Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asym.Unit - manually
(-)Asymmetric Unit
(-)Asym. Unit - sites
(-)Biological Unit 1
(-)Biol. Unit 1 - sites
(-)Biological Unit 2
(-)Biological Unit 3
collapse expand < >
Image Asym.Unit - manually
Asym.Unit - manually  (Jmol Viewer)
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Asym. Unit - sites
Asym. Unit - sites  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biol. Unit 1 - sites
Biol. Unit 1 - sites  (Jmol Viewer)
Image Biological Unit 2
Biological Unit 2  (Jmol Viewer)
Image Biological Unit 3
Biological Unit 3  (Jmol Viewer)

(-) Description

Title :  BACTERIOPHAGE T4 BASEPLATE STRUCTURAL PROTEIN GP8
 
Authors :  P. G. Leiman, M. M. Shneider, V. A. Kostyuchenko, P. R. Chipman, V. V. Mesyanzhinov, M. G. Rossmann
Date :  18 Nov 02  (Deposition) - 10 Jun 03  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.45
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Biol. Unit 3:  A,B,C,D  (1x)
Keywords :  Bacteriophage T4, Baseplate, Dimer, Beta Sandwich, Halide Binding, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. G. Leiman, M. M. Shneider, V. A. Kostyuchenko, P. R. Chipman, V. V. Mesyanzhinov, M. G. Rossmann
Structure And Location Of Gene Product 8 In The Bacteriophage T4 Baseplate
J. Mol. Biol. V. 328 821 2003
PubMed-ID: 12729757  |  Reference-DOI: 10.1016/S0022-2836(03)00366-8
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - BASEPLATE STRUCTURAL PROTEIN GP8
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET-22B(+)
    Expression System Strain: BL21 (DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: GENE 8
    Organism Scientific: ENTEROBACTERIA PHAGE T4
    Organism Taxid: 10665
    Synonym: BASEPLATE WEDGE PROTEIN 8

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD
Biological Unit 3 (1x): ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 32)

Asymmetric Unit (1, 32)
No.NameCountTypeFull Name
1CL32Ligand/IonCHLORIDE ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
Biological Unit 3 (0, 0)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION

(-) Sites  (30, 30)

