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(-) Description

Title :  CRYSTAL STRUCTURE OF THE SM-RELATED PROTEIN OF P. ABYSSI THE BIOLOGICAL UNIT IS A HEPTAMER
 
Authors :  C. Mayer, S. Weeks, D. Suck
Date :  05 Jun 01  (Deposition) - 19 Dec 02  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,1,2
Biol. Unit 1:  A,B,C,D,E,F,G  (1x)
Biol. Unit 2:  H,I,J,K,L,M,N  (1x)
Biol. Unit 3:  O,P,Q,R,S,T,U  (1x)
Biol. Unit 4:  V,W,X,Y,Z,1,2  (1x)
Keywords :  Sm-Like Protein, Sm Fold, Spliceosome, Snrnp Core (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Thore, C. Mayer, C. Sauter, S. Weeks, D. Suck
Crystal Structures Of The Pyrococcus Abyssi Sm Core And Its Complex With Rna. Common Features Of Rna Binding In Archaea And Eukarya
J. Biol. Chem. V. 278 1239 2003
PubMed-ID: 12409299  |  Reference-DOI: 10.1074/JBC.M207685200

(-) Compounds

Molecule 1 - SNRNP SM-LIKE PROTEIN
    Chains: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, 1, 2
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET24D
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Organism Scientific: PYROCOCCUS ABYSSI
    Organism Taxid: 29292
    Other Details: GENOMIC DNA

 Structural Features

(-) Chains, Units

  12345678910111213141516171819202122232425262728
Asymmetric Unit : ABCDEFGHIJKLMNOPQRSTUVWXYZ12
Biological Unit 1 (1x): ABCDEFG                     
Biological Unit 2 (1x):        HIJKLMN              
Biological Unit 3 (1x):               OPQRSTU       
Biological Unit 4 (1x):                      VWXYZ12

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1H64)

(-) Sites  (0, 0)

(no "Site" information available for 1H64)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1H64)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1H64)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1H64)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1H64)

(-) Exons   (0, 0)

(no "Exon" information available for 1H64)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain 1 from PDB  Type:PROTEIN  Length:71
 aligned with RUXX_PYRAB | Q9V0Y8 from UniProtKB/Swiss-Prot  Length:75

    Alignment length:71
                                    12        22        32        42        52        62        72 
            RUXX_PYRAB    3 ERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKRYGKIVIRGDNVLAISPT 73
               SCOP domains d1h641_ 1: Archaeal homoheptameric Sm protein                           SCOP domains
               CATH domains 1h64100 1:3-73  [code=2.30.30.100, no name defined]                     CATH domains
               Pfam domains ----------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhh....eeeeee...eeeeeeeeee.....eeeeeeeeee..eeeeeeeeeee....eeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------- Transcript
                  1h64 1  3 ERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKRYGKIVIRGDNVLAISPT 73
                                    12        22        32        42        52        62        72 


Chain 2 from PDB  Type:PROTEIN  Length:71
 aligned with RUXX_PYRAB | Q9V0Y8 from UniProtKB/Swiss-Prot  Length:75

    Alignment length:71
                                    12        22        32        42        52        62        72 
            RUXX_PYRAB    3 ERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKRYGKIVIRGDNVLAISPT 73
               SCOP domains d1h642_ 2: Archaeal homoheptameric Sm protein                           SCOP domains
               CATH domains 1h64200 2:3-73  [code=2.30.30.100, no name defined]                     CATH domains
               Pfam domains ----------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhh...eeeeee....eeeeeeeee.....eeeeeeeeee..eeeeeeeeeee....eeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------- Transcript
                  1h64 2  3 ERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKRYGKIVIRGDNVLAISPT 73
                                    12        22        32        42        52        62        72 


Chain A from PDB  Type:PROTEIN  Length:71
 aligned with RUXX_PYRAB | Q9V0Y8 from UniProtKB/Swiss-Prot  Length:75

