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(-) Description

Title :  E-DREI
 
Authors :  B. S. Chevalier, T. Kortemme, M. S. Chadsey, D. Baker, R. J. Monnat Jr. , B. L. Stoddard
Date :  10 Sep 02  (Deposition) - 29 Nov 02  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.40
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1:  A,B,C  (1x)
Biol. Unit 2:  D,E,F  (1x)
Biol. Unit 3:  G,H,I  (1x)
Biol. Unit 4:  J,K,L  (1x)
Keywords :  Laglidadg, Homing, Engineering, Design, Endonuclease, Hydrolase-Dna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  B. S. Chevalier, T. Kortemme, M. S. Chadsey, D. Baker, R. J. Monnat Jr. B. L. Stoddard
Design, Activity And Structure Of A Highly Specific Artificial Endonuclease
Mol. Cell V. 10 895 2002
PubMed-ID: 12419232  |  Reference-DOI: 10.1016/S1097-2765(02)00690-1

(-) Compounds

Molecule 1 - 5'-D(*CP*CP*AP*AP*AP*CP*TP*GP*TP*CP*TP*CP*AP*AP*GP*TP*TP*CP *CP*GP*GP*CP*G)-3'
    Chains: B, E, H, K
    Engineered: YES
    Other Details: DNA TARGET SITE (TOP STRAND)
    Synthetic: YES
 
Molecule 2 - 5'-D(*CP*GP*CP*CP*GP*GP*AP*AP*CP*TP*TP*GP*AP*GP*AP*CP*AP*GP *TP*TP*TP*GP*G)-3'
    Chains: C, F, I, L
    Engineered: YES
    Other Details: DNA TARGET SITE (BOTTOM STRAND)
    Synthetic: YES
 
Molecule 3 - CHIMERA OF HOMING ENDONUCLEASE I-DMOI AND DNA ENDONUCLEASE I-CREI
    Chains: A, D, G, J
    EC Number: 3.1.-.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PDRE16
    Expression System Strain: BL21[DE3]
    Expression System Taxid: 562
    Expression System Vector Type: T7
    Organism Common: ,
    Organism Scientific: DESULFUROCOCCUS MOBILIS, CHLAMYDOMONAS REINHARDTII
    Organism Taxid: 2274,3055
    Other Details: THE CHIMERA CONTAINS LARGE DOMAIN OF I-DMOI FUSED TO ONE SUBUNIT OF I-CREI: E-DREI PROTEIN
    Strain: ,

 Structural Features

(-) Chains, Units

  123456789101112
Asymmetric Unit : ABCDEFGHIJKL
Biological Unit 1 (1x): ABC         
Biological Unit 2 (1x):    DEF      
Biological Unit 3 (1x):       GHI   
Biological Unit 4 (1x):          JKL

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 34)

Asymmetric Unit (3, 34)
No.NameCountTypeFull Name
1GOL18Ligand/IonGLYCEROL
2MG6Ligand/IonMAGNESIUM ION
3SO410Ligand/IonSULFATE ION
Biological Unit 1 (2, 15)
No.NameCountTypeFull Name
1GOL9Ligand/IonGLYCEROL
2MG-1Ligand/IonMAGNESIUM ION
3SO46Ligand/IonSULFATE ION
Biological Unit 2 (2, 13)
No.NameCountTypeFull Name
1GOL9Ligand/IonGLYCEROL
2MG-1Ligand/IonMAGNESIUM ION
3SO44Ligand/IonSULFATE ION
Biological Unit 3 (0, 0)
No.NameCountTypeFull Name
1GOL-1Ligand/IonGLYCEROL
2MG-1Ligand/IonMAGNESIUM ION
3SO4-1Ligand/IonSULFATE ION
Biological Unit 4 (0, 0)
No.NameCountTypeFull Name
1GOL-1Ligand/IonGLYCEROL
2MG-1Ligand/IonMAGNESIUM ION
3SO4-1Ligand/IonSULFATE ION

(-) Sites  (34, 34)