Asymmetric Unit (30, 30)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASP A:102 , PRO A:103 , TYR A:104 , THR A:105BINDING SITE FOR RESIDUE CL A 335
02AC2SOFTWAREHOH A:348 , ARG B:92BINDING SITE FOR RESIDUE CL B 335
03AC3SOFTWARELEU A:22 , ASN A:23 , ASN A:26 , ASN B:35BINDING SITE FOR RESIDUE CL A 336
04AC4SOFTWARESER A:64 , VAL A:65BINDING SITE FOR RESIDUE CL A 337
05AC5SOFTWAREASN A:26BINDING SITE FOR RESIDUE CL A 338
06AC6SOFTWAREARG A:202BINDING SITE FOR RESIDUE CL A 340
07AC7SOFTWAREPRO A:83 , SER A:84 , HOH A:400BINDING SITE FOR RESIDUE CL A 341
08AC8SOFTWAREALA A:281 , LYS A:282 , MET A:303BINDING SITE FOR RESIDUE CL A 342
09AC9SOFTWAREHOH A:468BINDING SITE FOR RESIDUE CL A 343
10BC1SOFTWAREASP B:102 , PRO B:103 , TYR B:104 , THR B:105BINDING SITE FOR RESIDUE CL B 336
11BC2SOFTWARESER B:64 , VAL B:65BINDING SITE FOR RESIDUE CL B 337
12BC3SOFTWAREGLU B:214 , HOH B:411BINDING SITE FOR RESIDUE CL B 338
13BC4SOFTWARELYS A:15 , ARG A:241BINDING SITE FOR RESIDUE CL A 344
14BC5SOFTWARESER B:84BINDING SITE FOR RESIDUE CL B 339
15BC6SOFTWAREALA B:281 , LYS B:282 , MET B:303BINDING SITE FOR RESIDUE CL B 340
16BC7SOFTWAREPRO C:103 , TYR C:104 , HOH C:379BINDING SITE FOR RESIDUE CL C 335
17BC8SOFTWAREARG D:92 , HOH D:345BINDING SITE FOR RESIDUE CL D 335
18BC9SOFTWARELEU C:22 , ASN C:23 , ASN C:26BINDING SITE FOR RESIDUE CL C 336
19CC1SOFTWARETRP C:212 , PRO C:213 , GLU C:214BINDING SITE FOR RESIDUE CL C 337
20CC2SOFTWAREHOH C:358BINDING SITE FOR RESIDUE CL C 338
21CC3SOFTWAREARG C:202 , HOH C:438BINDING SITE FOR RESIDUE CL C 339
22CC4SOFTWAREPRO C:83 , SER C:84BINDING SITE FOR RESIDUE CL C 340
23CC5SOFTWARELYS C:282BINDING SITE FOR RESIDUE CL C 341
24CC6SOFTWAREASP D:102 , PRO D:103 , TYR D:104 , THR D:105BINDING SITE FOR RESIDUE CL D 336
25CC7SOFTWAREASN C:35 , HOH C:378 , LEU D:22 , ASN D:23 , ASN D:26BINDING SITE FOR RESIDUE CL D 337
26CC8SOFTWARELYS C:15 , LYS C:243BINDING SITE FOR RESIDUE CL C 342
27CC9SOFTWARETRP D:212 , GLU D:214BINDING SITE FOR RESIDUE CL D 338
28DC1SOFTWAREARG D:202BINDING SITE FOR RESIDUE CL D 340
29DC2SOFTWAREPRO D:83 , SER D:84BINDING SITE FOR RESIDUE CL D 341
30DC3SOFTWAREPRO D:83BINDING SITE FOR RESIDUE CL D 342

(-) SS Bonds  (4, 4)

Asymmetric Unit
No.Residues
1A:142 -A:153
2B:142 -B:153
3C:142 -C:153
4D:142 -D:153

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1N80)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1N80)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1N80)

(-) Exons   (0, 0)

(no "Exon" information available for 1N80)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:328
 aligned with BP08_BPT4 | P19062 from UniProtKB/Swiss-Prot  Length:334

    Alignment length:328
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326        
            BP08_BPT4     7 IYRAIVTSKFRTEKMLNFYNSIGSGPDKNTIFITFGRSEPWSSNENEVGFAPPYPTDSVLGVTDMWTHMMGTVKVLPSMLDAVIPRRDWGDTRYPDPYTFRINDIVVCNSAPYNATESGAGWLVYRCLDVPDTGMCSIASLTDKDECLKLGGKWTPSARSMTPPEGRGDAEGTIEPGDGYVWEYLFEIPPDVSINRCTNEYIVVPWPEELKEDPTRWGYEDNLTWQQDDFGLIYRVKANTIRFKAYLDSVYFPEAALPGNKGFRQISIITNPLEAKAHPNDPNVKAEKDYYDPEDLMRHSGEMIYMENRPPIIMAMDQTEEINILFTF 334
               SCOP domains d1n80a_ A: Baseplate structural protein gp8                                                                                                                                                                                                                                                                                              SCOP domains
               CATH domains -----1n80A01 A:12-87,A:246-334 baseplate structural protein gp8, domain 1        1n80A02 A:88-245 baseplate structural protein gp8, domain 2                                                                                                   1n80A01 A:12-87,A:246-334 baseplate structural protein gp8, domain 1                      CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeehhhhhhhhhhhhhhhh........eeeeee.....................hhhhhhhhhhheeeeeeehhh.eeeeee...................eeee.............eeeeeeee....eee......hhhhhhhhh..eee................ee......eeeeeeeehhhhhhhh....eee..hhhhhhhh..........hhhhhh.hhhhhh...eeeeeeeee.hhhhhhh......eeeeeeee...................eehhhhh.....eeeeeeeeeee......eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1n80 A   7 IYRAIVTSKFRTEKMLNFYNSIGSGPDKNTIFITFGRSEPWSSNENEVGFAPPYPTDSVLGVTDMWTHMMGTVKVLPSMLDAVIPRRDWGDTRYPDPYTFRINDIVVCNSAPYNATESGAGWLVYRCLDVPDTGMCSIASLTDKDECLKLGGKWTPSARSMTPPEGRGDAEGTIEPGDGYVWEYLFEIPPDVSINRCTNEYIVVPWPEELKEDPTRWGYEDNLTWQQDDFGLIYRVKANTIRFKAYLDSVYFPEAALPGNKGFRQISIITNPLEAKAHPNDPNVKAEKDYYDPEDLMRHSGEMIYMENRPPIIMAMDQTEEINILFTF 334
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326        