    Alignment length:71
                                    12        22        32        42        52        62        72 
            RUXX_PYRAB    3 ERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKRYGKIVIRGDNVLAISPT 73
               SCOP domains d1h64a_ A: Archaeal homoheptameric Sm protein                           SCOP domains
               CATH domains 1h64A00 A:3-73  [code=2.30.30.100, no name defined]                     CATH domains
               Pfam domains ----------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhh...eeeeee...eeeeeeeeee.....eeeeeeeeee..eeeeeeeeeee....eeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------- Transcript
                  1h64 A  3 ERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKRYGKIVIRGDNVLAISPT 73
                                    12        22        32        42        52        62        72 


Chain B from PDB  Type:PROTEIN  Length:71
 aligned with RUXX_PYRAB | Q9V0Y8 from UniProtKB/Swiss-Prot  Length:75

    Alignment length:71
                                    12        22        32        42        52        62        72 
            RUXX_PYRAB    3 ERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKRYGKIVIRGDNVLAISPT 73
               SCOP domains d1h64b_ B: Archaeal homoheptameric Sm protein                           SCOP domains
               CATH domains 1h64B00 B:3-73  [code=2.30.30.100, no name defined]                     CATH domains
               Pfam domains ----------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhh...eeeeee...eeeeeeeeee.....eeeeeeeeee..eeeeeeeeeee....eeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------- Transcript
                  1h64 B  3 ERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKRYGKIVIRGDNVLAISPT 73
                                    12        22        32        42        52        62        72 


Chain C from PDB  Type:PROTEIN  Length:71
 aligned with RUXX_PYRAB | Q9V0Y8 from UniProtKB/Swiss-Prot  Length:75

    Alignment length:71
                                    12        22        32        42        52        62        72 
            RUXX_PYRAB    3 ERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKRYGKIVIRGDNVLAISPT 73
               SCOP domains d1h64c_ C: Archaeal homoheptameric Sm protein                           SCOP domains
               CATH domains 1h64C00 C:3-73  [code=2.30.30.100, no name defined]                     CATH domains
               Pfam domains ----------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhh...eeeeee...eeeeeeeeee.....eeeeeeeeee..eeeeeeeeeee....eeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------- Transcript
                  1h64 C  3 ERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKRYGKIVIRGDNVLAISPT 73
                                    12        22        32        42        52        62        72 


Chain D from PDB  Type:PROTEIN  Length:71
 aligned with RUXX_PYRAB | Q9V0Y8 from UniProtKB/Swiss-Prot  Length:75

    Alignment length:71
                                    12        22        32        42        52        62        72 
            RUXX_PYRAB    3 ERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKRYGKIVIRGDNVLAISPT 73
               SCOP domains d1h64d_ D: Archaeal homoheptameric Sm protein                           SCOP domains
               CATH domains 1h64D00 D:3-73  [code=2.30.30.100, no name defined]                     CATH domains
               Pfam domains ----------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhh...eeeeee...eeeeeeeeee.....eeeeeeeeee..eeeeeeeeeee....eeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------- Transcript
                  1h64 D  3 ERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKRYGKIVIRGDNVLAISPT 73
                                    12        22        32        42        52        62        72 


Chain E from PDB  Type:PROTEIN  Length:71
 aligned with RUXX_PYRAB | Q9V0Y8 from UniProtKB/Swiss-Prot  Length:75

    Alignment length:71
                                    12        22        32        42        52        62        72 
            RUXX_PYRAB    3 ERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKRYGKIVIRGDNVLAISPT 73
               SCOP domains d1h64e_ E: Archaeal homoheptameric Sm protein                           SCOP domains
               CATH domains 1h64E00 E:3-73  [code=2.30.30.100, no name defined]                     CATH domains
               Pfam domains ----------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhh...eeeeee...eeeeeeeeee.....eeeeeeeeee..eeeeeeeeeee....eeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------- Transcript
                  1h64 E  3 ERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKRYGKIVIRGDNVLAISPT 73
                                    12        22        32        42        52        62        72 


