Chain A from PDB Type:PROTEIN Length:399
aligned with FLP_YEAST | P03870 from UniProtKB/Swiss-Prot Length:423
Alignment length:421
11 21 31 41 51 61 71 81 91 101 111 121 131 141 151 161 171 181 191 201 211 221 231 241 251 261 271 281 291 301 311 321 331 341 351 361 371 381 391 401 411 421
FLP_YEAST 2 PQFGILCKTPPKVLVRQFVERFERPSGEKIALCAAELTYLCWMITHNGTAIKRATFMSYNTIISNSLSFDIVNKSLQFKYKTQKATILEASLKKLIPAWEFTIIPYYGQKHQSDITDIVSSLQLQFESSEEADKGNSHSKKMLKALLSEGESIWEITEKILNSFEYTSRFTKTKTLYQFLFLATFINCGRFSDIKNVDPKSFKLVQNKYLGVIIQCLVTETKTSVSRHIYFFSARGRIDPLVYLDEFLRNSEPVLKRVNRTGNSSSNKQEYQLLKDNLVRSYNKALKKNAPYSIFAIKNGPKSHIGRHLMTSFLSMKGLTELTNVVGNWSDKRASAVARTTYTHQITAIPDHYFALVSRYYAYDPISKEMIALKDETNPIEEWQHIEQLKGSAEGSIRYPAWNGIISQEVLDYLSSYINRR 422
SCOP domains d1m6xa1 A:2-129 Flp recombinase d1m6xa2 A:136-422 Flp recombinase SCOP domains
CATH domains -1m6xA01 A:3-107 FLP Recombinase, lambda integrase-like, N-terminal domain (domain 1) -- ---------------- -1m6xA02 A:137-419 Intergrase catalytic core --- CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author hhhhhhhhhhhhhhhhhhhhh....hhhhhh.hhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhheee....eeeeee...hhhhhhhhhhhhh...eeeeee...----.hhhhhhhhhhhhh..------hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh.hhhhhhheeeeeeeeeee...eeeeeeee........eeeee.......hhhhhhhhhhh....ee...............ee....hhhhhhhhhhhhhh.hhhhhh......hhhhhhhhhhhhhh.hhhhhhhhhh....------------.....hhhhhhhhh..eee......eee.....hhhhhhhhhhhh....hhhhhh.......hhhhhhhhhhhhhhh Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1m6x A 2 SQFDILCKTPPKVLVRQFVERFERPSGEKIASCAAELTYLCWMITHNGTAIKRATFMSYNTIISNSLSFDIVNKSLQFKYKTQKATILEASLKKLIPAWEFTIIPYNG----SDITDIVSSLQLQFES------GNSHSKKMLKALLSEGESIWEITEKILNSFEYTSRFTKTKTLYQFLFLATFINCGRFSDIKNVDPKSFKLVQNKYLGVIIQCLVTETKTSVSRHIYFFSARGRIDPLVYLDEFLRNSEPVLKRVNRTGNSSSNKQEYQLLKDNLVRSYNKALKKNAPYPIFAIKNGPKSHIGRHLMTSFLSMKGLTELTNVVGNWSDK------------QITAIPDHYFALVSRYYAYDPISKEMIALKDETNPIEEWQHIEQLKGSAEGSIRYPAWNGIISQEVLDYLSSYINRR 422
11 21 31 41 51 61 71 81 91 101 | - | 121 | - | 141 151 161 171 181 191 201 211 221 231 241 251 261 271 281 291 301 311 321 331 | - | 351 361 371 381 391 401 411 421
109 114 129 136 333 346
Chain B from PDB Type:PROTEIN Length:401
aligned with FLP_YEAST | P03870 from UniProtKB/Swiss-Prot Length:423
Alignment length:421
11 21 31 41 51 61 71 81 91 101 111 121 131 141 151 161 171 181 191 201 211 221 231 241 251 261 271 281 291 301 311 321 331 341 351 361 371 381 391 401 411 421
