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(-) Description

Title :  STRUCTURE OF PYROCOCCUS ABYSSII SM PROTEIN IN COMPLEX WITH A URIDINE HEPTAMER
 
Authors :  S. Thore, C. Mayer, C. Sauter, S. Weeks, D. Suck
Date :  26 Jul 02  (Deposition) - 11 Feb 03  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.60
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U
Keywords :  Protein-Rna Complex, Sm Protein, Rna Binding Protein/Rna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Thore, C. Mayer, C. Sauter, S. Weeks, D. Suck
Crystal Structure Of Pyrococcus Abyssii Sm Core And Its Complex With Rna: Common Features Of Rna-Binding In Archaea And Eukarya
J. Biol. Chem. V. 278 1239 2003
PubMed-ID: 12409299  |  Reference-DOI: 10.1074/JBC.M207685200
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - 5'-R(P*UP*UP*UP*UP*UP*UP*U)-3'
    Chains: O, P, Q, R, S, T, U
    Engineered: YES
    Synthetic: YES
 
Molecule 2 - PUTATIVE SNRNP SM-LIKE PROTEIN
    Chains: A, B, C, D, E, F, G, H, I, J, K, L, M, N
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Organelle: PLASMID
    Expression System Strain: DE3
    Expression System Taxid: 562
    Expression System Vector Type: PET24
    Organism Scientific: PYROCOCCUS ABYSSI
    Organism Taxid: 29292
    Synonym: SM PROTEIN PA-SM1

 Structural Features

(-) Chains, Units

  123456789101112131415161718192021
Asymmetric/Biological Unit : ABCDEFGHIJKLMNOPQRSTU

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 21)

Asymmetric/Biological Unit (2, 21)
No.NameCountTypeFull Name
1CA7Ligand/IonCALCIUM ION
2U14Ligand/IonURIDINE-5'-MONOPHOSPHATE

(-) Sites  (21, 21)

Asymmetric Unit (21, 21)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREU O:2 , U O:3 , U O:4 , U O:5 , U O:6BINDING SITE FOR RESIDUE CA O 310
02AC2SOFTWAREU T:2 , U T:3 , U T:5BINDING SITE FOR RESIDUE CA T 320
03AC3SOFTWAREU P:2 , U P:3 , U P:5 , U P:6BINDING SITE FOR RESIDUE CA P 330
04AC4SOFTWAREU S:2 , U S:3 , U S:5 , U S:6BINDING SITE FOR RESIDUE CA S 340
05AC5SOFTWAREU U:2 , U U:3 , U U:5 , U U:6BINDING SITE FOR RESIDUE CA U 370
06AC6SOFTWAREU Q:2 , U Q:3 , U Q:5 , U Q:6BINDING SITE FOR RESIDUE CA Q 380
07AC7SOFTWAREU R:2 , U R:3 , U R:5 , U R:6BINDING SITE FOR RESIDUE CA R 390
08AC8SOFTWAREHIS A:137 , ASN A:139 , ARG A:163 , GLY A:164 , ASP A:165 , ARG B:263 , U B:411 , U G:416 , LEU G:738BINDING SITE FOR RESIDUE U A 410
09AC9SOFTWARELEU A:138 , U A:410 , HIS B:237 , ASN B:239 , ARG B:263 , GLY B:264 , ASP B:265 , HOH C:120 , U C:412BINDING SITE FOR RESIDUE U B 411
10BC1SOFTWAREILE B:236 , LEU B:238 , U B:411 , HOH C:120 , HIS C:337 , ASN C:339 , ARG C:363 , GLY C:364 , ASP C:365 , ARG D:463 , U D:476BINDING SITE FOR RESIDUE U C 412
11BC2SOFTWAREHOH C:133 , LEU C:338 , U C:412 , HIS D:437 , ASN D:439 , ARG D:463 , GLY D:464 , ASP D:465 , U E:414 , ARG E:563BINDING SITE FOR RESIDUE U D 476
12BC3SOFTWAREHOH D:9 , HIS D:437 , LEU D:438 , U D:476 , ASN E:539 , ARG E:563 , ASP E:565 , U F:415 , ARG F:663BINDING SITE FOR RESIDUE U E 414
13BC4SOFTWAREHOH E:180 , U E:414 , HIS E:537 , LEU E:538 , HIS F:637 , ASN F:639 , ARG F:663 , GLY F:664 , ASP F:665 , U G:416 , ARG G:763BINDING SITE FOR RESIDUE U F 415
14BC5SOFTWAREU A:410 , U F:415 , LEU F:638 , HIS G:737 , ASN G:739 , ARG G:763 , ASP G:765BINDING SITE FOR RESIDUE U G 416
15BC6SOFTWAREHIS H:137 , ASN H:139 , ARG H:163 , ASP H:165 , ARG I:263 , U I:418 , U M:423 , LEU N:738BINDING SITE FOR RESIDUE U H 417
16BC7SOFTWARELEU H:138 , U H:417 , HIS I:237 , ASN I:239 , ARG I:263 , ASP I:265 , ARG J:363 , U J:419BINDING SITE FOR RESIDUE U I 418
17BC8SOFTWARELEU I:238 , U I:418 , HOH I:425 , ASN J:339 , ARG J:363 , GLY J:364 , ASP J:365 , ARG K:463 , U K:476BINDING SITE FOR RESIDUE U J 419
18BC9SOFTWAREHOH J:255 , LEU J:338 , U J:419 , HIS K:437 , ASN K:439 , ARG K:463 , GLY K:464 , ASP K:465 , U L:421 , ARG L:563BINDING SITE FOR RESIDUE U K 476
19CC1SOFTWAREHOH K:220 , HIS K:437 , LEU K:438 , U K:476 , HIS L:537 , ASN L:539 , ARG L:563 , ASP L:565 , U M:422 , ARG M:663BINDING SITE FOR RESIDUE U L 421
20CC2SOFTWAREU L:421 , LEU L:538 , HOH M:32 , U M:423 , HIS M:637 , ASN M:639 , ARG M:663 , ASP M:665BINDING SITE FOR RESIDUE U M 422
21CC3SOFTWAREU H:417 , U M:422 , LYS M:622 , LEU M:638 , ASP M:665 , HIS N:737 , ASN N:739 , ARG N:763 , ASP N:765BINDING SITE FOR RESIDUE U M 423

