble factor, or to (at least in mammals) an antigen which the mast cell has specifically bound via IgE bound to Fc-epsilonRI receptors.
    GO:0002548    monocyte chemotaxis    The movement of a monocyte in response to an external stimulus.
    GO:0030593    neutrophil chemotaxis    The directed movement of a neutrophil cell, the most numerous polymorphonuclear leukocyte found in the blood, in response to an external stimulus, usually an infection or wounding.
    GO:0043123    positive regulation of I-kappaB kinase/NF-kappaB signaling    Any process that activates or increases the frequency, rate or extent of I-kappaB kinase/NF-kappaB signaling.
    GO:0043406    positive regulation of MAP kinase activity    Any process that activates or increases the frequency, rate or extent of MAP kinase activity.
    GO:0051092    positive regulation of NF-kappaB transcription factor activity    Any process that activates or increases the frequency, rate or extent of activity of the transcription factor NF-kappaB.
    GO:0050729    positive regulation of inflammatory response    Any process that activates or increases the frequency, rate or extent of the inflammatory response.
    GO:0006805    xenobiotic metabolic process    The chemical reactions and pathways involving a xenobiotic compound, a compound foreign to living organisms. Used of chemical compounds, e.g. a xenobiotic chemical, such as a pesticide.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005856    cytoskeleton    Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        S10AC_HUMAN | P80511: 1e8a 1odb 2m9g 2wc8 2wcb 2wce 2wcf

(-) Related Entries Specified in the PDB File

1e8a THE THREE-DIMENSIONAL STRUCTURE OF HUMAN S100A12