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1N7Z
Biol. Unit 2
Info
Asym.Unit (243 KB)
Biol.Unit 1 (120 KB)
Biol.Unit 2 (121 KB)
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(1)
Title
:
STRUCTURE AND LOCATION OF GENE PRODUCT 8 IN THE BACTERIOPHAGE T4 BASEPLATE
Authors
:
P. G. Leiman, M. M. Shneider, V. A. Kostyuchenko, P. R. Chipman, V. V. Mesyanzhinov, M. G. Rossmann
Date
:
18 Nov 02 (Deposition) - 10 Jun 03 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Bacteriophage T4, Baseplate, Dimer, Beta Sandwich, Viral Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. G. Leiman, M. M. Shneider, V. A. Kostyuchenko, P. R. Chipman, V. V. Mesyanzhinov, M. G. Rossmann
Structure And Location Of Gene Product 8 In The Bacteriophage T4 Baseplate
J. Mol. Biol. V. 328 821 2003
(for further references see the
PDB file header
)
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Hetero Components
(1, 24)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1aa: CHLORIDE ION (CLaa)
1ab: CHLORIDE ION (CLab)
1ac: CHLORIDE ION (CLac)
1ad: CHLORIDE ION (CLad)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
1e: CHLORIDE ION (CLe)
1f: CHLORIDE ION (CLf)
1g: CHLORIDE ION (CLg)
1h: CHLORIDE ION (CLh)
1i: CHLORIDE ION (CLi)
1j: CHLORIDE ION (CLj)
1k: CHLORIDE ION (CLk)
1l: CHLORIDE ION (CLl)
1m: CHLORIDE ION (CLm)
1n: CHLORIDE ION (CLn)
1o: CHLORIDE ION (CLo)
1p: CHLORIDE ION (CLp)
1q: CHLORIDE ION (CLq)
1r: CHLORIDE ION (CLr)
1s: CHLORIDE ION (CLs)
1t: CHLORIDE ION (CLt)
1u: CHLORIDE ION (CLu)
1v: CHLORIDE ION (CLv)
1w: CHLORIDE ION (CLw)
1x: CHLORIDE ION (CLx)
1y: CHLORIDE ION (CLy)
1z: CHLORIDE ION (CLz)
2a: SELENOMETHIONINE (MSEa)
2aa: SELENOMETHIONINE (MSEaa)
2ab: SELENOMETHIONINE (MSEab)
2ac: SELENOMETHIONINE (MSEac)
2ad: SELENOMETHIONINE (MSEad)
2ae: SELENOMETHIONINE (MSEae)
2af: SELENOMETHIONINE (MSEaf)
2ag: SELENOMETHIONINE (MSEag)
2ah: SELENOMETHIONINE (MSEah)
2ai: SELENOMETHIONINE (MSEai)
2aj: SELENOMETHIONINE (MSEaj)
2ak: SELENOMETHIONINE (MSEak)
2al: SELENOMETHIONINE (MSEal)
2am: SELENOMETHIONINE (MSEam)
2an: SELENOMETHIONINE (MSEan)
2ao: SELENOMETHIONINE (MSEao)
2ap: SELENOMETHIONINE (MSEap)
2aq: SELENOMETHIONINE (MSEaq)
2ar: SELENOMETHIONINE (MSEar)
2as: SELENOMETHIONINE (MSEas)
2at: SELENOMETHIONINE (MSEat)
2au: SELENOMETHIONINE (MSEau)
2av: SELENOMETHIONINE (MSEav)
2b: SELENOMETHIONINE (MSEb)
2c: SELENOMETHIONINE (MSEc)
2d: SELENOMETHIONINE (MSEd)
2e: SELENOMETHIONINE (MSEe)
2f: SELENOMETHIONINE (MSEf)
2g: SELENOMETHIONINE (MSEg)
2h: SELENOMETHIONINE (MSEh)
2i: SELENOMETHIONINE (MSEi)
2j: SELENOMETHIONINE (MSEj)
2k: SELENOMETHIONINE (MSEk)
2l: SELENOMETHIONINE (MSEl)
2m: SELENOMETHIONINE (MSEm)
2n: SELENOMETHIONINE (MSEn)
2o: SELENOMETHIONINE (MSEo)
2p: SELENOMETHIONINE (MSEp)
2q: SELENOMETHIONINE (MSEq)
2r: SELENOMETHIONINE (MSEr)
2s: SELENOMETHIONINE (MSEs)
2t: SELENOMETHIONINE (MSEt)
2u: SELENOMETHIONINE (MSEu)
2v: SELENOMETHIONINE (MSEv)
2w: SELENOMETHIONINE (MSEw)
2x: SELENOMETHIONINE (MSEx)
2y: SELENOMETHIONINE (MSEy)
2z: SELENOMETHIONINE (MSEz)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
-1
Ligand/Ion
CHLORIDE ION
2
MSE
24
Mod. Amino Acid
SELENOMETHIONINE
[
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]
Sites
(15, 15)
Info
All Sites
01: BC6 (SOFTWARE)
02: BC7 (SOFTWARE)
03: BC8 (SOFTWARE)
04: BC9 (SOFTWARE)
05: CC1 (SOFTWARE)
06: CC2 (SOFTWARE)
07: CC3 (SOFTWARE)
08: CC4 (SOFTWARE)
09: CC5 (SOFTWARE)
10: CC6 (SOFTWARE)
11: CC7 (SOFTWARE)
12: CC8 (SOFTWARE)
13: CC9 (SOFTWARE)
14: DC1 (SOFTWARE)
15: DC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