Chain F from PDB  Type:PROTEIN  Length:71
 aligned with RUXX_PYRAB | Q9V0Y8 from UniProtKB/Swiss-Prot  Length:75

    Alignment length:71
                                    12        22        32        42        52        62        72 
            RUXX_PYRAB    3 ERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKRYGKIVIRGDNVLAISPT 73
               SCOP domains d1h64f_ F: Archaeal homoheptameric Sm protein                           SCOP domains
               CATH domains 1h64F00 F:3-73  [code=2.30.30.100, no name defined]                     CATH domains
               Pfam domains ----------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhh...eeeeee....eeeeeeeee.....eeeeeeeeee..eeeeeeeeeee....eeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------- Transcript
                  1h64 F  3 ERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKRYGKIVIRGDNVLAISPT 73
                                    12        22        32        42        52        62        72 


Chain G from PDB  Type:PROTEIN  Length:71
 aligned with RUXX_PYRAB | Q9V0Y8 from UniProtKB/Swiss-Prot  Length:75

    Alignment length:71
                                    12        22        32        42        52        62        72 
            RUXX_PYRAB    3 ERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKRYGKIVIRGDNVLAISPT 73
               SCOP domains d1h64g_ G: Archaeal homoheptameric Sm protein                           SCOP domains
               CATH domains 1h64G00 G:3-73  [code=2.30.30.100, no name defined]                     CATH domains
               Pfam domains ----------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhh....eeeeee....eeeeeeeee.....eeeeeeeeee..eeeeeeeeeee....eeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------- Transcript
                  1h64 G  3 ERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKRYGKIVIRGDNVLAISPT 73
                                    12        22        32        42        52        62        72 


Chain H from PDB  Type:PROTEIN  Length:71
 aligned with RUXX_PYRAB | Q9V0Y8 from UniProtKB/Swiss-Prot  Length:75

    Alignment length:71
                                    12        22        32        42        52        62        72 
            RUXX_PYRAB    3 ERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKRYGKIVIRGDNVLAISPT 73
               SCOP domains d1h64h_ H: Archaeal homoheptameric Sm protein                           SCOP domains
               CATH domains 1h64H00 H:3-73  [code=2.30.30.100, no name defined]                     CATH domains
               Pfam domains ----------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhh....eeeeee...eeeeeeeeee.....eeeeeeeeee...eeeeeeeeee....eeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------- Transcript
                  1h64 H  3 ERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKRYGKIVIRGDNVLAISPT 73
                                    12        22        32        42        52        62        72 


Chain I from PDB  Type:PROTEIN  Length:71
 aligned with RUXX_PYRAB | Q9V0Y8 from UniProtKB/Swiss-Prot  Length:75

    Alignment length:71
                                    12        22        32        42        52        62        72 
            RUXX_PYRAB    3 ERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKRYGKIVIRGDNVLAISPT 73
               SCOP domains d1h64i_ I: Archaeal homoheptameric Sm protein                           SCOP domains
               CATH domains 1h64I00 I:3-73  [code=2.30.30.100, no name defined]                     CATH domains
               Pfam domains ----------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhh...eeeeee...eeeeeeeeee.....eeeeeeeeee...eeeeeeeeee....eeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------- Transcript
                  1h64 I  3 ERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKRYGKIVIRGDNVLAISPT 73
                                    12        22        32        42        52        62        72 


Chain J from PDB  Type:PROTEIN  Length:71
 aligned with RUXX_PYRAB | Q9V0Y8 from UniProtKB/Swiss-Prot  Length:75

