Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asymmetric Unit
(-)Asym. Unit - sites
(-)Biological Unit 1
(-)Biol. Unit 1 - sites
(-)Biological Unit 2
collapse expand < >
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Asym. Unit - sites
Asym. Unit - sites  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biol. Unit 1 - sites
Biol. Unit 1 - sites  (Jmol Viewer)
Image Biological Unit 2
Biological Unit 2  (Jmol Viewer)

(-) Description

Title :  STRUCTURE AND LOCATION OF GENE PRODUCT 8 IN THE BACTERIOPHAGE T4 BASEPLATE
 
Authors :  P. G. Leiman, M. M. Shneider, V. A. Kostyuchenko, P. R. Chipman, V. V. Mesyanzhinov, M. G. Rossmann
Date :  18 Nov 02  (Deposition) - 10 Jun 03  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Bacteriophage T4, Baseplate, Dimer, Beta Sandwich, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. G. Leiman, M. M. Shneider, V. A. Kostyuchenko, P. R. Chipman, V. V. Mesyanzhinov, M. G. Rossmann
Structure And Location Of Gene Product 8 In The Bacteriophage T4 Baseplate
J. Mol. Biol. V. 328 821 2003
PubMed-ID: 12729757  |  Reference-DOI: 10.1016/S0022-2836(03)00366-8
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - BASEPLATE STRUCTURAL PROTEIN GP8
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET-22B(+)
    Expression System Strain: 834 (DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: GENE 8
    Organism Scientific: ENTEROBACTERIA PHAGE T4
    Organism Taxid: 10665
    Synonym: BASEPLATE WEDGE PROTEIN 8

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 78)

Asymmetric Unit (2, 78)
No.NameCountTypeFull Name
1CL30Ligand/IonCHLORIDE ION
2MSE48Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 24)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2MSE24Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (1, 24)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2MSE24Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (30, 30)

Asymmetric Unit (30, 30)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASP A:102 , PRO A:103 , TYR A:104 , THR A:105 , HOH A:1862BINDING SITE FOR RESIDUE CL A 1701
02AC2SOFTWAREASN A:23 , ASN A:26 , HOH A:1829 , ASN B:35 , HOH B:1781BINDING SITE FOR RESIDUE CL A 1702
03AC3SOFTWARETRP A:212 , PRO A:213 , GLU A:214BINDING SITE FOR RESIDUE CL A 1703
04AC4SOFTWAREARG A:202 , SER B:124BINDING SITE FOR RESIDUE CL A 1704
05AC5SOFTWAREPRO A:83 , SER A:84BINDING SITE FOR RESIDUE CL A 1705
06AC6SOFTWAREALA A:281 , LYS A:282 , MSE A:303BINDING SITE FOR RESIDUE CL A 1706
07AC7SOFTWAREARG A:248BINDING SITE FOR RESIDUE CL A 1707
08AC8SOFTWARETYR A:25 , TRP A:212 , GLU A:215 , HOH A:1932BINDING SITE FOR RESIDUE CL A 1708
09AC9SOFTWAREPRO B:103 , TYR B:104 , THR B:105BINDING SITE FOR RESIDUE CL B 1709
10BC1SOFTWARETRP B:212 , PRO B:213 , GLU B:214 , HOH B:1990BINDING SITE FOR RESIDUE CL B 1710
11BC2SOFTWAREASN B:201 , ARG B:202BINDING SITE FOR RESIDUE CL B 1711
12BC3SOFTWAREPRO B:83 , SER B:84 , HOH B:1889BINDING SITE FOR RESIDUE CL B 1712
13BC4SOFTWAREALA B:281 , LYS B:282 , HOH B:1739BINDING SITE FOR RESIDUE CL B 1713
14BC5SOFTWAREARG B:248 , LEU B:331 , HOH B:1977BINDING SITE FOR RESIDUE CL B 1714
15BC6SOFTWAREASP C:102 , PRO C:103 , TYR C:104 , THR C:105BINDING SITE FOR RESIDUE CL C 1715
16BC7SOFTWARELEU C:22 , ASN C:23 , ASN C:26 , ASN D:35 , HOH D:1795BINDING SITE FOR RESIDUE CL C 1716
17BC8SOFTWAREPRO C:213 , GLU C:214 , CL C:1722 , HOH C:1740 , HOH C:1860BINDING SITE FOR RESIDUE CL C 1717
18BC9SOFTWAREASN C:201 , ARG C:202 , LYS C:250 , HOH C:1784 , HOH C:1943 , SER D:124BINDING SITE FOR RESIDUE CL C 1718
19CC1SOFTWAREPRO C:83 , SER C:84BINDING SITE FOR RESIDUE CL C 1719
20CC2SOFTWAREALA C:281 , LYS C:282 , HOH C:1856BINDING SITE FOR RESIDUE CL C 1720
21CC3SOFTWAREARG C:248 , HOH C:1831BINDING SITE FOR RESIDUE CL C 1721
22CC4SOFTWARETYR C:25 , TRP C:212 , GLU C:215 , CL C:1717BINDING SITE FOR RESIDUE CL C 1722
23CC5SOFTWAREASP D:102 , PRO D:103 , TYR D:104 , THR D:105BINDING SITE FOR RESIDUE CL D 1723
24CC6SOFTWAREPRO D:213 , GLU D:214 , HOH D:1974BINDING SITE FOR RESIDUE CL D 1724
25CC7SOFTWAREARG D:202 , HOH D:1937BINDING SITE FOR RESIDUE CL D 1725
26CC8SOFTWAREPRO D:83 , SER D:84BINDING SITE FOR RESIDUE CL D 1726
27CC9SOFTWAREALA D:281 , LYS D:282 , MSE D:303 , HOH D:1747 , HOH D:1827BINDING SITE FOR RESIDUE CL D 1727
28DC1SOFTWAREARG D:248 , HOH D:1825BINDING SITE FOR RESIDUE CL D 1728
29DC2SOFTWAREARG A:92 , HOH A:1827 , HOH A:1838BINDING SITE FOR RESIDUE CL A 1729
30DC3SOFTWAREARG C:92 , HOH C:1737 , HOH C:1890BINDING SITE FOR RESIDUE CL C 1730