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1M8V)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1M8V)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1M8V)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1M8V)

(-) Exons   (0, 0)

(no "Exon" information available for 1M8V)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:72
 aligned with RUXX_PYRAB | Q9V0Y8 from UniProtKB/Swiss-Prot  Length:75

    Alignment length:72
                                    11        21        31        41        51        61        71  
           RUXX_PYRAB     2 AERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKRYGKIVIRGDNVLAISPT  73
               SCOP domains d1m8va_ A: Archaeal homoheptameric Sm protein                            SCOP domains
               CATH domains 1m8vA00 A:102-173  [code=2.30.30.100, no name defined]                   CATH domains
               Pfam domains ------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhh...eeeeee....eeeeeeeee.....eeeeeeeeee..eeeeeeeeeee....eeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------ Transcript
                 1m8v A 102 AERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKRYGKIVIRGDNVLAISPT 173
                                   111       121       131       141       151       161       171  


Chain B from PDB  Type:PROTEIN  Length:71
 aligned with RUXX_PYRAB | Q9V0Y8 from UniProtKB/Swiss-Prot  Length:75

    Alignment length:71
                                    12        22        32        42        52        62        72 
           RUXX_PYRAB     3 ERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKRYGKIVIRGDNVLAISPT  73
               SCOP domains d1m8vb_ B: Archaeal homoheptameric Sm protein                           SCOP domains
               CATH domains 1m8vB00 B:203-273  [code=2.30.30.100, no name defined]                  CATH domains
               Pfam domains ----------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhh...eeeeee....eeeeeeeee.....eeeeeeeeee..eeeeeeeeeee....eeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------- Transcript
                 1m8v B 203 ERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKRYGKIVIRGDNVLAISPT 273
                                   212       222       232       242       252       262       272 


Chain C from PDB  Type:PROTEIN  Length:71
 aligned with RUXX_PYRAB | Q9V0Y8 from UniProtKB/Swiss-Prot  Length:75

    Alignment length:71
                                    12        22        32        42        52        62        72 
           RUXX_PYRAB     3 ERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKRYGKIVIRGDNVLAISPT  73
               SCOP domains d1m8vc_ C: Archaeal homoheptameric Sm protein                           SCOP domains
               CATH domains 1m8vC00 C:303-373  [code=2.30.30.100, no name defined]                  CATH domains
               Pfam domains ----------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhh..eeeeeee....eeeeeeeee.....eeeeeeeeee..eeeeeeeeeee....eeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------- Transcript
                 1m8v C 303 ERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKRYGKIVIRGDNVLAISPT 373
                                   312       322       332       342       352       362       372 


