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1MOW
Biol. Unit 2
Info
Asym.Unit (228 KB)
Biol.Unit 1 (70 KB)
Biol.Unit 2 (70 KB)
Biol.Unit 3 (45 KB)
Biol.Unit 4 (46 KB)
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(1)
Title
:
E-DREI
Authors
:
B. S. Chevalier, T. Kortemme, M. S. Chadsey, D. Baker, R. J. Monnat Jr. , B. L. Stoddard
Date
:
10 Sep 02 (Deposition) - 29 Nov 02 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B,C (1x)
Biol. Unit 2: D,E,F (1x)
Biol. Unit 3: G,H,I (1x)
Biol. Unit 4: J,K,L (1x)
Keywords
:
Laglidadg, Homing, Engineering, Design, Endonuclease, Hydrolase-Dna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. S. Chevalier, T. Kortemme, M. S. Chadsey, D. Baker, R. J. Monnat Jr. B. L. Stoddard
Design, Activity And Structure Of A Highly Specific Artificial Endonuclease
Mol. Cell V. 10 895 2002
[
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Hetero Components
(2, 13)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
1e: GLYCEROL (GOLe)
1f: GLYCEROL (GOLf)
1g: GLYCEROL (GOLg)
1h: GLYCEROL (GOLh)
1i: GLYCEROL (GOLi)
1j: GLYCEROL (GOLj)
1k: GLYCEROL (GOLk)
1l: GLYCEROL (GOLl)
1m: GLYCEROL (GOLm)
1n: GLYCEROL (GOLn)
1o: GLYCEROL (GOLo)
1p: GLYCEROL (GOLp)
1q: GLYCEROL (GOLq)
1r: GLYCEROL (GOLr)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
2c: MAGNESIUM ION (MGc)
2d: MAGNESIUM ION (MGd)
2e: MAGNESIUM ION (MGe)
2f: MAGNESIUM ION (MGf)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
3g: SULFATE ION (SO4g)
3h: SULFATE ION (SO4h)
3i: SULFATE ION (SO4i)
3j: SULFATE ION (SO4j)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
9
Ligand/Ion
GLYCEROL
2
MG
-1
Ligand/Ion
MAGNESIUM ION
3
SO4
4
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(20, 20)
Info
All Sites
01: AC4 (SOFTWARE)
02: AC5 (SOFTWARE)
03: AC6 (SOFTWARE)
04: AC9 (SOFTWARE)
05: BC1 (SOFTWARE)
06: BC2 (SOFTWARE)
07: BC5 (SOFTWARE)
08: BC6 (SOFTWARE)
09: BC8 (SOFTWARE)
10: CC1 (SOFTWARE)
11: CC2 (SOFTWARE)
12: CC4 (SOFTWARE)
13: CC7 (SOFTWARE)
14: CC8 (SOFTWARE)
15: CC9 (SOFTWARE)
16: DC3 (SOFTWARE)
17: DC4 (SOFTWARE)
18: DC5 (SOFTWARE)
19: DC6 (SOFTWARE)
20: DC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC4
SOFTWARE
ASP D:521 , GLY D:616 , HOH D:2224 , DA E:814 , DG F:914 , HOH F:2410
BINDING SITE FOR RESIDUE MG D 374
02
AC5
SOFTWARE
MG D:376 , GLY D:520 , ASP D:521 , ASP D:617 , DA E:814 , DG E:815 , DA F:913 , DG F:914
BINDING SITE FOR RESIDUE MG E 375
03
AC6
SOFTWARE
GLY D:520 , ASP D:617 , MG E:375 , DG E:815 , DA F:913 , HOH F:2173
BINDING SITE FOR RESIDUE MG D 376
04
AC9
SOFTWARE
ARG D:597 , ARG D:605 , ARG D:746 , HOH D:2045 , HOH D:2105 , HOH D:2196 , HOH D:2279 , HOH D:2387 , HOH D:2438
BINDING SITE FOR RESIDUE SO4 D 273
05
BC1
SOFTWARE
SER D:544 , GLU D:545 , ASN D:546 , HOH D:2283
BINDING SITE FOR RESIDUE SO4 D 274
06
BC2
SOFTWARE
ASN A:64 , VAL A:65 , LYS A:66 , LYS A:86 , HOH A:2216 , HOH C:2055 , GOL E:771
BINDING SITE FOR RESIDUE SO4 A 275
07
BC5
SOFTWARE
GLN D:550 , LYS D:697
BINDING SITE FOR RESIDUE SO4 D 278
08
BC6
SOFTWARE
LEU D:600 , PHE D:601 , ASN D:602 , ARG D:605
BINDING SITE FOR RESIDUE SO4 D 279
09
BC8
SOFTWARE
VAL D:507 , ASP D:727 , THR D:741 , HOH D:2065 , HOH D:2326 , HOH D:2438
BINDING SITE FOR RESIDUE GOL D 761
10
CC1
SOFTWARE
TRP D:519 , ARG D:648 , HOH D:2132 , HOH D:2148 , HOH D:2314
BINDING SITE FOR RESIDUE GOL D 763
11
CC2
SOFTWARE
GLU D:505 , GOL D:776 , HOH D:2305 , HOH D:2421 , HOH D:2422
BINDING SITE FOR RESIDUE GOL D 764
12
CC4
SOFTWARE