(-) SS Bonds  (4, 4)

Asymmetric Unit
No.Residues
1A:142 -A:153
2B:142 -B:153
3C:142 -C:153
4D:142 -D:153

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1N7Z)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1N7Z)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1N7Z)

(-) Exons   (0, 0)

(no "Exon" information available for 1N7Z)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:328
 aligned with BP08_BPT4 | P19062 from UniProtKB/Swiss-Prot  Length:334

    Alignment length:328
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326        
            BP08_BPT4     7 IYRAIVTSKFRTEKMLNFYNSIGSGPDKNTIFITFGRSEPWSSNENEVGFAPPYPTDSVLGVTDMWTHMMGTVKVLPSMLDAVIPRRDWGDTRYPDPYTFRINDIVVCNSAPYNATESGAGWLVYRCLDVPDTGMCSIASLTDKDECLKLGGKWTPSARSMTPPEGRGDAEGTIEPGDGYVWEYLFEIPPDVSINRCTNEYIVVPWPEELKEDPTRWGYEDNLTWQQDDFGLIYRVKANTIRFKAYLDSVYFPEAALPGNKGFRQISIITNPLEAKAHPNDPNVKAEKDYYDPEDLMRHSGEMIYMENRPPIIMAMDQTEEINILFTF 334
               SCOP domains d1n7za_ A: Baseplate structural protein gp8                                                                                                                                                                                                                                                                                              SCOP domains
               CATH domains -----1n7zA01 A:12-87,A:246-334 baseplate structural protein gp8, domain 1        1n7zA02 A:88-245 baseplate structural protein gp8, domain 2                                                                                                   1n7zA01 A:12-87,A:246-334 baseplate structural protein gp8, domain 1                      CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeehhhhhhhhhhhhhhhh........eeeeee.....hhhhhh..........hhhhhhhhhhheeeeeeehhh.eeeeee...................eeee.............eeeeeeee....eee......hhhhhhhh...eee................ee......eeeeeeeehhhhhhhhh...eeee.hhhhhhhhhhhhh.....hhhhhh.hhhhhh...eeee.eeee...hhhhhh.....eeeeeeee...................eehhhhh.....eeeeeeeeeee......eeee..eee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1n7z A   7 IYRAIVTSKFRTEKmLNFYNSIGSGPDKNTIFITFGRSEPWSSNENEVGFAPPYPTDSVLGVTDmWTHmmGTVKVLPSmLDAVIPRRDWGDTRYPDPYTFRINDIVVCNSAPYNATESGAGWLVYRCLDVPDTGmCSIASLTDKDECLKLGGKWTPSARSmTPPEGRGDAEGTIEPGDGYVWEYLFEIPPDVSINRCTNEYIVVPWPEELKEDPTRWGYEDNLTWQQDDFGLIYRVKANTIRFKAYLDSVYFPEAALPGNKGFRQISIITNPLEAKAHPNDPNVKAEKDYYDPEDLmRHSGEmIYmENRPPIImAmDQTEEINILFTF 334
                                    16    |   26        36        46        56        66    |   76        86        96       106       116       126       136    |  146       156       166|      176       186       196       206       216       226       236       246       256       266       276       286       296      |306  |  | 316   | | 326        
                                         21-MSE                                            71-MSE|       85-MSE                                                 141-MSE                   167-MSE                                                                                                                                 303-MSE |  |     320-MSE          
                                                                                               75-MSE                                                                                                                                                                                                                                   309-MSE      322-MSE        
                                                                                                76-MSE                                                                                                                                                                                                                                     312-MSE                  


