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1MOW
Biol. Unit 1
Info
Asym.Unit (228 KB)
Biol.Unit 1 (70 KB)
Biol.Unit 2 (70 KB)
Biol.Unit 3 (45 KB)
Biol.Unit 4 (46 KB)
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(1)
Title
:
E-DREI
Authors
:
B. S. Chevalier, T. Kortemme, M. S. Chadsey, D. Baker, R. J. Monnat Jr. , B. L. Stoddard
Date
:
10 Sep 02 (Deposition) - 29 Nov 02 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B,C (1x)
Biol. Unit 2: D,E,F (1x)
Biol. Unit 3: G,H,I (1x)
Biol. Unit 4: J,K,L (1x)
Keywords
:
Laglidadg, Homing, Engineering, Design, Endonuclease, Hydrolase-Dna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. S. Chevalier, T. Kortemme, M. S. Chadsey, D. Baker, R. J. Monnat Jr. B. L. Stoddard
Design, Activity And Structure Of A Highly Specific Artificial Endonuclease
Mol. Cell V. 10 895 2002
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Hetero Components
(2, 15)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
1e: GLYCEROL (GOLe)
1f: GLYCEROL (GOLf)
1g: GLYCEROL (GOLg)
1h: GLYCEROL (GOLh)
1i: GLYCEROL (GOLi)
1j: GLYCEROL (GOLj)
1k: GLYCEROL (GOLk)
1l: GLYCEROL (GOLl)
1m: GLYCEROL (GOLm)
1n: GLYCEROL (GOLn)
1o: GLYCEROL (GOLo)
1p: GLYCEROL (GOLp)
1q: GLYCEROL (GOLq)
1r: GLYCEROL (GOLr)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
2c: MAGNESIUM ION (MGc)
2d: MAGNESIUM ION (MGd)
2e: MAGNESIUM ION (MGe)
2f: MAGNESIUM ION (MGf)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
3g: SULFATE ION (SO4g)
3h: SULFATE ION (SO4h)
3i: SULFATE ION (SO4i)
3j: SULFATE ION (SO4j)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
9
Ligand/Ion
GLYCEROL
2
MG
-1
Ligand/Ion
MAGNESIUM ION
3
SO4
6
Ligand/Ion
SULFATE ION
[
close Hetero Component info
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Sites
(19, 19)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC7 (SOFTWARE)
05: AC8 (SOFTWARE)
06: BC2 (SOFTWARE)
07: BC3 (SOFTWARE)
08: BC4 (SOFTWARE)
09: BC7 (SOFTWARE)
10: BC9 (SOFTWARE)
11: CC3 (SOFTWARE)
12: CC5 (SOFTWARE)
13: CC6 (SOFTWARE)
14: CC7 (SOFTWARE)
15: CC8 (SOFTWARE)
16: CC9 (SOFTWARE)
17: DC1 (SOFTWARE)
18: DC2 (SOFTWARE)
19: DC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:21 , GLY A:116 , MG A:372 , HOH A:2058 , DA B:314 , DG C:414 , HOH C:2411
BINDING SITE FOR RESIDUE MG A 371
02
AC2
SOFTWARE
GLY A:20 , ASP A:21 , GLY A:116 , ASP A:117 , MG A:371 , MG A:373 , DA B:314 , DG B:315 , DA C:413 , DG C:414
BINDING SITE FOR RESIDUE MG A 372
03
AC3
SOFTWARE
GLY A:20 , ASP A:117 , MG A:372 , DG B:315 , DA C:413 , HOH C:2095
BINDING SITE FOR RESIDUE MG A 373
04
AC7
SOFTWARE
PHE A:51 , ARG A:55 , HOH A:2205 , HOH A:2232 , HOH A:2281
BINDING SITE FOR RESIDUE SO4 A 271
05
AC8
SOFTWARE
SER A:44 , GLU A:45 , ASN A:46 , HOH A:2212
BINDING SITE FOR RESIDUE SO4 A 272
06
BC2
SOFTWARE
ASN A:64 , VAL A:65 , LYS A:66 , LYS A:86 , HOH A:2216 , HOH C:2055 , GOL E:771
BINDING SITE FOR RESIDUE SO4 A 275
07
BC3
SOFTWARE
ASN A:64 , LYS A:66 , LYS A:239
BINDING SITE FOR RESIDUE SO4 A 276
08
BC4
SOFTWARE
ARG A:97 , ARG A:105 , GLU A:243 , ARG A:246 , HOH A:2403 , HOH A:2409
BINDING SITE FOR RESIDUE SO4 A 277
09
BC7
SOFTWARE
GLN A:50 , LYS A:197 , HOH A:2308
BINDING SITE FOR RESIDUE SO4 A 280
10
BC9
SOFTWARE
DC B:312 , DA B:313 , DT C:411 , DG C:412
BINDING SITE FOR RESIDUE GOL B 762
11
CC3
SOFTWARE
GLY A:23 , LEU A:24 , ARG A:148 , HOH A:2330 , DT B:316
BINDING SITE FOR RESIDUE GOL A 765