FLP_YEAST 2 PQFGILCKTPPKVLVRQFVERFERPSGEKIALCAAELTYLCWMITHNGTAIKRATFMSYNTIISNSLSFDIVNKSLQFKYKTQKATILEASLKKLIPAWEFTIIPYYGQKHQSDITDIVSSLQLQFESSEEADKGNSHSKKMLKALLSEGESIWEITEKILNSFEYTSRFTKTKTLYQFLFLATFINCGRFSDIKNVDPKSFKLVQNKYLGVIIQCLVTETKTSVSRHIYFFSARGRIDPLVYLDEFLRNSEPVLKRVNRTGNSSSNKQEYQLLKDNLVRSYNKALKKNAPYSIFAIKNGPKSHIGRHLMTSFLSMKGLTELTNVVGNWSDKRASAVARTTYTHQITAIPDHYFALVSRYYAYDPISKEMIALKDETNPIEEWQHIEQLKGSAEGSIRYPAWNGIISQEVLDYLSSYINRR 422
SCOP domains d1m6xb1 B:2-129 Flp recombinase d1m6xb2 B:136-422 Flp recombinase SCOP domains
CATH domains -1m6xB01 B:3-107 FLP Recombinase, lambda integrase-like, N-terminal domain (domain 1) -- ---------------- -1m6xB02 B:137-419 Intergrase catalytic core --- CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author hhhhhhhhhhhhhhhhhhhhh....hhhhhh.hhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhheee....eeeeee...hhhhhhhhhhhhh...eeeeee...----.hhhhhhhhhhhhh..------...hhhhhhhhhhhh..hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh.hhhhhhheeeeeeeeeee...eeeeeeee........eeeee.......hhhhhhhhhhh....ee...............ee....hhhhhhhhhhhhhh.hhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhh...----------........hhhhhhhhhh.eee......eee.....hhhhhhhhhhhh....hhhhhh.......hhhhhhhhhhhhhh. Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1m6x B 2 SQFDILCKTPPKVLVRQFVERFERPSGEKIASCAAELTYLCWMITHNGTAIKRATFMSYNTIISNSLSFDIVNKSLQFKYKTQKATILEASLKKLIPAWEFTIIPYNG----SDITDIVSSLQLQFES------GNSHSKKMLKALLSEGESIWEITEKILNSFEYTSRFTKTKTLYQFLFLATFINCGRFSDIKNVDPKSFKLVQNKYLGVIIQCLVTETKTSVSRHIYFFSARGRIDPLVYLDEFLRNSEPVLKRVNRTGNSSSNKQEYQLLKDNLVRSYNKALKKNAPYPIFAIKNGPKSHIGRHLMTSFLSMKGLTELTNVVGNWSD----------YTHQITAIPDHYFALVSRYYAYDPISKEMIALKDETNPIEEWQHIEQLKGSAEGSIRYPAWNGIISQEVLDYLSSYINRR 422
11 21 31 41 51 61 71 81 91 101 | - | 121 | - | 141 151 161 171 181 191 201 211 221 231 241 251 261 271 281 291 301 311 321 331| - | 351 361 371 381 391 401 411 421
109 114 129 136 332 343
Chain C from PDB Type:PROTEIN Length:400
aligned with FLP_YEAST | P03870 from UniProtKB/Swiss-Prot Length:423
Alignment length:421
11 21 31 41 51 61 71 81 91 101 111 121 131 141 151 161 171 181 191 201 211 221 231 241 251 261 271 281 291 301 311 321 331 341 351 361 371 381 391 401 411 421
FLP_YEAST 2 PQFGILCKTPPKVLVRQFVERFERPSGEKIALCAAELTYLCWMITHNGTAIKRATFMSYNTIISNSLSFDIVNKSLQFKYKTQKATILEASLKKLIPAWEFTIIPYYGQKHQSDITDIVSSLQLQFESSEEADKGNSHSKKMLKALLSEGESIWEITEKILNSFEYTSRFTKTKTLYQFLFLATFINCGRFSDIKNVDPKSFKLVQNKYLGVIIQCLVTETKTSVSRHIYFFSARGRIDPLVYLDEFLRNSEPVLKRVNRTGNSSSNKQEYQLLKDNLVRSYNKALKKNAPYSIFAIKNGPKSHIGRHLMTSFLSMKGLTELTNVVGNWSDKRASAVARTTYTHQITAIPDHYFALVSRYYAYDPISKEMIALKDETNPIEEWQHIEQLKGSAEGSIRYPAWNGIISQEVLDYLSSYINRR 422
SCOP domains d1m6xc1 C:2-129 Flp recombinase d1m6xc2 C:137-422 Flp recombinase SCOP domains