Chain B from PDB  Type:PROTEIN  Length:328
 aligned with BP08_BPT4 | P19062 from UniProtKB/Swiss-Prot  Length:334

    Alignment length:328
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326        
            BP08_BPT4     7 IYRAIVTSKFRTEKMLNFYNSIGSGPDKNTIFITFGRSEPWSSNENEVGFAPPYPTDSVLGVTDMWTHMMGTVKVLPSMLDAVIPRRDWGDTRYPDPYTFRINDIVVCNSAPYNATESGAGWLVYRCLDVPDTGMCSIASLTDKDECLKLGGKWTPSARSMTPPEGRGDAEGTIEPGDGYVWEYLFEIPPDVSINRCTNEYIVVPWPEELKEDPTRWGYEDNLTWQQDDFGLIYRVKANTIRFKAYLDSVYFPEAALPGNKGFRQISIITNPLEAKAHPNDPNVKAEKDYYDPEDLMRHSGEMIYMENRPPIIMAMDQTEEINILFTF 334
               SCOP domains d1n7zb_ B: Baseplate structural protein gp8                                                                                                                                                                                                                                                                                              SCOP domains
               CATH domains -----1n7zB01 B:12-87,B:246-334 baseplate structural protein gp8, domain 1        1n7zB02 B:88-245 baseplate structural protein gp8, domain 2                                                                                                   1n7zB01 B:12-87,B:246-334 baseplate structural protein gp8, domain 1                      CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeehhhhhhhhhhhhhhh.........eeeeee.....................hhhhhhhhhhheeeeee.hhh.eeeeee...................eeee..hhhhh......eeeeeeee....eee......hhhhhhhh...eee................ee......eeeeeeeehhhhhhhh....eeee.hhhhhhhhhhhhh.....hhhhhh.hhhhhh...eeeeeeeee...hhhhh......eeeeeeee...................eehhhhh.....eeeeeeeeeee......eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1n7z B   7 IYRAIVTSKFRTEKmLNFYNSIGSGPDKNTIFITFGRSEPWSSNENEVGFAPPYPTDSVLGVTDmWTHmmGTVKVLPSmLDAVIPRRDWGDTRYPDPYTFRINDIVVCNSAPYNATESGAGWLVYRCLDVPDTGmCSIASLTDKDECLKLGGKWTPSARSmTPPEGRGDAEGTIEPGDGYVWEYLFEIPPDVSINRCTNEYIVVPWPEELKEDPTRWGYEDNLTWQQDDFGLIYRVKANTIRFKAYLDSVYFPEAALPGNKGFRQISIITNPLEAKAHPNDPNVKAEKDYYDPEDLmRHSGEmIYmENRPPIImAmDQTEEINILFTF 334
                                    16    |   26        36        46        56        66    |   76        86        96       106       116       126       136    |  146       156       166|      176       186       196       206       216       226       236       246       256       266       276       286       296      |306  |  | 316   | | 326        
                                         21-MSE                                            71-MSE|       85-MSE                                                 141-MSE                   167-MSE                                                                                                                                 303-MSE |  |     320-MSE          
                                                                                               75-MSE                                                                                                                                                                                                                                   309-MSE      322-MSE        
                                                                                                76-MSE                                                                                                                                                                                                                                     312-MSE                  


Chain C from PDB  Type:PROTEIN  Length:328
 aligned with BP08_BPT4 | P19062 from UniProtKB/Swiss-Prot  Length:334