    Alignment length:71
                                    12        22        32        42        52        62        72 
            RUXX_PYRAB    3 ERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKRYGKIVIRGDNVLAISPT 73
               SCOP domains d1h64j_ J: Archaeal homoheptameric Sm protein                           SCOP domains
               CATH domains 1h64J00 J:3-73  [code=2.30.30.100, no name defined]                     CATH domains
               Pfam domains ----------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhh...eeeeee....eeeeeeeee.....eeeeeeeeee..eeeeeeeeeee....eeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------- Transcript
                  1h64 J  3 ERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKRYGKIVIRGDNVLAISPT 73
                                    12        22        32        42        52        62        72 


Chain K from PDB  Type:PROTEIN  Length:71
 aligned with RUXX_PYRAB | Q9V0Y8 from UniProtKB/Swiss-Prot  Length:75

    Alignment length:71
                                    12        22        32        42        52        62        72 
            RUXX_PYRAB    3 ERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKRYGKIVIRGDNVLAISPT 73
               SCOP domains d1h64k_ K: Archaeal homoheptameric Sm protein                           SCOP domains
               CATH domains 1h64K00 K:3-73  [code=2.30.30.100, no name defined]                     CATH domains
               Pfam domains ----------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhh...eeeee....eeeeeeeeee.....eeeeeeeeee..eeeeeeeeeee......eeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------- Transcript
                  1h64 K  3 ERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKRYGKIVIRGDNVLAISPT 73
                                    12        22        32        42        52        62        72 


Chain L from PDB  Type:PROTEIN  Length:71
 aligned with RUXX_PYRAB | Q9V0Y8 from UniProtKB/Swiss-Prot  Length:75

    Alignment length:71
                                    12        22        32        42        52        62        72 
            RUXX_PYRAB    3 ERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKRYGKIVIRGDNVLAISPT 73
               SCOP domains d1h64l_ L: Archaeal homoheptameric Sm protein                           SCOP domains
               CATH domains 1h64L00 L:3-73  [code=2.30.30.100, no name defined]                     CATH domains
               Pfam domains ----------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhh...eeeeee...eeeeeeeeee.....eeeeeeeeee..eeeeeeeeeee....eeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------- Transcript
                  1h64 L  3 ERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKRYGKIVIRGDNVLAISPT 73
                                    12        22        32        42        52        62        72 


Chain M from PDB  Type:PROTEIN  Length:71
 aligned with RUXX_PYRAB | Q9V0Y8 from UniProtKB/Swiss-Prot  Length:75

    Alignment length:71
                                    12        22        32        42        52        62        72 
            RUXX_PYRAB    3 ERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKRYGKIVIRGDNVLAISPT 73
               SCOP domains d1h64m_ M: Archaeal homoheptameric Sm protein                           SCOP domains
               CATH domains 1h64M00 M:3-73  [code=2.30.30.100, no name defined]                     CATH domains
               Pfam domains ----------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhh...eeeeee...eeeeeeeeee.....eeeeeeeeee..eeeeeeeeeee....eeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------- Transcript
                  1h64 M  3 ERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKRYGKIVIRGDNVLAISPT 73
                                    12        22        32        42        52        62        72 


Chain N from PDB  Type:PROTEIN  Length:71
 aligned with RUXX_PYRAB | Q9V0Y8 from UniProtKB/Swiss-Prot  Length:75

    Alignment length:71
                                    12        22        32        42        52        62        72 
            RUXX_PYRAB    3 ERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKRYGKIVIRGDNVLAISPT 73
               SCOP domains d1h64n_ N: Archaeal homoheptameric Sm protein                           SCOP domains
               CATH domains 1h64N00 N:3-73  [code=2.30.30.100, no name defined]                     CATH domains
               Pfam domains ----------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhh...eeeeee....eeeeeeeee.....eeeeeeeee....eeeeeeeeee....eeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------- Transcript
                  1h64 N  3 ERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKRYGKIVIRGDNVLAISPT 73
                                    12        22        32        42        52        62        72 


Chain O from PDB  Type:PROTEIN  Length:71
 aligned with RUXX_PYRAB | Q9V0Y8 from UniProtKB/Swiss-Prot  Length:75