CATH domains -1m6xC01 C:3-106 FLP Recombinase, lambda integrase-like, N-terminal domain (domain 1) -- ---------------- 1m6xC02 C:137-417 Intergrase catalytic core ----- CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author hhhhhhhhhhhhhhhhhhhhh....hhhhhh.hhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhheee....eeeeee...hhhhhhhhhhhhh...eeeeee..-----.hhhhhhhhhhhhh..-------hhhhhhhhhhhhh...hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh.hhhhhhheeeeeeeeeee...eeeeeeee........eeeee.......hhhhhhhhhhh....ee.......----....ee....hhhhhhhhhhhhhh.hhhhhh......hhhhhhhhhhhhhh.hhhhhhhhhh......hhhhhhhh.......hhhhhhhhh..eeee....eeee.....hhhhhhhhhhh-----hhhhhh.......hhhhhhhhhhhhhh. Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1m6x C 2 SQFDILCKTPPKVLVRQFVERFERPSGEKIASCAAELTYLCWMITHNGTAIKRATFMSYNTIISNSLSFDIVNKSLQFKYKTQKATILEASLKKLIPAWEFTIIPYN-----SDITDIVSSLQLQFES-------NSHSKKMLKALLSEGESIWEITEKILNSFEYTSRFTKTKTLYQFLFLATFINCGRFSDIKNVDPKSFKLVQNKYLGVIIQCLVTETKTSVSRHIYFFSARGRIDPLVYLDEFLRNSEPVLKRVNRTG----NKQEYQLLKDNLVRSYNKALKKNAPYPIFAIKNGPKSHIGRHLMTSFLSMKGLTELTNVVGNWSDKRASAVARTTyTHQITAIPDHYFALVSRYYAYDPISKEMIALKDETNPIEEWQHIEQ-----EGSIRYPAWNGIISQEVLDYLSSYINRR 422
11 21 31 41 51 61 71 81 91 101 | - | 121 | - | 141 151 161 171 181 191 201 211 221 231 241 251 261 | |271 281 291 301 311 321 331 341 | 351 361 371 381 | - | 401 411 421
108 114 129 137 263 268 343-PTR 389 395
Chain D from PDB Type:PROTEIN Length:400
aligned with FLP_YEAST | P03870 from UniProtKB/Swiss-Prot Length:423
Alignment length:421
11 21 31 41 51 61 71 81 91 101 111 121 131 141 151 161 171 181 191 201 211 221 231 241 251 261 271 281 291 301 311 321 331 341 351 361 371 381 391 401 411 421
FLP_YEAST 2 PQFGILCKTPPKVLVRQFVERFERPSGEKIALCAAELTYLCWMITHNGTAIKRATFMSYNTIISNSLSFDIVNKSLQFKYKTQKATILEASLKKLIPAWEFTIIPYYGQKHQSDITDIVSSLQLQFESSEEADKGNSHSKKMLKALLSEGESIWEITEKILNSFEYTSRFTKTKTLYQFLFLATFINCGRFSDIKNVDPKSFKLVQNKYLGVIIQCLVTETKTSVSRHIYFFSARGRIDPLVYLDEFLRNSEPVLKRVNRTGNSSSNKQEYQLLKDNLVRSYNKALKKNAPYSIFAIKNGPKSHIGRHLMTSFLSMKGLTELTNVVGNWSDKRASAVARTTYTHQITAIPDHYFALVSRYYAYDPISKEMIALKDETNPIEEWQHIEQLKGSAEGSIRYPAWNGIISQEVLDYLSSYINRR 422
SCOP domains d1m6xd1 D:2-129 Flp recombinase d1m6xd2 D:137-422 Flp recombinase SCOP domains
CATH domains -1m6xD01 D:3-106 FLP Recombinase, lambda integrase-like, N-terminal domain (domain 1) -- ---------------- 1m6xD02 D:137-417 Intergrase catalytic core ----- CATH domains
Pfam domains (1) ------------------------------------------Flp_N-1m6xD05 D:44-128 - Flp_C-1m6xD01 D:137-380 --------- ---------------------------- Pfam domains (1)
Pfam domains (2) ------------------------------------------Flp_N-1m6xD06 D:44-128 - Flp_C-1m6xD02 D:137-380 --------- ---------------------------- Pfam domains (2)