12
CC5
SOFTWARE
GLU A:5 , TYR A:13 , ARG A:55 , PHE A:191 , ASN A:193
BINDING SITE FOR RESIDUE GOL A 767
13
CC6
SOFTWARE
TYR A:89 , ASP A:250 , SER A:251 , LEU A:252 , HOH A:2155 , HOH A:2420
BINDING SITE FOR RESIDUE GOL A 768
14
CC7
SOFTWARE
SER A:129 , DC B:301 , GOL B:775 , GLN D:628
BINDING SITE FOR RESIDUE GOL A 769
15
CC8
SOFTWARE
ILE A:178 , LYS A:179 , HOH A:2366 , HOH A:2454 , DA B:303 , DA B:304 , DC F:901
BINDING SITE FOR RESIDUE GOL A 770
16
CC9
SOFTWARE
SO4 A:275 , DC E:801 , HOH F:2448
BINDING SITE FOR RESIDUE GOL E 771
17
DC1
SOFTWARE
GLN A:57 , ILE A:69
BINDING SITE FOR RESIDUE GOL A 772
18
DC2
SOFTWARE
GLU A:5 , ILE A:10 , ARG A:55
BINDING SITE FOR RESIDUE GOL A 773
19
DC4
SOFTWARE
GOL A:769 , DC B:301 , LYS D:585 , LYS D:586 , HOH F:2106
BINDING SITE FOR RESIDUE GOL B 775
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d1mowa1 (A:100-252)
1b: SCOP_d1mowd1 (D:600-752)
1c: SCOP_d1mowg1 (G:1100-1250)
1d: SCOP_d1mowj1 (J:1600-1752)
2a: SCOP_d1mowa2 (A:5-99)
2b: SCOP_d1mowd2 (D:505-599)
2c: SCOP_d1mowg2 (G:1007-1098)
2d: SCOP_d1mowj2 (J:1506-1599)
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Classes
(
)
(
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Folds
(
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(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Homing endonuclease-like
(42)
Superfamily
:
Homing endonucleases
(38)
Family
:
Group I mobile intron endonuclease
(29)
Protein domain
:
DNA endonuclease I-CreI
(11)
Green alga (Chlamydomonas reinhardtii) [TaxId: 3055]
(11)
1a
d1mowa1
A:100-252
1b
d1mowd1
D:600-752
1c
d1mowg1
G:1100-1250
1d
d1mowj1
J:1600-1752
Protein domain
:
DNA endonuclease I-dmoI
(2)
Desulfurococcus mobilis [TaxId: 2274]
(2)
2a
d1mowa2
A:5-99
2b
d1mowd2
D:505-599
2c
d1mowg2
G:1007-1098
2d
d1mowj2
J:1506-1599
[
close SCOP info
]
CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_1mowG02 (G:1118-1250)
1b: CATH_1mowJ02 (J:1618-1752)
1c: CATH_1mowA02 (A:118-252)
1d: CATH_1mowD02 (D:618-752)
1e: CATH_1mowA01 (A:5-117)
1f: CATH_1mowD01 (D:505-617)
1g: CATH_1mowJ01 (J:1506-1617)
1h: CATH_1mowG01 (G:1007-1117)
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Architectures
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Topologies
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)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Roll
(3276)
Topology
:
Endonuclease I-creI
(41)
Homologous Superfamily
:
Homing endonucleases
(40)
[unclassified]
(18)
1a
1mowG02
G:1118-1250
1b
1mowJ02
J:1618-1752
1c
1mowA02
A:118-252
1d
1mowD02
D:618-752
1e
1mowA01
A:5-117
1f
1mowD01
D:505-617
1g
1mowJ01
J:1506-1617
1h
1mowG01
G:1007-1117
[
close CATH info
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_LAGLIDADG_1_1mowJ01 (J:1610-1706)
1b: PFAM_LAGLIDADG_1_1mowJ02 (J:1610-1706)
1c: PFAM_LAGLIDADG_1_1mowJ03 (J:1610-1706)
1d: PFAM_LAGLIDADG_1_1mowJ04 (J:1610-1706)
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Clans
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(
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)
(
)
Organisms
(
)
(
)
Clan
:
Homing_endonuc
(19)
Family
:
LAGLIDADG_1
(11)
Chlamydomonas reinhardtii (Chlamydomonas smithii)
(10)
1a
LAGLIDADG_1-1mowJ01
J:1610-1706
1b
LAGLIDADG_1-1mowJ02
J:1610-1706
1c
LAGLIDADG_1-1mowJ03
J:1610-1706
1d
LAGLIDADG_1-1mowJ04
J:1610-1706
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