Chain D from PDB  Type:PROTEIN  Length:71
 aligned with RUXX_PYRAB | Q9V0Y8 from UniProtKB/Swiss-Prot  Length:75

    Alignment length:71
                                    12        22        32        42        52        62        72 
           RUXX_PYRAB     3 ERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKRYGKIVIRGDNVLAISPT  73
               SCOP domains d1m8vd_ D: Archaeal homoheptameric Sm protein                           SCOP domains
               CATH domains 1m8vD00 D:403-473  [code=2.30.30.100, no name defined]                  CATH domains
               Pfam domains ----------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhh...eeeeee....eeeeeeeee.....eeeeeeeeee..eeeeeeeeeee....eeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------- Transcript
                 1m8v D 403 ERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKRYGKIVIRGDNVLAISPT 473
                                   412       422       432       442       452       462       472 


Chain E from PDB  Type:PROTEIN  Length:71
 aligned with RUXX_PYRAB | Q9V0Y8 from UniProtKB/Swiss-Prot  Length:75

    Alignment length:71
                                    12        22        32        42        52        62        72 
           RUXX_PYRAB     3 ERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKRYGKIVIRGDNVLAISPT  73
               SCOP domains d1m8ve_ E: Archaeal homoheptameric Sm protein                           SCOP domains
               CATH domains 1m8vE00 E:503-573  [code=2.30.30.100, no name defined]                  CATH domains
               Pfam domains ----------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhh...eeeeee....eeeeeeeee.....eeeeeeeeee..eeeeeeeeeee....eeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------- Transcript
                 1m8v E 503 ERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKRYGKIVIRGDNVLAISPT 573
                                   512       522       532       542       552       562       572 


Chain F from PDB  Type:PROTEIN  Length:71
 aligned with RUXX_PYRAB | Q9V0Y8 from UniProtKB/Swiss-Prot  Length:75

    Alignment length:71
                                    12        22        32        42        52        62        72 
           RUXX_PYRAB     3 ERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKRYGKIVIRGDNVLAISPT  73
               SCOP domains d1m8vf_ F: Archaeal homoheptameric Sm protein                           SCOP domains
               CATH domains 1m8vF00 F:603-673  [code=2.30.30.100, no name defined]                  CATH domains
               Pfam domains ----------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhh...eeeeee....eeeeeeeee.....eeeeeeeee....eeeeeeeeee....eeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------- Transcript
                 1m8v F 603 ERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKRYGKIVIRGDNVLAISPT 673
                                   612       622       632       642       652       662       672 


Chain G from PDB  Type:PROTEIN  Length:71
 aligned with RUXX_PYRAB | Q9V0Y8 from UniProtKB/Swiss-Prot  Length:75

    Alignment length:71
                                    12        22        32        42        52        62        72 
           RUXX_PYRAB     3 ERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKRYGKIVIRGDNVLAISPT  73
               SCOP domains d1m8vg_ G: Archaeal homoheptameric Sm protein                           SCOP domains
               CATH domains 1m8vG00 G:703-773  [code=2.30.30.100, no name defined]                  CATH domains
               Pfam domains ----------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhh..eeeeeee....eeeeeeeee.....eeeeeeeeee..eeeeeeeeeee....eeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------- Transcript
                 1m8v G 703 ERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKRYGKIVIRGDNVLAISPT 773
                                   712       722       732       742       752       762       772 


Chain H from PDB  Type:PROTEIN  Length:71
 aligned with RUXX_PYRAB | Q9V0Y8 from UniProtKB/Swiss-Prot  Length:75

    Alignment length:71
                                    12        22        32        42        52        62        72 
           RUXX_PYRAB     3 ERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKRYGKIVIRGDNVLAISPT  73
               SCOP domains d1m8vh_ H: Archaeal homoheptameric Sm protein                           SCOP domains
               CATH domains 1m8vH00 H:103-173  [code=2.30.30.100, no name defined]                  CATH domains
               Pfam domains ----------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhh...eeeeee...eeeeeeeeee.....eeeeeeeeee..eeeeeeeeeee....eeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------- Transcript
                 1m8v H 103 ERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKRYGKIVIRGDNVLAISPT 173
                                   112       122       132       142       152       162       172 


Chain I from PDB  Type:PROTEIN  Length:71
 aligned with RUXX_PYRAB | Q9V0Y8 from UniProtKB/Swiss-Prot  Length:75