Asymmetric Unit (34, 34)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASP A:21 , GLY A:116 , MG A:372 , HOH A:2058 , DA B:314 , DG C:414 , HOH C:2411BINDING SITE FOR RESIDUE MG A 371
02AC2SOFTWAREGLY A:20 , ASP A:21 , GLY A:116 , ASP A:117 , MG A:371 , MG A:373 , DA B:314 , DG B:315 , DA C:413 , DG C:414BINDING SITE FOR RESIDUE MG A 372
03AC3SOFTWAREGLY A:20 , ASP A:117 , MG A:372 , DG B:315 , DA C:413 , HOH C:2095BINDING SITE FOR RESIDUE MG A 373
04AC4SOFTWAREASP D:521 , GLY D:616 , HOH D:2224 , DA E:814 , DG F:914 , HOH F:2410BINDING SITE FOR RESIDUE MG D 374
05AC5SOFTWAREMG D:376 , GLY D:520 , ASP D:521 , ASP D:617 , DA E:814 , DG E:815 , DA F:913 , DG F:914BINDING SITE FOR RESIDUE MG E 375
06AC6SOFTWAREGLY D:520 , ASP D:617 , MG E:375 , DG E:815 , DA F:913 , HOH F:2173BINDING SITE FOR RESIDUE MG D 376
07AC7SOFTWAREPHE A:51 , ARG A:55 , HOH A:2205 , HOH A:2232 , HOH A:2281BINDING SITE FOR RESIDUE SO4 A 271
08AC8SOFTWARESER A:44 , GLU A:45 , ASN A:46 , HOH A:2212BINDING SITE FOR RESIDUE SO4 A 272
09AC9SOFTWAREARG D:597 , ARG D:605 , ARG D:746 , HOH D:2045 , HOH D:2105 , HOH D:2196 , HOH D:2279 , HOH D:2387 , HOH D:2438BINDING SITE FOR RESIDUE SO4 D 273
10BC1SOFTWARESER D:544 , GLU D:545 , ASN D:546 , HOH D:2283BINDING SITE FOR RESIDUE SO4 D 274
11BC2SOFTWAREASN A:64 , VAL A:65 , LYS A:66 , LYS A:86 , HOH A:2216 , HOH C:2055 , GOL E:771BINDING SITE FOR RESIDUE SO4 A 275
12BC3SOFTWAREASN A:64 , LYS A:66 , LYS A:239BINDING SITE FOR RESIDUE SO4 A 276
13BC4SOFTWAREARG A:97 , ARG A:105 , GLU A:243 , ARG A:246 , HOH A:2403 , HOH A:2409BINDING SITE FOR RESIDUE SO4 A 277
14BC5SOFTWAREGLN D:550 , LYS D:697BINDING SITE FOR RESIDUE SO4 D 278
15BC6SOFTWARELEU D:600 , PHE D:601 , ASN D:602 , ARG D:605BINDING SITE FOR RESIDUE SO4 D 279
16BC7SOFTWAREGLN A:50 , LYS A:197 , HOH A:2308BINDING SITE FOR RESIDUE SO4 A 280
17BC8SOFTWAREVAL D:507 , ASP D:727 , THR D:741 , HOH D:2065 , HOH D:2326 , HOH D:2438BINDING SITE FOR RESIDUE GOL D 761
18BC9SOFTWAREDC B:312 , DA B:313 , DT C:411 , DG C:412BINDING SITE FOR RESIDUE GOL B 762
19CC1SOFTWARETRP D:519 , ARG D:648 , HOH D:2132 , HOH D:2148 , HOH D:2314BINDING SITE FOR RESIDUE GOL D 763
20CC2SOFTWAREGLU D:505 , GOL D:776 , HOH D:2305 , HOH D:2421 , HOH D:2422BINDING SITE FOR RESIDUE GOL D 764
21CC3SOFTWAREGLY A:23 , LEU A:24 , ARG A:148 , HOH A:2330 , DT B:316BINDING SITE FOR RESIDUE GOL A 765
22CC4SOFTWAREGLU D:505 , GLY D:509 , ILE D:510 , TYR D:513 , ARG D:555 , PHE D:691 , ASN D:693 , HOH D:2422BINDING SITE FOR RESIDUE GOL D 766
23CC5SOFTWAREGLU A:5 , TYR A:13 , ARG A:55 , PHE A:191 , ASN A:193BINDING SITE FOR RESIDUE GOL A 767
24CC6SOFTWARETYR A:89 , ASP A:250 , SER A:251 , LEU A:252 , HOH A:2155 , HOH A:2420BINDING SITE FOR RESIDUE GOL A 768
25CC7SOFTWARESER A:129 , DC B:301 , GOL B:775 , GLN D:628BINDING SITE FOR RESIDUE GOL A 769
26CC8SOFTWAREILE A:178 , LYS A:179 , HOH A:2366 , HOH A:2454 , DA B:303 , DA B:304 , DC F:901BINDING SITE FOR RESIDUE GOL A 770
27CC9SOFTWARESO4 A:275 , DC E:801 , HOH F:2448BINDING SITE FOR RESIDUE GOL E 771
28DC1SOFTWAREGLN A:57 , ILE A:69BINDING SITE FOR RESIDUE GOL A 772
29DC2SOFTWAREGLU A:5 , ILE A:10 , ARG A:55BINDING SITE FOR RESIDUE GOL A 773
30DC3SOFTWAREDA E:813 , DT F:911 , DG F:912BINDING SITE FOR RESIDUE GOL F 774
31DC4SOFTWAREGOL A:769 , DC B:301 , LYS D:585 , LYS D:586 , HOH F:2106BINDING SITE FOR RESIDUE GOL B 775
32DC5SOFTWAREGLN D:550 , PHE D:551 , ARG D:555 , GOL D:764 , GOL D:777 , HOH D:2421BINDING SITE FOR RESIDUE GOL D 776
33DC6SOFTWAREGLU D:505 , PRO D:554 , ARG D:555 , PHE D:558 , GOL D:776 , HOH D:2421BINDING SITE FOR RESIDUE GOL D 777
34DC7SOFTWARETYR D:589 , ASP D:750 , LEU D:752 , HOH D:2362BINDING SITE FOR RESIDUE GOL D 778