    Alignment length:71
                                    12        22        32        42        52        62        72 
            RUXX_PYRAB    3 ERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKRYGKIVIRGDNVLAISPT 73
               SCOP domains d1h64o_ O: Archaeal homoheptameric Sm protein                           SCOP domains
               CATH domains 1h64O00 O:3-73  [code=2.30.30.100, no name defined]                     CATH domains
               Pfam domains ----------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhh...eeeeee...eeeeeeeeee.....eeeeeeeeee..eeeeeeeeeee....eeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------- Transcript
                  1h64 O  3 ERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKRYGKIVIRGDNVLAISPT 73
                                    12        22        32        42        52        62        72 


Chain P from PDB  Type:PROTEIN  Length:71
 aligned with RUXX_PYRAB | Q9V0Y8 from UniProtKB/Swiss-Prot  Length:75

    Alignment length:71
                                    12        22        32        42        52        62        72 
            RUXX_PYRAB    3 ERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKRYGKIVIRGDNVLAISPT 73
               SCOP domains d1h64p_ P: Archaeal homoheptameric Sm protein                           SCOP domains
               CATH domains 1h64P00 P:3-73  [code=2.30.30.100, no name defined]                     CATH domains
               Pfam domains ----------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhh...eeeee....eeeeeeeeee.....eeeeeeeeee..eeeeeeeeeee......eeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------- Transcript
                  1h64 P  3 ERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKRYGKIVIRGDNVLAISPT 73
                                    12        22        32        42        52        62        72 


Chain Q from PDB  Type:PROTEIN  Length:71
 aligned with RUXX_PYRAB | Q9V0Y8 from UniProtKB/Swiss-Prot  Length:75

    Alignment length:71
                                    12        22        32        42        52        62        72 
            RUXX_PYRAB    3 ERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKRYGKIVIRGDNVLAISPT 73
               SCOP domains d1h64q_ Q: Archaeal homoheptameric Sm protein                           SCOP domains
               CATH domains 1h64Q00 Q:3-73  [code=2.30.30.100, no name defined]                     CATH domains
               Pfam domains ----------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhh...eeeeee...eeeeeeeeee.....eeeeeeeeee..eeeeeeeeeee....eeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------- Transcript
                  1h64 Q  3 ERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKRYGKIVIRGDNVLAISPT 73
                                    12        22        32        42        52        62        72 


Chain R from PDB  Type:PROTEIN  Length:71
 aligned with RUXX_PYRAB | Q9V0Y8 from UniProtKB/Swiss-Prot  Length:75

    Alignment length:71
                                    12        22        32        42        52        62        72 
            RUXX_PYRAB    3 ERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKRYGKIVIRGDNVLAISPT 73
               SCOP domains d1h64r_ R: Archaeal homoheptameric Sm protein                           SCOP domains
               CATH domains 1h64R00 R:3-73  [code=2.30.30.100, no name defined]                     CATH domains
               Pfam domains ----------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhh....eeeeee...eeeeeeeeee.....eeeeeeeeee..eeeeeeeeeee....eeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------- Transcript
                  1h64 R  3 ERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKRYGKIVIRGDNVLAISPT 73
                                    12        22        32        42        52        62        72 


Chain S from PDB  Type:PROTEIN  Length:71
 aligned with RUXX_PYRAB | Q9V0Y8 from UniProtKB/Swiss-Prot  Length:75

    Alignment length:71
                                    12        22        32        42        52        62        72 
            RUXX_PYRAB    3 ERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKRYGKIVIRGDNVLAISPT 73
               SCOP domains d1h64s_ S: Archaeal homoheptameric Sm protein                           SCOP domains
               CATH domains 1h64S00 S:3-73  [code=2.30.30.100, no name defined]                     CATH domains
               Pfam domains ----------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhh....eeeeee...eeeeeeeeee.....eeeeeeeeee..eeeeeeeeeee....eeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------- Transcript
                  1h64 S  3 ERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKRYGKIVIRGDNVLAISPT 73
                                    12        22        32        42        52        62        72 