    Alignment length:328
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326        
            BP08_BPT4     7 IYRAIVTSKFRTEKMLNFYNSIGSGPDKNTIFITFGRSEPWSSNENEVGFAPPYPTDSVLGVTDMWTHMMGTVKVLPSMLDAVIPRRDWGDTRYPDPYTFRINDIVVCNSAPYNATESGAGWLVYRCLDVPDTGMCSIASLTDKDECLKLGGKWTPSARSMTPPEGRGDAEGTIEPGDGYVWEYLFEIPPDVSINRCTNEYIVVPWPEELKEDPTRWGYEDNLTWQQDDFGLIYRVKANTIRFKAYLDSVYFPEAALPGNKGFRQISIITNPLEAKAHPNDPNVKAEKDYYDPEDLMRHSGEMIYMENRPPIIMAMDQTEEINILFTF 334
               SCOP domains d1n7zc_ C: Baseplate structural protein gp8                                                                                                                                                                                                                                                                                              SCOP domains
               CATH domains -----1n7zC01 C:12-87,C:246-334 baseplate structural protein gp8, domain 1        1n7zC02 C:88-245 baseplate structural protein gp8, domain 2                                                                                                   1n7zC01 C:12-87,C:246-334 baseplate structural protein gp8, domain 1                      CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee.hhhhhhhhhhhhhhh........eeeeee.....................hhhhhhhhhhheeeeeeehhh.eeeeee...................eeee.............eeeeeeee....eee......hhhhhhhh...eee................ee......eeeeeeeehhhhhhhh....eeee.hhhhhhhhhhhhh.....hhhhhh.hhhhhh...eeee.eeee.hhh..........eeeeeeee...................eehhhhh.....eeeeeeeeeee......eeee..eee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1n7z C   7 IYRAIVTSKFRTEKmLNFYNSIGSGPDKNTIFITFGRSEPWSSNENEVGFAPPYPTDSVLGVTDmWTHmmGTVKVLPSmLDAVIPRRDWGDTRYPDPYTFRINDIVVCNSAPYNATESGAGWLVYRCLDVPDTGmCSIASLTDKDECLKLGGKWTPSARSmTPPEGRGDAEGTIEPGDGYVWEYLFEIPPDVSINRCTNEYIVVPWPEELKEDPTRWGYEDNLTWQQDDFGLIYRVKANTIRFKAYLDSVYFPEAALPGNKGFRQISIITNPLEAKAHPNDPNVKAEKDYYDPEDLmRHSGEmIYmENRPPIImAmDQTEEINILFTF 334
                                    16    |   26        36        46        56        66    |   76        86        96       106       116       126       136    |  146       156       166|      176       186       196       206       216       226       236       246       256       266       276       286       296      |306  |  | 316   | | 326        
                                         21-MSE                                            71-MSE|       85-MSE                                                 141-MSE                   167-MSE                                                                                                                                 303-MSE |  |     320-MSE          
                                                                                               75-MSE                                                                                                                                                                                                                                   309-MSE      322-MSE        
                                                                                                76-MSE                                                                                                                                                                                                                                     312-MSE                  


Chain D from PDB  Type:PROTEIN  Length:328
 aligned with BP08_BPT4 | P19062 from UniProtKB/Swiss-Prot  Length:334