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1MOW)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1MOW)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1MOW)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1MOW)

(-) Exons   (0, 0)

(no "Exon" information available for 1MOW)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:248
 aligned with DNE1_CHLRE | P05725 from UniProtKB/Swiss-Prot  Length:163

    Alignment length:248
                                                                                                                             6                                                                                                                                                      
                                                                                      1  4                                  5| 7                                                                                                                                                    
                                     -         -         -         -         -        |2 |       -         -         -      || 7        17        27        37        47        57        67        77        87        97       107       117       127       137       147        
          DNE1_CHLRE      - ----------------------------------------------------------MNTK----------------------------------YN-KEFLLYLAGFVDGDGSIIAQIKPNQSYKFKHQLSLTFQVTQKTQRRWFLDKLVDEIGVGYVRDRGSVSDYILSEIKPLHNFLTQLQPFLKLKQKQANLVLKIIEQLPSAKESPDKFLEVCTWVDQIAALNDSKTRKTTSETVRAVLDSL  155
               SCOP domains d1mowa2 A:5-99 DNA endonuclease I-dmoI                                                         d1mowa1 A:100-252 DNA endonuclease I-CreI                                                                                                                 SCOP domains
               CATH domains 1mowA01 A:5-117 Homing endonucleases                                                                             1mowA02 A:118-252 Homing endonucleases                                                                                                  CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhheeeeeeee...eeeeeeeeee.hhhhhhhhhhhhhhhhhhhhh....eeeee....eeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhheeeeeeeee.......eeeeeeeeeeee..hhhhhhhhhhhhh..eeeee..eeeeee.hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1mow A    5 ENVSGISAYLLGLIWGDGGLYKLKYKGNRSEYRVVITQKSENLIKQFIAPRMQFLIDELNVKSKIQIVKGDTRYELRVSSKKLYYYFANMLERIRLFNGNRFLAYLAGIVDGDGSIIAQIKPNQSYKFKHQLSLTFQVTQKTERRWFLDKLVDEIGVGYVRDRGSVSDYILSEIKPLHNFLTQLQPFLNFKQKQANLVLKIIEQLPSAKESPDKFLEVCTWVDQIAALNDSKTRKTTSETVRAVLDSL  252
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244        