GLU D:505 , GLY D:509 , ILE D:510 , TYR D:513 , ARG D:555 , PHE D:691 , ASN D:693 , HOH D:2422
BINDING SITE FOR RESIDUE GOL D 766
13
CC7
SOFTWARE
SER A:129 , DC B:301 , GOL B:775 , GLN D:628
BINDING SITE FOR RESIDUE GOL A 769
14
CC8
SOFTWARE
ILE A:178 , LYS A:179 , HOH A:2366 , HOH A:2454 , DA B:303 , DA B:304 , DC F:901
BINDING SITE FOR RESIDUE GOL A 770
15
CC9
SOFTWARE
SO4 A:275 , DC E:801 , HOH F:2448
BINDING SITE FOR RESIDUE GOL E 771
16
DC3
SOFTWARE
DA E:813 , DT F:911 , DG F:912
BINDING SITE FOR RESIDUE GOL F 774
17
DC4
SOFTWARE
GOL A:769 , DC B:301 , LYS D:585 , LYS D:586 , HOH F:2106
BINDING SITE FOR RESIDUE GOL B 775
18
DC5
SOFTWARE
GLN D:550 , PHE D:551 , ARG D:555 , GOL D:764 , GOL D:777 , HOH D:2421
BINDING SITE FOR RESIDUE GOL D 776
19
DC6
SOFTWARE
GLU D:505 , PRO D:554 , ARG D:555 , PHE D:558 , GOL D:776 , HOH D:2421
BINDING SITE FOR RESIDUE GOL D 777
20
DC7
SOFTWARE
TYR D:589 , ASP D:750 , LEU D:752 , HOH D:2362
BINDING SITE FOR RESIDUE GOL D 778
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d1mowa1 (A:100-252)
1b: SCOP_d1mowd1 (D:600-752)
1c: SCOP_d1mowg1 (G:1100-1250)
1d: SCOP_d1mowj1 (J:1600-1752)
2a: SCOP_d1mowa2 (A:5-99)
2b: SCOP_d1mowd2 (D:505-599)
2c: SCOP_d1mowg2 (G:1007-1098)
2d: SCOP_d1mowj2 (J:1506-1599)
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Homing endonuclease-like
(42)
Superfamily
:
Homing endonucleases
(38)
Family
:
Group I mobile intron endonuclease
(29)
Protein domain
:
DNA endonuclease I-CreI
(11)
Green alga (Chlamydomonas reinhardtii) [TaxId: 3055]
(11)
1a
d1mowa1
A:100-252
1b
d1mowd1
D:600-752
1c
d1mowg1
G:1100-1250
1d
d1mowj1
J:1600-1752
Protein domain
:
DNA endonuclease I-dmoI
(2)
Desulfurococcus mobilis [TaxId: 2274]
(2)
2a
d1mowa2
A:5-99
2b
d1mowd2
D:505-599
2c
d1mowg2
G:1007-1098
2d
d1mowj2
J:1506-1599
[
close SCOP info
]
CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_1mowG02 (G:1118-1250)
1b: CATH_1mowJ02 (J:1618-1752)
1c: CATH_1mowA02 (A:118-252)
1d: CATH_1mowD02 (D:618-752)
1e: CATH_1mowA01 (A:5-117)
1f: CATH_1mowD01 (D:505-617)
1g: CATH_1mowJ01 (J:1506-1617)
1h: CATH_1mowG01 (G:1007-1117)
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Topologies
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Homologous Superfamilies
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Roll
(3276)
Topology
:
Endonuclease I-creI
(41)
Homologous Superfamily
:
Homing endonucleases
(40)
[unclassified]
(18)
1a
1mowG02
G:1118-1250
1b
1mowJ02
J:1618-1752
1c
1mowA02
A:118-252
1d
1mowD02
D:618-752
1e
1mowA01
A:5-117
1f
1mowD01
D:505-617
1g
1mowJ01
J:1506-1617
1h
1mowG01
G:1007-1117
[
close CATH info
]
Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_LAGLIDADG_1_1mowJ01 (J:1610-1706)
1b: PFAM_LAGLIDADG_1_1mowJ02 (J:1610-1706)
1c: PFAM_LAGLIDADG_1_1mowJ03 (J:1610-1706)
1d: PFAM_LAGLIDADG_1_1mowJ04 (J:1610-1706)
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Clans
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(
)
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(
)
(
)
Organisms
(
)
(
)
Clan
:
Homing_endonuc
(19)
Family
:
LAGLIDADG_1
(11)
Chlamydomonas reinhardtii (Chlamydomonas smithii)
(10)
1a
LAGLIDADG_1-1mowJ01
J:1610-1706
1b
LAGLIDADG_1-1mowJ02
J:1610-1706
1c
LAGLIDADG_1-1mowJ03
J:1610-1706
1d
LAGLIDADG_1-1mowJ04
J:1610-1706
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Nucleic
Backbone
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Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain D
Chain E
Chain F
Asymmetric Unit 1
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