Chain T from PDB  Type:PROTEIN  Length:71
 aligned with RUXX_PYRAB | Q9V0Y8 from UniProtKB/Swiss-Prot  Length:75

    Alignment length:71
                                    12        22        32        42        52        62        72 
            RUXX_PYRAB    3 ERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKRYGKIVIRGDNVLAISPT 73
               SCOP domains d1h64t_ T: Archaeal homoheptameric Sm protein                           SCOP domains
               CATH domains 1h64T00 T:3-73  [code=2.30.30.100, no name defined]                     CATH domains
               Pfam domains ----------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhh...eeeeee...eeeeeeeeee.....eeeeeeeeee...eeeeeeeeee....eeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------- Transcript
                  1h64 T  3 ERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKRYGKIVIRGDNVLAISPT 73
                                    12        22        32        42        52        62        72 


Chain U from PDB  Type:PROTEIN  Length:71
 aligned with RUXX_PYRAB | Q9V0Y8 from UniProtKB/Swiss-Prot  Length:75

    Alignment length:71
                                    12        22        32        42        52        62        72 
            RUXX_PYRAB    3 ERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKRYGKIVIRGDNVLAISPT 73
               SCOP domains d1h64u_ U: Archaeal homoheptameric Sm protein                           SCOP domains
               CATH domains 1h64U00 U:3-73  [code=2.30.30.100, no name defined]                     CATH domains
               Pfam domains ----------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhh...eeeeee....eeeeeeeee.....eeeeeeeeee..eeeeeeeeeee....eeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------- Transcript
                  1h64 U  3 ERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKRYGKIVIRGDNVLAISPT 73
                                    12        22        32        42        52        62        72 


Chain V from PDB  Type:PROTEIN  Length:71
 aligned with RUXX_PYRAB | Q9V0Y8 from UniProtKB/Swiss-Prot  Length:75

    Alignment length:71
                                    12        22        32        42        52        62        72 
            RUXX_PYRAB    3 ERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKRYGKIVIRGDNVLAISPT 73
               SCOP domains d1h64v_ V: Archaeal homoheptameric Sm protein                           SCOP domains
               CATH domains 1h64V00 V:3-73  [code=2.30.30.100, no name defined]                     CATH domains
               Pfam domains ----------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhh...eeeeee...eeeeeeeeee.....eeeeeeeeee..eeeeeeeeeee....eeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------- Transcript
                  1h64 V  3 ERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKRYGKIVIRGDNVLAISPT 73
                                    12        22        32        42        52        62        72 


Chain W from PDB  Type:PROTEIN  Length:71
 aligned with RUXX_PYRAB | Q9V0Y8 from UniProtKB/Swiss-Prot  Length:75

    Alignment length:71
                                    12        22        32        42        52        62        72 
            RUXX_PYRAB    3 ERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKRYGKIVIRGDNVLAISPT 73
               SCOP domains d1h64w_ W: Archaeal homoheptameric Sm protein                           SCOP domains
               CATH domains 1h64W00 W:3-73  [code=2.30.30.100, no name defined]                     CATH domains
               Pfam domains ----------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhh...eeeeee....eeeeeeeee.....eeeeeeeee....eeeeeeeeee....eeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------- Transcript
                  1h64 W  3 ERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKRYGKIVIRGDNVLAISPT 73
                                    12        22        32        42        52        62        72 


Chain X from PDB  Type:PROTEIN  Length:71
 aligned with RUXX_PYRAB | Q9V0Y8 from UniProtKB/Swiss-Prot  Length:75

