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1MOW
Asym. Unit
Info
Asym.Unit (228 KB)
Biol.Unit 1 (70 KB)
Biol.Unit 2 (70 KB)
Biol.Unit 3 (45 KB)
Biol.Unit 4 (46 KB)
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(1)
Title
:
E-DREI
Authors
:
B. S. Chevalier, T. Kortemme, M. S. Chadsey, D. Baker, R. J. Monnat Jr. , B. L. Stoddard
Date
:
10 Sep 02 (Deposition) - 29 Nov 02 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B,C (1x)
Biol. Unit 2: D,E,F (1x)
Biol. Unit 3: G,H,I (1x)
Biol. Unit 4: J,K,L (1x)
Keywords
:
Laglidadg, Homing, Engineering, Design, Endonuclease, Hydrolase-Dna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. S. Chevalier, T. Kortemme, M. S. Chadsey, D. Baker, R. J. Monnat Jr. B. L. Stoddard
Design, Activity And Structure Of A Highly Specific Artificial Endonuclease
Mol. Cell V. 10 895 2002
[
close entry info
]
Hetero Components
(3, 34)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
1e: GLYCEROL (GOLe)
1f: GLYCEROL (GOLf)
1g: GLYCEROL (GOLg)
1h: GLYCEROL (GOLh)
1i: GLYCEROL (GOLi)
1j: GLYCEROL (GOLj)
1k: GLYCEROL (GOLk)
1l: GLYCEROL (GOLl)
1m: GLYCEROL (GOLm)
1n: GLYCEROL (GOLn)
1o: GLYCEROL (GOLo)
1p: GLYCEROL (GOLp)
1q: GLYCEROL (GOLq)
1r: GLYCEROL (GOLr)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
2c: MAGNESIUM ION (MGc)
2d: MAGNESIUM ION (MGd)
2e: MAGNESIUM ION (MGe)
2f: MAGNESIUM ION (MGf)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
3g: SULFATE ION (SO4g)
3h: SULFATE ION (SO4h)
3i: SULFATE ION (SO4i)
3j: SULFATE ION (SO4j)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
18
Ligand/Ion
GLYCEROL
2
MG
6
Ligand/Ion
MAGNESIUM ION
3
SO4
10
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(34, 34)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:21 , GLY A:116 , MG A:372 , HOH A:2058 , DA B:314 , DG C:414 , HOH C:2411
BINDING SITE FOR RESIDUE MG A 371
02
AC2
SOFTWARE
GLY A:20 , ASP A:21 , GLY A:116 , ASP A:117 , MG A:371 , MG A:373 , DA B:314 , DG B:315 , DA C:413 , DG C:414
BINDING SITE FOR RESIDUE MG A 372
03
AC3
SOFTWARE
GLY A:20 , ASP A:117 , MG A:372 , DG B:315 , DA C:413 , HOH C:2095
BINDING SITE FOR RESIDUE MG A 373
04
AC4
SOFTWARE
ASP D:521 , GLY D:616 , HOH D:2224 , DA E:814 , DG F:914 , HOH F:2410
BINDING SITE FOR RESIDUE MG D 374
05
AC5
SOFTWARE
MG D:376 , GLY D:520 , ASP D:521 , ASP D:617 , DA E:814 , DG E:815 , DA F:913 , DG F:914
BINDING SITE FOR RESIDUE MG E 375
06
AC6
SOFTWARE
GLY D:520 , ASP D:617 , MG E:375 , DG E:815 , DA F:913 , HOH F:2173
BINDING SITE FOR RESIDUE MG D 376
07
AC7
SOFTWARE
PHE A:51 , ARG A:55 , HOH A:2205 , HOH A:2232 , HOH A:2281
BINDING SITE FOR RESIDUE SO4 A 271
08
AC8
SOFTWARE
SER A:44 , GLU A:45 , ASN A:46 , HOH A:2212