Chain B from PDB  Type:DNA  Length:23
                                                        
                1mow B  301 CCAAACTGTCTCAAGTTCCGGCG  323
                                   310       320   


Chain C from PDB  Type:DNA  Length:23
                                                        
                1mow C  401 CGCCGGAACTTGAGACAGTTTGG  423
                                   410       420   


Chain D from PDB  Type:PROTEIN  Length:248
 aligned with DNE1_CHLRE | P05725 from UniProtKB/Swiss-Prot  Length:163

    Alignment length:248
                                                                                                                             6                                                                                                                                                      
                                                                                      1  4                                  5| 7                                                                                                                                                    
                                     -         -         -         -         -        |2 |       -         -         -      || 7        17        27        37        47        57        67        77        87        97       107       117       127       137       147        
          DNE1_CHLRE      - ----------------------------------------------------------MNTK----------------------------------YN-KEFLLYLAGFVDGDGSIIAQIKPNQSYKFKHQLSLTFQVTQKTQRRWFLDKLVDEIGVGYVRDRGSVSDYILSEIKPLHNFLTQLQPFLKLKQKQANLVLKIIEQLPSAKESPDKFLEVCTWVDQIAALNDSKTRKTTSETVRAVLDSL  155
               SCOP domains d1mowd2 D:505-599 DNA endonuclease I-dmoI                                                      d1mowd1 D:600-752 DNA endonuclease I-CreI                                                                                                                 SCOP domains
               CATH domains 1mowD01 D:505-617 Homing endonucleases                                                                           1mowD02 D:618-752 Homing endonucleases                                                                                                  CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhheeeeeeee...eeeeeeeeee.hhhhhhhhhhhhhhhhhhhhh....eeeee....eeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhheeeeeeeee.......eeeeeeeeeeee..hhhhhhhhhhhhh..eeee...eeeeee.hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1mow D  505 ENVSGISAYLLGLIWGDGGLYKLKYKGNRSEYRVVITQKSENLIKQFIAPRMQFLIDELNVKSKIQIVKGDTRYELRVSSKKLYYYFANMLERIRLFNGNRFLAYLAGIVDGDGSIIAQIKPNQSYKFKHQLSLTFQVTQKTERRWFLDKLVDEIGVGYVRDRGSVSDYILSEIKPLHNFLTQLQPFLNFKQKQANLVLKIIEQLPSAKESPDKFLEVCTWVDQIAALNDSKTRKTTSETVRAVLDSL  752
                                   514       524       534       544       554       564       574       584       594       604       614       624       634       644       654       664       674       684       694       704       714       724       734       744        


Chain E from PDB  Type:DNA  Length:23
                                                        
                1mow E  801 CCAAACTGTCTCAAGTTCCGGCG  823
                                   810       820   


Chain F from PDB  Type:DNA  Length:23
                                                        
                1mow F  901 CGCCGGAACTTGAGACAGTTTGG  923
                                   910       920   


Chain G from PDB  Type:PROTEIN  Length:233
 aligned with DNE1_CHLRE | P05725 from UniProtKB/Swiss-Prot  Length:163