    Alignment length:71
                                    12        22        32        42        52        62        72 
            RUXX_PYRAB    3 ERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKRYGKIVIRGDNVLAISPT 73
               SCOP domains d1h64x_ X: Archaeal homoheptameric Sm protein                           SCOP domains
               CATH domains 1h64X00 X:3-73  [code=2.30.30.100, no name defined]                     CATH domains
               Pfam domains ----------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhh..eeeeeee...eeeeeeeeee.....eeeeeeeeee..eeeeeeeeeee....eeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------- Transcript
                  1h64 X  3 ERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKRYGKIVIRGDNVLAISPT 73
                                    12        22        32        42        52        62        72 


Chain Y from PDB  Type:PROTEIN  Length:71
 aligned with RUXX_PYRAB | Q9V0Y8 from UniProtKB/Swiss-Prot  Length:75

    Alignment length:71
                                    12        22        32        42        52        62        72 
            RUXX_PYRAB    3 ERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKRYGKIVIRGDNVLAISPT 73
               SCOP domains d1h64y_ Y: Archaeal homoheptameric Sm protein                           SCOP domains
               CATH domains 1h64Y00 Y:3-73  [code=2.30.30.100, no name defined]                     CATH domains
               Pfam domains ----------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhh...eeeeee...eeeeeeeeee.....eeeeeeeeee..eeeeeeeeeee....eeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------- Transcript
                  1h64 Y  3 ERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKRYGKIVIRGDNVLAISPT 73
                                    12        22        32        42        52        62        72 


Chain Z from PDB  Type:PROTEIN  Length:71
 aligned with RUXX_PYRAB | Q9V0Y8 from UniProtKB/Swiss-Prot  Length:75

    Alignment length:71
                                    12        22        32        42        52        62        72 
            RUXX_PYRAB    3 ERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKRYGKIVIRGDNVLAISPT 73
               SCOP domains d1h64z_ Z: Archaeal homoheptameric Sm protein                           SCOP domains
               CATH domains 1h64Z00 Z:3-73  [code=2.30.30.100, no name defined]                     CATH domains
               Pfam domains ----------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhh...eeeee....eeeeeeeeee.....eeeeeeeeee..eeeeeeeeeee......eeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------- Transcript
                  1h64 Z  3 ERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKRYGKIVIRGDNVLAISPT 73
                                    12        22        32        42        52        62        72
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 28)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (1, 28)

Asymmetric Unit
(-)
Class: Mainly Beta (13760)
(-)
Architecture: Roll (1513)
(-)
Topology: SH3 type barrels. (648)
(-)
Homologous Superfamily: [code=2.30.30.100, no name defined] (40)
(-)
Pyrococcus abyssi. Organism_taxid: 29292. (1)
1a1h641001:3-73
1b1h642002:3-73
1c1h64I00I:3-73
1d1h64J00J:3-73
1e1h64K00K:3-73
1f1h64L00L:3-73
1g1h64M00M:3-73
1h1h64N00N:3-73
1i1h64O00O:3-73
1j1h64P00P:3-73
1k1h64Q00Q:3-73
1l1h64R00R:3-73
1m1h64A00A:3-73
1n1h64S00S:3-73
1o1h64T00T:3-73
1p1h64U00U:3-73
1q1h64V00V:3-73
1r1h64W00W:3-73
1s1h64X00X:3-73
1t1h64Y00Y:3-73
1u1h64Z00Z:3-73
1v1h64B00B:3-73
1w1h64C00C:3-73
1x1h64D00D:3-73
1y1h64E00E:3-73
1z1h64F00F:3-73
1aa1h64G00G:3-73
1ab1h64H00H:3-73

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1H64)

(-) Gene Ontology  (1, 1)

Asymmetric Unit(hide GO term definitions)
Chain 1,2,A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z   (RUXX_PYRAB | Q9V0Y8)
cellular component
    GO:0030529    intracellular ribonucleoprotein complex    An intracellular macromolecular complex containing both protein and RNA molecules.

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  1h64
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  RUXX_PYRAB | Q9V0Y8
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        RUXX_PYRAB | Q9V0Y8: 1m8v

(-) Related Entries Specified in the PDB File

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