Pfam domains (3) ------------------------------------------Flp_N-1m6xD07 D:44-128 - Flp_C-1m6xD03 D:137-380 --------- ---------------------------- Pfam domains (3)
Pfam domains (4) ------------------------------------------Flp_N-1m6xD08 D:44-128 - Flp_C-1m6xD04 D:137-380 --------- ---------------------------- Pfam domains (4)
Sec.struct. author hhhhhhhhhhhhhhhhhhhhh....hhhhhh.hhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhheee....eeeeee...hhhhhhhhhhhhh...eeeeee..-----.hhhhhhhhhhhhh..-------hhhhhhhhhhhhh...hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh.hhhhhhh.hhhhheeeee...eeeeeeee........eeeee.......hhhhhhhhhhh....ee........----...ee....hhhhhhhhhhhhhh.hhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh......hhhhhhhhhh.eeee....eeee.....hhhhhhhhhhh-----hhhhhh.......hhhhhhhhhhhhhh. Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1m6x D 2 SQFDILCKTPPKVLVRQFVERFERPSGEKIASCAAELTYLCWMITHNGTAIKRATFMSYNTIISNSLSFDIVNKSLQFKYKTQKATILEASLKKLIPAWEFTIIPYN-----SDITDIVSSLQLQFES-------NSHSKKMLKALLSEGESIWEITEKILNSFEYTSRFTKTKTLYQFLFLATFINCGRFSDIKNVDPKSFKLVQNKYLGVIIQCLVTETKTSVSRHIYFFSARGRIDPLVYLDEFLRNSEPVLKRVNRTGN----KQEYQLLKDNLVRSYNKALKKNAPYPIFAIKNGPKSHIGRHLMTSFLSMKGLTELTNVVGNWSDKRASAVARTTyTHQITAIPDHYFALVSRYYAYDPISKEMIALKDETNPIEEWQHIEQ-----EGSIRYPAWNGIISQEVLDYLSSYINRR 422
11 21 31 41 51 61 71 81 91 101 | - | 121 | - | 141 151 161 171 181 191 201 211 221 231 241 251 261 | 271 281 291 301 311 321 331 341 | 351 361 371 381 | - | 401 411 421
108 114 129 137 264 269 343-PTR 389 395
Chain E from PDB Type:DNA Length:13
1m6x E 1 TAAGTTCCTATTC 13
10
Chain F from PDB Type:DNA Length:13
1m6x F 1 TAAGTTCCTATTC 13
10
Chain G from PDB Type:DNA Length:33
1m6x G 1 TAAGTTCCTATTCTTTAAAAGAATAGGAACTTC 33
10 20 30
Chain H from PDB Type:DNA Length:33
1m6x H 1 TAAGTTCCTATTCTTTAAAAGAATAGGAACTTC 33
10 20 30
Chain I from PDB Type:DNA Length:19
1m6x I 14 TTTAAAAGAATAGGAACTT 32
23
Chain J from PDB Type:DNA Length:20
1m6x J 14 TTTAAAAGAATAGGAACTTC 33
23 33
Legend: |
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→ Mismatch |
(orange background) |
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- |
→ Gap |
(green background, '-', border residues have a numbering label) |
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→ Modified Residue |
(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name) |
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x |
→ Chemical Group |
(purple background, 'x', labelled with number + name, e.g. ACE or NH2) |
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extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|' |