    Alignment length:239
                                                                                                                      6                                                                                                                                                    
                                                                                1  4                                 5| 7                                                                                                                                                  
                                     -         -         -         -         -  |  |   -         -         -         5| |     14        24        34        44        54        64        74        84        94       104       114       124       134       144         
          DNE1_CHLRE      - ----------------------------------------------------MNTK---------------------------------YN-KEFLLYLAGFVDGDGSIIAQIKPNQSYKFKHQLSLTFQVTQKTQRRWFLDKLVDEIGVGYVRDRGSVSDYILSEIKPLHNFLTQLQPFLKLKQKQANLVLKIIEQLPSAKESPDKFLEVCTWVDQIAALNDSKTRKTTSETVRAVLD  153
               SCOP domains d1mowg2 G:1007-1098 DNA endonuclease I-dmoI                                             d1mowg1 G:1100-1250 DNA endonuclease I-CreI                                                                                                             SCOP domains
               CATH domains 1mowG01 G:1007-1117 Homing endonucleases                                                                  1mowG02 G:1118-1250 Homing endonucl  eases                                                                                            CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhheeeeee...eeeeeeee..hhhhhhhhhhhhhhhhhhh.....eeeee....eeeeeehhhhhhhhhhhhhh....hhhhhhhhhhhhhhheeeeeeeee.......eeeeeeeeeee.hhhhh..--hhhhhh..eee..--.eeeee.hhhhhhhhhhhhhhhh..hhhhhhhhhhhhh-.....-hhhhhhhhhhhhhhhhhhh.......hhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1mow G 1007 VSGISAYLLGLIWGDGGLYKLNRSEYRVVITQKSENLIKQFIAPRMQFLIDELNVKSKIQIVKGDTRYELRVSSKKLYYYFANMLERILFNGNRFLAYLAGIVDGDGSIIAQIKPNQSYKFKHQLSLTFQVTQKTERRWFL--LVDEIGVGYVRDR--VSDYILSEIKPLHNFLTQLQPFLNFKQKQANLVLKIIE-LPSAK-SPDKFLEVCTWVDQIAALNDSKTRKTTSETVRAVLD 1250
                                  1016      1026||    1040      1050      1060      1070      1080      1090      1101      1111      1121      1131      1141      1151|  |  1161     |1171      1181      1191      1201     |1211 | |  1221      1231      1241         
                                             1027|                                                              1098|                                                1152  |        1167  |                                 1207 |   | |                                   
                                              1032                                                               1100                                                   1155           1170                                   1209   | |                                   
                                                                                                                                                                                                                                  1213 |                                   
                                                                                                                                                                                                                                    1215                                   


Chain H from PDB  Type:DNA  Length:23
                                                        
                1mow H 1301 CCAAACTGTCTCAAGTTCCGGCG 1323
                                  1310      1320   


Chain I from PDB  Type:DNA  Length:23
                                                        
                1mow I 1401 CGCCGGAACTTGAGACAGTTTGG 1423
                                  1410      1420   


Chain J from PDB  Type:PROTEIN  Length:234
 aligned with DNE1_CHLRE | P05725 from UniProtKB/Swiss-Prot  Length:163