Chain B from PDB  Type:PROTEIN  Length:328
 aligned with BP08_BPT4 | P19062 from UniProtKB/Swiss-Prot  Length:334

    Alignment length:328
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326        
            BP08_BPT4     7 IYRAIVTSKFRTEKMLNFYNSIGSGPDKNTIFITFGRSEPWSSNENEVGFAPPYPTDSVLGVTDMWTHMMGTVKVLPSMLDAVIPRRDWGDTRYPDPYTFRINDIVVCNSAPYNATESGAGWLVYRCLDVPDTGMCSIASLTDKDECLKLGGKWTPSARSMTPPEGRGDAEGTIEPGDGYVWEYLFEIPPDVSINRCTNEYIVVPWPEELKEDPTRWGYEDNLTWQQDDFGLIYRVKANTIRFKAYLDSVYFPEAALPGNKGFRQISIITNPLEAKAHPNDPNVKAEKDYYDPEDLMRHSGEMIYMENRPPIIMAMDQTEEINILFTF 334
               SCOP domains d1n80b_ B: Baseplate structural protein gp8                                                                                                                                                                                                                                                                                              SCOP domains
               CATH domains -----1n80B01 B:12-87,B:246-334 baseplate structural protein gp8, domain 1        1n80B02 B:88-245 baseplate structural protein gp8, domain 2                                                                                                   1n80B01 B:12-87,B:246-334 baseplate structural protein gp8, domain 1                      CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee.hhhhhhhhhhhhhhh........eeeeee.....................hhhhhhhhhhh..eeee.hhh.eeeeee...................eeee.............eeeeeeee....ee...................ee................ee......eeeeeeeehhhhhhhh....eee..hhhhhhhhhhhhh.....hhhhhh.hhhhhh...eeeeeeeee.hhh..........eeeeeeee...................ee..........eeeeeeeeeee......eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1n80 B   7 IYRAIVTSKFRTEKMLNFYNSIGSGPDKNTIFITFGRSEPWSSNENEVGFAPPYPTDSVLGVTDMWTHMMGTVKVLPSMLDAVIPRRDWGDTRYPDPYTFRINDIVVCNSAPYNATESGAGWLVYRCLDVPDTGMCSIASLTDKDECLKLGGKWTPSARSMTPPEGRGDAEGTIEPGDGYVWEYLFEIPPDVSINRCTNEYIVVPWPEELKEDPTRWGYEDNLTWQQDDFGLIYRVKANTIRFKAYLDSVYFPEAALPGNKGFRQISIITNPLEAKAHPNDPNVKAEKDYYDPEDLMRHSGEMIYMENRPPIIMAMDQTEEINILFTF 334
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326        


Chain C from PDB  Type:PROTEIN  Length:328
 aligned with BP08_BPT4 | P19062 from UniProtKB/Swiss-Prot  Length:334