BINDING SITE FOR RESIDUE SO4 A 272
09
AC9
SOFTWARE
ARG D:597 , ARG D:605 , ARG D:746 , HOH D:2045 , HOH D:2105 , HOH D:2196 , HOH D:2279 , HOH D:2387 , HOH D:2438
BINDING SITE FOR RESIDUE SO4 D 273
10
BC1
SOFTWARE
SER D:544 , GLU D:545 , ASN D:546 , HOH D:2283
BINDING SITE FOR RESIDUE SO4 D 274
11
BC2
SOFTWARE
ASN A:64 , VAL A:65 , LYS A:66 , LYS A:86 , HOH A:2216 , HOH C:2055 , GOL E:771
BINDING SITE FOR RESIDUE SO4 A 275
12
BC3
SOFTWARE
ASN A:64 , LYS A:66 , LYS A:239
BINDING SITE FOR RESIDUE SO4 A 276
13
BC4
SOFTWARE
ARG A:97 , ARG A:105 , GLU A:243 , ARG A:246 , HOH A:2403 , HOH A:2409
BINDING SITE FOR RESIDUE SO4 A 277
14
BC5
SOFTWARE
GLN D:550 , LYS D:697
BINDING SITE FOR RESIDUE SO4 D 278
15
BC6
SOFTWARE
LEU D:600 , PHE D:601 , ASN D:602 , ARG D:605
BINDING SITE FOR RESIDUE SO4 D 279
16
BC7
SOFTWARE
GLN A:50 , LYS A:197 , HOH A:2308
BINDING SITE FOR RESIDUE SO4 A 280
17
BC8
SOFTWARE
VAL D:507 , ASP D:727 , THR D:741 , HOH D:2065 , HOH D:2326 , HOH D:2438
BINDING SITE FOR RESIDUE GOL D 761
18
BC9
SOFTWARE
DC B:312 , DA B:313 , DT C:411 , DG C:412
BINDING SITE FOR RESIDUE GOL B 762
19
CC1
SOFTWARE
TRP D:519 , ARG D:648 , HOH D:2132 , HOH D:2148 , HOH D:2314
BINDING SITE FOR RESIDUE GOL D 763
20
CC2
SOFTWARE
GLU D:505 , GOL D:776 , HOH D:2305 , HOH D:2421 , HOH D:2422
BINDING SITE FOR RESIDUE GOL D 764
21
CC3
SOFTWARE
GLY A:23 , LEU A:24 , ARG A:148 , HOH A:2330 , DT B:316
BINDING SITE FOR RESIDUE GOL A 765
22
CC4
SOFTWARE
GLU D:505 , GLY D:509 , ILE D:510 , TYR D:513 , ARG D:555 , PHE D:691 , ASN D:693 , HOH D:2422
BINDING SITE FOR RESIDUE GOL D 766
23
CC5
SOFTWARE
GLU A:5 , TYR A:13 , ARG A:55 , PHE A:191 , ASN A:193
BINDING SITE FOR RESIDUE GOL A 767
24
CC6
SOFTWARE
TYR A:89 , ASP A:250 , SER A:251 , LEU A:252 , HOH A:2155 , HOH A:2420
BINDING SITE FOR RESIDUE GOL A 768
25
CC7
SOFTWARE
SER A:129 , DC B:301 , GOL B:775 , GLN D:628
BINDING SITE FOR RESIDUE GOL A 769
26
CC8
SOFTWARE
ILE A:178 , LYS A:179 , HOH A:2366 , HOH A:2454 , DA B:303 , DA B:304 , DC F:901
BINDING SITE FOR RESIDUE GOL A 770
27
CC9
SOFTWARE
SO4 A:275 , DC E:801 , HOH F:2448
BINDING SITE FOR RESIDUE GOL E 771
28
DC1
SOFTWARE
GLN A:57 , ILE A:69
BINDING SITE FOR RESIDUE GOL A 772
29
DC2
SOFTWARE
GLU A:5 , ILE A:10 , ARG A:55
BINDING SITE FOR RESIDUE GOL A 773
30
DC3
SOFTWARE
DA E:813 , DT F:911 , DG F:912
BINDING SITE FOR RESIDUE GOL F 774
31
DC4
SOFTWARE
GOL A:769 , DC B:301 , LYS D:585 , LYS D:586 , HOH F:2106
BINDING SITE FOR RESIDUE GOL B 775
32
DC5
SOFTWARE
GLN D:550 , PHE D:551 , ARG D:555 , GOL D:764 , GOL D:777 , HOH D:2421
BINDING SITE FOR RESIDUE GOL D 776
33
DC6
SOFTWARE
GLU D:505 , PRO D:554 , ARG D:555 , PHE D:558 , GOL D:776 , HOH D:2421