    Alignment length:71
                                    12        22        32        42        52        62        72 
           RUXX_PYRAB     3 ERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKRYGKIVIRGDNVLAISPT  73
               SCOP domains d1m8vi_ I: Archaeal homoheptameric Sm protein                           SCOP domains
               CATH domains 1m8vI00 I:203-273  [code=2.30.30.100, no name defined]                  CATH domains
               Pfam domains ----------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhh...eeeeee....eeeeeeeee.....eeeeeeeeee..eeeeeeeeeee....eeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------- Transcript
                 1m8v I 203 ERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKRYGKIVIRGDNVLAISPT 273
                                   212       222       232       242       252       262       272 


Chain J from PDB  Type:PROTEIN  Length:71
 aligned with RUXX_PYRAB | Q9V0Y8 from UniProtKB/Swiss-Prot  Length:75

    Alignment length:71
                                    12        22        32        42        52        62        72 
           RUXX_PYRAB     3 ERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKRYGKIVIRGDNVLAISPT  73
               SCOP domains d1m8vj_ J: Archaeal homoheptameric Sm protein                           SCOP domains
               CATH domains 1m8vJ00 J:303-373  [code=2.30.30.100, no name defined]                  CATH domains
               Pfam domains ----------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhh..eeeeeee....eeeeeeeee.....eeeeeeeeee..eeeeeeeeeee....eeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------- Transcript
                 1m8v J 303 ERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKRYGKIVIRGDNVLAISPT 373
                                   312       322       332       342       352       362       372 


Chain K from PDB  Type:PROTEIN  Length:71
 aligned with RUXX_PYRAB | Q9V0Y8 from UniProtKB/Swiss-Prot  Length:75

    Alignment length:71
                                    12        22        32        42        52        62        72 
           RUXX_PYRAB     3 ERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKRYGKIVIRGDNVLAISPT  73
               SCOP domains d1m8vk_ K: Archaeal homoheptameric Sm protein                           SCOP domains
               CATH domains 1m8vK00 K:403-473  [code=2.30.30.100, no name defined]                  CATH domains
               Pfam domains ----------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhh...eeeeeee....eeeeeeeee.....eeeeeeeeee..eeeeeeeeeee....eeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------- Transcript
                 1m8v K 403 ERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKRYGKIVIRGDNVLAISPT 473
                                   412       422       432       442       452       462       472 


Chain L from PDB  Type:PROTEIN  Length:71
 aligned with RUXX_PYRAB | Q9V0Y8 from UniProtKB/Swiss-Prot  Length:75

    Alignment length:71
                                    12        22        32        42        52        62        72 
           RUXX_PYRAB     3 ERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKRYGKIVIRGDNVLAISPT  73
               SCOP domains d1m8vl_ L: Archaeal homoheptameric Sm protein                           SCOP domains
               CATH domains 1m8vL00 L:503-573  [code=2.30.30.100, no name defined]                  CATH domains
               Pfam domains ----------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhh..eeeeee....eeeeeeeee.....eeeeeeeeee..eeeeeeeeeee....eeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------- Transcript
                 1m8v L 503 ERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKRYGKIVIRGDNVLAISPT 573
                                   512       522       532       542       552       562       572 


Chain M from PDB  Type:PROTEIN  Length:71
 aligned with RUXX_PYRAB | Q9V0Y8 from UniProtKB/Swiss-Prot  Length:75

    Alignment length:71
                                    12        22        32        42        52        62        72 
           RUXX_PYRAB     3 ERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKRYGKIVIRGDNVLAISPT  73
               SCOP domains d1m8vm_ M: Archaeal homoheptameric Sm protein                           SCOP domains
               CATH domains 1m8vM00 M:603-673  [code=2.30.30.100, no name defined]                  CATH domains
               Pfam domains ----------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhh..eeeeeee....eeeeeeeee.....eeeeeeeeee..eeeeeeeeeee....eeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------- Transcript
                 1m8v M 603 ERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKRYGKIVIRGDNVLAISPT 673
                                   612       622       632       642       652       662       672 


Chain N from PDB  Type:PROTEIN  Length:71
 aligned with RUXX_PYRAB | Q9V0Y8 from UniProtKB/Swiss-Prot  Length:75