    Alignment length:328
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326        
            BP08_BPT4     7 IYRAIVTSKFRTEKMLNFYNSIGSGPDKNTIFITFGRSEPWSSNENEVGFAPPYPTDSVLGVTDMWTHMMGTVKVLPSMLDAVIPRRDWGDTRYPDPYTFRINDIVVCNSAPYNATESGAGWLVYRCLDVPDTGMCSIASLTDKDECLKLGGKWTPSARSMTPPEGRGDAEGTIEPGDGYVWEYLFEIPPDVSINRCTNEYIVVPWPEELKEDPTRWGYEDNLTWQQDDFGLIYRVKANTIRFKAYLDSVYFPEAALPGNKGFRQISIITNPLEAKAHPNDPNVKAEKDYYDPEDLMRHSGEMIYMENRPPIIMAMDQTEEINILFTF 334
               SCOP domains d1n80c_ C: Baseplate structural protein gp8                                                                                                                                                                                                                                                                                              SCOP domains
               CATH domains -----1n80C01 C:12-87,C:246-334 baseplate structural protein gp8, domain 1        1n80C02 C:88-245 baseplate structural protein gp8, domain 2                                                                                                   1n80C01 C:12-87,C:246-334 baseplate structural protein gp8, domain 1                      CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeehhhhhhhhhhhhhhhh........eeeeee.....................hhhhhhhhhhheeeeee.hhh.eeeeee...................eeee.............eeeee.......ee.......hhhhhhhhh...ee................ee.......eeeeeeehhhhhhhh....eeee.hhhhhhhhhhhhh.....hhhhhh.hhhhhh...eeeeeeeee.hhh..........eeeeeeee...................eehhhhh.....eeeeeeeeeee......eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1n80 C   7 IYRAIVTSKFRTEKMLNFYNSIGSGPDKNTIFITFGRSEPWSSNENEVGFAPPYPTDSVLGVTDMWTHMMGTVKVLPSMLDAVIPRRDWGDTRYPDPYTFRINDIVVCNSAPYNATESGAGWLVYRCLDVPDTGMCSIASLTDKDECLKLGGKWTPSARSMTPPEGRGDAEGTIEPGDGYVWEYLFEIPPDVSINRCTNEYIVVPWPEELKEDPTRWGYEDNLTWQQDDFGLIYRVKANTIRFKAYLDSVYFPEAALPGNKGFRQISIITNPLEAKAHPNDPNVKAEKDYYDPEDLMRHSGEMIYMENRPPIIMAMDQTEEINILFTF 334
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326        


Chain D from PDB  Type:PROTEIN  Length:328
 aligned with BP08_BPT4 | P19062 from UniProtKB/Swiss-Prot  Length:334

    Alignment length:328
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326        
            BP08_BPT4     7 IYRAIVTSKFRTEKMLNFYNSIGSGPDKNTIFITFGRSEPWSSNENEVGFAPPYPTDSVLGVTDMWTHMMGTVKVLPSMLDAVIPRRDWGDTRYPDPYTFRINDIVVCNSAPYNATESGAGWLVYRCLDVPDTGMCSIASLTDKDECLKLGGKWTPSARSMTPPEGRGDAEGTIEPGDGYVWEYLFEIPPDVSINRCTNEYIVVPWPEELKEDPTRWGYEDNLTWQQDDFGLIYRVKANTIRFKAYLDSVYFPEAALPGNKGFRQISIITNPLEAKAHPNDPNVKAEKDYYDPEDLMRHSGEMIYMENRPPIIMAMDQTEEINILFTF 334
               SCOP domains d1n80d_ D: Baseplate structural protein gp8                                                                                                                                                                                                                                                                                              SCOP domains
               CATH domains -----1n80D01 D:12-87,D:246-334 baseplate structural protein gp8, domain 1        1n80D02 D:88-245 baseplate structural protein gp8, domain 2                                                                                                   1n80D01 D:12-87,D:246-334 baseplate structural protein gp8, domain 1                      CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeehhhhhhhhhhhhhhh.........eeeeee.....................hhhhhhhhhhheeeeee.hhh.eeeeee...................eeee.............eeeeeeee...............hhhhhh......................ee......eeeeeeeehhhhhhhhh...eeee.hhhhhhhhhhhhh.....hhhhhh.hhhhhh...eeeeeeeee.hhhhhhhh.....eeeeeeee...................eehhhhh.....eeeeeeeeeee......eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1n80 D   7 IYRAIVTSKFRTEKMLNFYNSIGSGPDKNTIFITFGRSEPWSSNENEVGFAPPYPTDSVLGVTDMWTHMMGTVKVLPSMLDAVIPRRDWGDTRYPDPYTFRINDIVVCNSAPYNATESGAGWLVYRCLDVPDTGMCSIASLTDKDECLKLGGKWTPSARSMTPPEGRGDAEGTIEPGDGYVWEYLFEIPPDVSINRCTNEYIVVPWPEELKEDPTRWGYEDNLTWQQDDFGLIYRVKANTIRFKAYLDSVYFPEAALPGNKGFRQISIITNPLEAKAHPNDPNVKAEKDYYDPEDLMRHSGEMIYMENRPPIIMAMDQTEEINILFTF 334
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (2, 8)