    Alignment length:328
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326        
            BP08_BPT4     7 IYRAIVTSKFRTEKMLNFYNSIGSGPDKNTIFITFGRSEPWSSNENEVGFAPPYPTDSVLGVTDMWTHMMGTVKVLPSMLDAVIPRRDWGDTRYPDPYTFRINDIVVCNSAPYNATESGAGWLVYRCLDVPDTGMCSIASLTDKDECLKLGGKWTPSARSMTPPEGRGDAEGTIEPGDGYVWEYLFEIPPDVSINRCTNEYIVVPWPEELKEDPTRWGYEDNLTWQQDDFGLIYRVKANTIRFKAYLDSVYFPEAALPGNKGFRQISIITNPLEAKAHPNDPNVKAEKDYYDPEDLMRHSGEMIYMENRPPIIMAMDQTEEINILFTF 334
               SCOP domains d1n7zd_ D: Baseplate structural protein gp8                                                                                                                                                                                                                                                                                              SCOP domains
               CATH domains -----1n7zD01 D:12-87,D:246-334 baseplate structural protein gp8, domain 1        1n7zD02 D:88-245 baseplate structural protein gp8, domain 2                                                                                                   1n7zD01 D:12-87,D:246-334 baseplate structural protein gp8, domain 1                      CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeehhhhhhhhhhhhhhhh........eeeeee.....................hhhhhhhhhhheeeeee.hhh.eeeeee...................eeee.............eeeeeeee....eee......hhhhhhhh...eee................ee......eeeeeeeehhhhhhhhh...eeee.hhhhhhhhhhhhh.....hhhhhh.hhhhhh...eeeeeeeee.hhhhhhh......eeeeeeee...................eehhhhh.....eeeeeeeeeee......eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1n7z D   7 IYRAIVTSKFRTEKmLNFYNSIGSGPDKNTIFITFGRSEPWSSNENEVGFAPPYPTDSVLGVTDmWTHmmGTVKVLPSmLDAVIPRRDWGDTRYPDPYTFRINDIVVCNSAPYNATESGAGWLVYRCLDVPDTGmCSIASLTDKDECLKLGGKWTPSARSmTPPEGRGDAEGTIEPGDGYVWEYLFEIPPDVSINRCTNEYIVVPWPEELKEDPTRWGYEDNLTWQQDDFGLIYRVKANTIRFKAYLDSVYFPEAALPGNKGFRQISIITNPLEAKAHPNDPNVKAEKDYYDPEDLmRHSGEmIYmENRPPIImAmDQTEEINILFTF 334
                                    16    |   26        36        46        56        66    |   76        86        96       106       116       126       136    |  146       156       166|      176       186       196       206       216       226       236       246       256       266       276       286       296      |306  |  | 316   | | 326        
                                         21-MSE                                            71-MSE|       85-MSE                                                 141-MSE                   167-MSE                                                                                                                                 303-MSE |  |     320-MSE          
                                                                                               75-MSE                                                                                                                                                                                                                                   309-MSE      322-MSE        
                                                                                                76-MSE                                                                                                                                                                                                                                     312-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (2, 8)

Asymmetric Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1N7Z)

(-) Gene Ontology  (2, 2)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (BP08_BPT4 | P19062)
biological process
    GO:0019076    viral release from host cell    The dissemination of mature viral particles from the host cell, e.g. by cell lysis or the budding of virus particles from the cell membrane.
cellular component
    GO:0019012    virion    The complete fully infectious extracellular virus particle.

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    CL  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    MSE  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
    AC9  [ RasMol ]  +environment [ RasMol ]
    BC1  [ RasMol ]  +environment [ RasMol ]
    BC2  [ RasMol ]  +environment [ RasMol ]
    BC3  [ RasMol ]  +environment [ RasMol ]
    BC4  [ RasMol ]  +environment [ RasMol ]
    BC5  [ RasMol ]  +environment [ RasMol ]
    BC6  [ RasMol ]  +environment [ RasMol ]
    BC7  [ RasMol ]  +environment [ RasMol ]
    BC8  [ RasMol ]  +environment [ RasMol ]
    BC9  [ RasMol ]  +environment [ RasMol ]
    CC1  [ RasMol ]  +environment [ RasMol ]
    CC2  [ RasMol ]  +environment [ RasMol ]
    CC3  [ RasMol ]  +environment [ RasMol ]
    CC4  [ RasMol ]  +environment [ RasMol ]
    CC5  [ RasMol ]  +environment [ RasMol ]
    CC6  [ RasMol ]  +environment [ RasMol ]
    CC7  [ RasMol ]  +environment [ RasMol ]
    CC8  [ RasMol ]  +environment [ RasMol ]
    CC9  [ RasMol ]  +environment [ RasMol ]
    DC1  [ RasMol ]  +environment [ RasMol ]
    DC2  [ RasMol ]  +environment [ RasMol ]
    DC3  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 1n7z)
 
Biological Units
  Complete Structure
    Biological Unit 1  [ Jena3D ]
    Biological Unit 2  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ Asym. Unit PNG format | Asym. Unit - sites PNG format | Biol. Unit 1 PNG format | Biol. Unit 1 - sites PNG format | Biol. Unit 2 PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  1n7z
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  BP08_BPT4 | P19062
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  (no 'Enzyme Classificator' available)
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  BP08_BPT4 | P19062
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        BP08_BPT4 | P19062: 1n80 1n8b 1pdm 1tja 5hx2 5iv5 5iv7

(-) Related Entries Specified in the PDB File

1n80 BACTERIOPHAGE T4 BASEPLATE STRUCTURAL PROTEIN GP8