    Alignment length:71
                                    12        22        32        42        52        62        72 
           RUXX_PYRAB     3 ERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKRYGKIVIRGDNVLAISPT  73
               SCOP domains d1m8vn_ N: Archaeal homoheptameric Sm protein                           SCOP domains
               CATH domains 1m8vN00 N:703-773  [code=2.30.30.100, no name defined]                  CATH domains
           Pfam domains (1) ----LSM-1m8vN01 N:707-772                                             - Pfam domains (1)
           Pfam domains (2) ----LSM-1m8vN02 N:707-772                                             - Pfam domains (2)
           Pfam domains (3) ----LSM-1m8vN03 N:707-772                                             - Pfam domains (3)
           Pfam domains (4) ----LSM-1m8vN04 N:707-772                                             - Pfam domains (4)
           Pfam domains (5) ----LSM-1m8vN05 N:707-772                                             - Pfam domains (5)
           Pfam domains (6) ----LSM-1m8vN06 N:707-772                                             - Pfam domains (6)
           Pfam domains (7) ----LSM-1m8vN07 N:707-772                                             - Pfam domains (7)
           Pfam domains (8) ----LSM-1m8vN08 N:707-772                                             - Pfam domains (8)
           Pfam domains (9) ----LSM-1m8vN09 N:707-772                                             - Pfam domains (9)
          Pfam domains (10) ----LSM-1m8vN10 N:707-772                                             - Pfam domains (10)
          Pfam domains (11) ----LSM-1m8vN11 N:707-772                                             - Pfam domains (11)
          Pfam domains (12) ----LSM-1m8vN12 N:707-772                                             - Pfam domains (12)
          Pfam domains (13) ----LSM-1m8vN13 N:707-772                                             - Pfam domains (13)
          Pfam domains (14) ----LSM-1m8vN14 N:707-772                                             - Pfam domains (14)
         Sec.struct. author .hhhhhhhh....eeeeee....eeeeeeeee.....eeeeeeeee....eeeeeeeeee....eeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------- Transcript
                 1m8v N 703 ERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKRYGKIVIRGDNVLAISPT 773
                                   712       722       732       742       752       762       772 


Chain O from PDB  Type:RNA  Length:6
                                      
                 1m8v O   1 UUUUUU   6


Chain P from PDB  Type:RNA  Length:6
                                      
                 1m8v P   1 UUUUUU   6


Chain Q from PDB  Type:RNA  Length:6
                                      
                 1m8v Q   1 UUUUUU   6


Chain R from PDB  Type:RNA  Length:6
                                      
                 1m8v R   1 UUUUUU   6


Chain S from PDB  Type:RNA  Length:6
                                      
                 1m8v S   1 UUUUUU   6


Chain T from PDB  Type:RNA  Length:5
                                     
                 1m8v T   1 UUUUU   5


Chain U from PDB  Type:RNA  Length:6
                                      
                 1m8v U   1 UUUUUU   6
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 14)

Asymmetric/Biological Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (1, 14)

Asymmetric/Biological Unit
(-)
Class: Mainly Beta (13760)
(-)
Architecture: Roll (1513)
(-)
Topology: SH3 type barrels. (648)
(-)
Homologous Superfamily: [code=2.30.30.100, no name defined] (40)
(-)
[unclassified] (3)
1a1m8vB00B:203-273
1b1m8vF00F:603-673
1c1m8vG00G:703-773
1d1m8vH00H:103-173
1e1m8vI00I:203-273
1f1m8vJ00J:303-373
1g1m8vK00K:403-473
1h1m8vL00L:503-573
1i1m8vM00M:603-673
1j1m8vN00N:703-773
1k1m8vA00A:102-173
1l1m8vC00C:303-373
1m1m8vD00D:403-473
1n1m8vE00E:503-573

(-) Pfam Domains  (1, 14)

Asymmetric/Biological Unit
(-)
Clan: Sm-like (17)
(-)
Family: LSM (13)
(-)
Pyrococcus abyssi (strain GE5 / Orsay) (1)
1aLSM-1m8vN01N:707-772
1bLSM-1m8vN02N:707-772
1cLSM-1m8vN03N:707-772
1dLSM-1m8vN04N:707-772
1eLSM-1m8vN05N:707-772
1fLSM-1m8vN06N:707-772
1gLSM-1m8vN07N:707-772
1hLSM-1m8vN08N:707-772
1iLSM-1m8vN09N:707-772
1jLSM-1m8vN10N:707-772
1kLSM-1m8vN11N:707-772
1lLSM-1m8vN12N:707-772
1mLSM-1m8vN13N:707-772
1nLSM-1m8vN14N:707-772

(-) Gene Ontology  (1, 1)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H,I,J,K,L,M,N   (RUXX_PYRAB | Q9V0Y8)
cellular component
    GO:0030529    intracellular ribonucleoprotein complex    An intracellular macromolecular complex containing both protein and RNA molecules.

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  1m8v
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  RUXX_PYRAB | Q9V0Y8
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        RUXX_PYRAB | Q9V0Y8: 1h64

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 1M8V)