Asymmetric Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1N80)

(-) Gene Ontology  (2, 2)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (BP08_BPT4 | P19062)
biological process
    GO:0019076    viral release from host cell    The dissemination of mature viral particles from the host cell, e.g. by cell lysis or the budding of virus particles from the cell membrane.
cellular component
    GO:0019012    virion    The complete fully infectious extracellular virus particle.

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    CL  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
    AC9  [ RasMol ]  +environment [ RasMol ]
    BC1  [ RasMol ]  +environment [ RasMol ]
    BC2  [ RasMol ]  +environment [ RasMol ]
    BC3  [ RasMol ]  +environment [ RasMol ]
    BC4  [ RasMol ]  +environment [ RasMol ]
    BC5  [ RasMol ]  +environment [ RasMol ]
    BC6  [ RasMol ]  +environment [ RasMol ]
    BC7  [ RasMol ]  +environment [ RasMol ]
    BC8  [ RasMol ]  +environment [ RasMol ]
    BC9  [ RasMol ]  +environment [ RasMol ]
    CC1  [ RasMol ]  +environment [ RasMol ]
    CC2  [ RasMol ]  +environment [ RasMol ]
    CC3  [ RasMol ]  +environment [ RasMol ]
    CC4  [ RasMol ]  +environment [ RasMol ]
    CC5  [ RasMol ]  +environment [ RasMol ]
    CC6  [ RasMol ]  +environment [ RasMol ]
    CC7  [ RasMol ]  +environment [ RasMol ]
    CC8  [ RasMol ]  +environment [ RasMol ]
    CC9  [ RasMol ]  +environment [ RasMol ]
    DC1  [ RasMol ]  +environment [ RasMol ]
    DC2  [ RasMol ]  +environment [ RasMol ]
    DC3  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 1n80)
 
Biological Units
  Complete Structure
    Biological Unit 1  [ Jena3D ]
    Biological Unit 2  [ Jena3D ]
    Biological Unit 3  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ Asym. Unit PNG format | Asym. Unit - sites PNG format | Biol. Unit 1 PNG format | Biol. Unit 1 - sites PNG format | Biol. Unit 2 PNG format | Biol. Unit 3 PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  1n80
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  BP08_BPT4 | P19062
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  (no 'Enzyme Classificator' available)
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  BP08_BPT4 | P19062
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        BP08_BPT4 | P19062: 1n7z 1n8b 1pdm 1tja 5hx2 5iv5 5iv7

(-) Related Entries Specified in the PDB File

1n7z SEMET DERIVATIVE OF BACTERIOPHAGE T4 BASEPLATE STRUCTURAL PROTEIN GP8