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1M6X
Asym. Unit
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Asym.Unit (320 KB)
Biol.Unit 1 (313 KB)
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(1)
Title
:
FLPE-HOLLIDAY JUNCTION COMPLEX
Authors
:
A. B. Conway, Y. Chen, P. A. Rice
Date
:
17 Jul 02 (Deposition) - 04 Feb 03 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J (1x)
Keywords
:
Tyrosine Recombinase, Protein-Dna Complex, Holliday- Junction, Domain-Swapping, Ligase, Lyase/Dna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. B. Conway, Y. Chen, P. A. Rice
Structural Plasticity Of The Flp-Holliday Junction Complex
J. Mol. Biol. V. 326 425 2003
(for further references see the
PDB file header
)
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: O-PHOSPHOTYROSINE (PTRa)
1b: O-PHOSPHOTYROSINE (PTRb)
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No.
Name
Count
Type
Full Name
1
PTR
2
Mod. Amino Acid
O-PHOSPHOTYROSINE
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Sites
(4, 4)
Info
All Sites
1: CTA (AUTHOR)
2: CTB (AUTHOR)
3: CTC (AUTHOR)
4: CTD (AUTHOR)
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No.
Name
Evidence
Residues
Description
1
CTA
AUTHOR
ARG A:191 , LYS A:223 , HIS A:305 , ARG A:308 , TRP A:330 , ARG B:191
ACTIVE CATALYTIC SITE OF MONOMER A. Y343 IS DONATED BY MONOMER D.
2
CTB
AUTHOR
LYS B:223 , HIS B:305 , ARG B:308 , TRP B:330 , ARG C:191 , LYS C:223
ACTIVE CATALYTIC SITE OF MONOMER B. Y343 IS DONATED BY MONOMER C.
3
CTC
AUTHOR
HIS C:305 , ARG C:308 , TRP C:330 , ARG D:191 , HIS D:305
INACTIVE CATALYTIC SITE OF MONOMER C. Y343 IS DONATED BY MONOMER A IS DISORDERED.
4
CTD
AUTHOR
ARG D:191 , LYS D:223 , HIS D:305 , ARG D:308 , TRP D:330
INACTIVE CATALYTIC SITE OF MONOMER D. Y343 IS DONATED BY MONOMER B.
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d1m6xa1 (A:2-129)
1b: SCOP_d1m6xc1 (C:2-129)
1c: SCOP_d1m6xd1 (D:2-129)
1d: SCOP_d1m6xb1 (B:2-129)
2a: SCOP_d1m6xa2 (A:136-422)
2b: SCOP_d1m6xc2 (C:137-422)
2c: SCOP_d1m6xd2 (D:137-422)
2d: SCOP_d1m6xb2 (B:136-422)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
SAM domain-like
(639)
Superfamily
:
lambda integrase-like, N-terminal domain
(25)
Family
:
lambda integrase-like, N-terminal domain
(24)
Protein domain
:
Flp recombinase
(3)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(3)
1a
d1m6xa1
A:2-129
1b
d1m6xc1
C:2-129
1c
d1m6xd1
D:2-129
1d
d1m6xb1
B:2-129
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
DNA breaking-rejoining enzymes
(47)
Superfamily
:
DNA breaking-rejoining enzymes
(47)
Family
:
Lambda integrase-like, catalytic core
(31)
Protein domain
:
Flp recombinase
(3)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(3)
2a
d1m6xa2
A:136-422
2b
d1m6xc2
C:137-422
2c
d1m6xd2
D:137-422
2d
d1m6xb2
B:136-422
[
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CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_1m6xA01 (A:3-107)
1b: CATH_1m6xC01 (C:3-106)
1c: CATH_1m6xD01 (D:3-106)
1d: CATH_1m6xB01 (B:3-107)
2a: CATH_1m6xA02 (A:137-419)
2b: CATH_1m6xB02 (B:137-419)
2c: CATH_1m6xC02 (C:137-417)
2d: CATH_1m6xD02 (D:137-417)
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
GMP Synthetase; Chain A, domain 3
(192)
Homologous Superfamily
:
FLP Recombinase, lambda integrase-like, N-terminal domain (domain 1)
(3)
[unclassified]
(3)
1a
1m6xA01
A:3-107
1b
1m6xC01
C:3-106
1c
1m6xD01
D:3-106
1d
1m6xB01
B:3-107
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
hpI Integrase; Chain A
(31)
Homologous Superfamily
:
Intergrase catalytic core
(31)
[unclassified]
(26)
2a
1m6xA02
A:137-419
2b
1m6xB02
B:137-419
2c
1m6xC02
C:137-417
2d
1m6xD02
D:137-417
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Pfam Domains
(2, 8)
Info
all PFAM domains
1a: PFAM_Flp_C_1m6xD01 (D:137-380)
1b: PFAM_Flp_C_1m6xD02 (D:137-380)
1c: PFAM_Flp_C_1m6xD03 (D:137-380)
1d: PFAM_Flp_C_1m6xD04 (D:137-380)
2a: PFAM_Flp_N_1m6xD05 (D:44-128)
2b: PFAM_Flp_N_1m6xD06 (D:44-128)
2c: PFAM_Flp_N_1m6xD07 (D:44-128)
2d: PFAM_Flp_N_1m6xD08 (D:44-128)
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Clan
:
DNA-mend
(28)
Family
:
Flp_C
(1)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Bakers yeast)
(1)
1a
Flp_C-1m6xD01
D:137-380
1b
Flp_C-1m6xD02
D:137-380
1c
Flp_C-1m6xD03
D:137-380
1d
Flp_C-1m6xD04
D:137-380
Clan
:
no clan defined [family: Flp_N]
(1)
Family
:
Flp_N
(1)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Bakers yeast)
(1)
2a
Flp_N-1m6xD05
D:44-128
2b
Flp_N-1m6xD06
D:44-128
2c
Flp_N-1m6xD07
D:44-128
2d
Flp_N-1m6xD08
D:44-128
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Asymmetric Unit 1
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