BINDING SITE FOR RESIDUE GOL D 777
34
DC7
SOFTWARE
TYR D:589 , ASP D:750 , LEU D:752 , HOH D:2362
BINDING SITE FOR RESIDUE GOL D 778
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d1mowa1 (A:100-252)
1b: SCOP_d1mowd1 (D:600-752)
1c: SCOP_d1mowg1 (G:1100-1250)
1d: SCOP_d1mowj1 (J:1600-1752)
2a: SCOP_d1mowa2 (A:5-99)
2b: SCOP_d1mowd2 (D:505-599)
2c: SCOP_d1mowg2 (G:1007-1098)
2d: SCOP_d1mowj2 (J:1506-1599)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Homing endonuclease-like
(42)
Superfamily
:
Homing endonucleases
(38)
Family
:
Group I mobile intron endonuclease
(29)
Protein domain
:
DNA endonuclease I-CreI
(11)
Green alga (Chlamydomonas reinhardtii) [TaxId: 3055]
(11)
1a
d1mowa1
A:100-252
1b
d1mowd1
D:600-752
1c
d1mowg1
G:1100-1250
1d
d1mowj1
J:1600-1752
Protein domain
:
DNA endonuclease I-dmoI
(2)
Desulfurococcus mobilis [TaxId: 2274]
(2)
2a
d1mowa2
A:5-99
2b
d1mowd2
D:505-599
2c
d1mowg2
G:1007-1098
2d
d1mowj2
J:1506-1599
[
close SCOP info
]
CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_1mowG02 (G:1118-1250)
1b: CATH_1mowJ02 (J:1618-1752)
1c: CATH_1mowA02 (A:118-252)
1d: CATH_1mowD02 (D:618-752)
1e: CATH_1mowA01 (A:5-117)
1f: CATH_1mowD01 (D:505-617)
1g: CATH_1mowJ01 (J:1506-1617)
1h: CATH_1mowG01 (G:1007-1117)
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Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Roll
(3276)
Topology
:
Endonuclease I-creI
(41)
Homologous Superfamily
:
Homing endonucleases
(40)
[unclassified]
(18)
1a
1mowG02
G:1118-1250
1b
1mowJ02
J:1618-1752
1c
1mowA02
A:118-252
1d
1mowD02
D:618-752
1e
1mowA01
A:5-117
1f
1mowD01
D:505-617
1g
1mowJ01
J:1506-1617
1h
1mowG01
G:1007-1117
[
close CATH info
]
Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_LAGLIDADG_1_1mowJ01 (J:1610-1706)
1b: PFAM_LAGLIDADG_1_1mowJ02 (J:1610-1706)
1c: PFAM_LAGLIDADG_1_1mowJ03 (J:1610-1706)
1d: PFAM_LAGLIDADG_1_1mowJ04 (J:1610-1706)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
Homing_endonuc
(19)
Family
:
LAGLIDADG_1
(11)
Chlamydomonas reinhardtii (Chlamydomonas smithii)
(10)
1a
LAGLIDADG_1-1mowJ01
J:1610-1706
1b
LAGLIDADG_1-1mowJ02
J:1610-1706
1c
LAGLIDADG_1-1mowJ03
J:1610-1706
1d
LAGLIDADG_1-1mowJ04
J:1610-1706
[
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]
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Chain G
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Chain J
Chain K
Chain L
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Asym.Unit (228 KB)
Header - Asym.Unit
Biol.Unit 1 (70 KB)
Header - Biol.Unit 1
Biol.Unit 2 (70 KB)
Header - Biol.Unit 2
Biol.Unit 3 (45 KB)
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Biol.Unit 4 (46 KB)
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