    Alignment length:242
                                                                                                                       6                                                                                                                                                      
                                                                                  1 3      4                          5| 7                                                                                                                                                    
                                     -         -         -         -         -    | |  -   |     -         -         -|| |    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153  
          DNE1_CHLRE      - ------------------------------------------------------MNT------K--------------------------YN-KEFLLYLAGFVDGDGSIIAQIKPNQSYKFKHQLSLTFQVTQKTQRRWFLDKLVDEIGVGYVRDRGSVSDYILSEIKPLHNFLTQLQPFLKLKQKQANLVLKIIEQLPSAKESPDKFLEVCTWVDQIAALNDSKTRKTTSETVRAVLDSL  155
               SCOP domains d1mowj2 J:1506-1599 DNA endonuclease I-dmoI                                              d1mowj1 J:1600-1752 DNA endonuclease I-CreI                                                                                                               SCOP domains
               CATH domains 1mowJ01 J:1506-1617 Homing endonucleases                                                                   1mowJ02 J:1618-1752 Homing e  ndon    ucleases                                                                                          CATH domains
           Pfam domains (1) ---------------------------------------------------------------------------------------------------LAGLIDADG_1-1mowJ01 J:1610-1706                                                                  ---- --------------------------- ------------- Pfam domains (1)
           Pfam domains (2) ---------------------------------------------------------------------------------------------------LAGLIDADG_1-1mowJ02 J:1610-1706                                                                  ---- --------------------------- ------------- Pfam domains (2)
           Pfam domains (3) ---------------------------------------------------------------------------------------------------LAGLIDADG_1-1mowJ03 J:1610-1706                                                                  ---- --------------------------- ------------- Pfam domains (3)
           Pfam domains (4) ---------------------------------------------------------------------------------------------------LAGLIDADG_1-1mowJ04 J:1610-1706                                                                  ---- --------------------------- ------------- Pfam domains (4)
         Sec.struct. author hhhhhhhhhhhhhhhh..eeee.....eeee....hhhhhhhh.hhhhhhhhhhh....eeee.....eeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhheeeeeeeee.......eeeeeeeeeee.--....----.......eeeee..eeeee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh-hhhhhhhhhhhhhhhhhhhhhh.....-.hhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1mow J 1506 NVSGISAYLLGLIWGDGGLYKLKYNRSEYRVVTQKSENLIKQFIAPRMQFLIDELNVSKIQIVKDTRYELRVSSKKLYYYFANMLERIRLFNGNRFLAYLAGIVDGDGSIIAQIKPNQSYKFKHQLSLTFQVTQK--RRWF----VDEIGVGYVRDRGSVSDYILSEIKPLHNFLTQLQPFLNFKQKQANLVLKIIEQLP-AKESPDKFLEVCTWVDQIAALNDSKTR-TTSETVRAVLDSL 1752
                                  1515      1525   || 1537 ||   1548      1558      1569   || 1580      1590      1600      1610      1620      1630      1640    | 1650|    |1660      1670      1680      1690      1700      1710 |    1720      1730      1740      1750  
                                                1529|   1539|                    1565|  1573|                                                                  1645  |  | 1656                                                  1710 |                      1738 |            
                                                 1532    1541                     1567   1575                                                                     1648  |                                                         1712                        1740            
                                                                                                                                                                     1651                                                                                                     


Chain K from PDB  Type:DNA  Length:23
                                                        
                1mow K 1801 CCAAACTGTCTCAAGTTCCGGCG 1823
                                  1810      1820   


Chain L from PDB  Type:DNA  Length:23
                                                        
                1mow L 1901 CGCCGGAACTTGAGACAGTTTGG 1923
                                  1910      1920
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 8)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (1, 8)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)
(-)
Architecture: Roll (3276)
(-)
Topology: Endonuclease I-creI (41)
(-)
Homologous Superfamily: Homing endonucleases (40)
(-)
[unclassified] (18)
1a1mowG02G:1118-1250
1b1mowJ02J:1618-1752
1c1mowA02A:118-252
1d1mowD02D:618-752
1e1mowA01A:5-117
1f1mowD01D:505-617
1g1mowJ01J:1506-1617
1h1mowG01G:1007-1117

(-) Pfam Domains  (1, 4)

Asymmetric Unit
(-)
Clan: Homing_endonuc (19)

(-) Gene Ontology  (9, 14)

Asymmetric Unit(hide GO term definitions)
Chain A,D,G,J   (DNE1_CHLRE | P05725)
molecular function
    GO:0004519    endonuclease activity    Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0004518    nuclease activity    Catalysis of the hydrolysis of ester linkages within nucleic acids.
biological process
    GO:0006314    intron homing    Lateral transfer of an intron to a homologous allele that lacks the intron, mediated by a site-specific endonuclease encoded within the mobile intron.
    GO:0090305    nucleic acid phosphodiester bond hydrolysis    The nucleic acid metabolic process in which the phosphodiester bonds between nucleotides are cleaved by hydrolysis.
cellular component
    GO:0009507    chloroplast    A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma.
    GO:0009536    plastid    Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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        DMO1_DESMO | P21505: 1b24 2vs7 2vs8 4d6n 4d6o 4un7 4un8 4un9 4una 4unb 4unc 4ut0 5a0w 5ak9 5akf 5akm 5akn
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