BC6
SOFTWARE
ASP C:102 , PRO C:103 , TYR C:104 , THR C:105
BINDING SITE FOR RESIDUE CL C 1715
02
BC7
SOFTWARE
LEU C:22 , ASN C:23 , ASN C:26 , ASN D:35 , HOH D:1795
BINDING SITE FOR RESIDUE CL C 1716
03
BC8
SOFTWARE
PRO C:213 , GLU C:214 , CL C:1722 , HOH C:1740 , HOH C:1860
BINDING SITE FOR RESIDUE CL C 1717
04
BC9
SOFTWARE
ASN C:201 , ARG C:202 , LYS C:250 , HOH C:1784 , HOH C:1943 , SER D:124
BINDING SITE FOR RESIDUE CL C 1718
05
CC1
SOFTWARE
PRO C:83 , SER C:84
BINDING SITE FOR RESIDUE CL C 1719
06
CC2
SOFTWARE
ALA C:281 , LYS C:282 , HOH C:1856
BINDING SITE FOR RESIDUE CL C 1720
07
CC3
SOFTWARE
ARG C:248 , HOH C:1831
BINDING SITE FOR RESIDUE CL C 1721
08
CC4
SOFTWARE
TYR C:25 , TRP C:212 , GLU C:215 , CL C:1717
BINDING SITE FOR RESIDUE CL C 1722
09
CC5
SOFTWARE
ASP D:102 , PRO D:103 , TYR D:104 , THR D:105
BINDING SITE FOR RESIDUE CL D 1723
10
CC6
SOFTWARE
PRO D:213 , GLU D:214 , HOH D:1974
BINDING SITE FOR RESIDUE CL D 1724
11
CC7
SOFTWARE
ARG D:202 , HOH D:1937
BINDING SITE FOR RESIDUE CL D 1725
12
CC8
SOFTWARE
PRO D:83 , SER D:84
BINDING SITE FOR RESIDUE CL D 1726
13
CC9
SOFTWARE
ALA D:281 , LYS D:282 , MSE D:303 , HOH D:1747 , HOH D:1827
BINDING SITE FOR RESIDUE CL D 1727
14
DC1
SOFTWARE
ARG D:248 , HOH D:1825
BINDING SITE FOR RESIDUE CL D 1728
15
DC3
SOFTWARE
ARG C:92 , HOH C:1737 , HOH C:1890
BINDING SITE FOR RESIDUE CL C 1730
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(, 0)
Info
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;
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1n7za_ (A:)
1b: SCOP_d1n7zb_ (B:)
1c: SCOP_d1n7zc_ (C:)
1d: SCOP_d1n7zd_ (D:)
View:
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(
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Baseplate structural protein gp8
(3)
Superfamily
:
Baseplate structural protein gp8
(3)
Family
:
Baseplate structural protein gp8
(3)
Protein domain
:
Baseplate structural protein gp8
(3)
Bacteriophage T4 [TaxId: 10665]
(3)
1a
d1n7za_
A:
1b
d1n7zb_
B:
1c
d1n7zc_
C:
1d
d1n7zd_
D:
[
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CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_1n7zA02 (A:88-245)
1b: CATH_1n7zB02 (B:88-245)
1c: CATH_1n7zC02 (C:88-245)
1d: CATH_1n7zD02 (D:88-245)
2a: CATH_1n7zA01 (A:12-87,A:246-334)
2b: CATH_1n7zB01 (B:12-87,B:246-334)
2c: CATH_1n7zC01 (C:12-87,C:246-334)
2d: CATH_1n7zD01 (D:12-87,D:246-334)
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Architectures
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Topologies
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(
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Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Complex
(381)
Topology
:
baseplate structural protein gp8, domain 2
(3)
Homologous Superfamily
:
baseplate structural protein gp8, domain 2
(3)
Enterobacteria phage t4. Organism_taxid: 10665.
(3)
1a
1n7zA02
A:88-245
1b
1n7zB02
B:88-245
1c
1n7zC02
C:88-245
1d
1n7zD02
D:88-245
Architecture
:
Sandwich
(5577)
Topology
:
baseplate structural protein gp8, domain 1
(3)
Homologous Superfamily
:
baseplate structural protein gp8, domain 1
(3)
Enterobacteria phage t4. Organism_taxid: 10665.
(3)
2a
1n7zA01
A:12-87,A:246-334
2b
1n7zB01
B:12-87,B:246-334
2c
1n7zC01
C:12-87,C:246-334
2d
1n7zD01
D:12-87,D:246-334
[
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Pfam Domains
(0, 0)
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all PFAM domains
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Asymmetric Unit 1
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