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1K78
Biol. Unit 1
Info
Asym.Unit (146 KB)
Biol.Unit 1 (77 KB)
Biol.Unit 2 (65 KB)
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(1)
Title
:
PAX5(1-149)+ETS-1(331-440)+DNA
Authors
:
C. W. Garvie, J. Hagman, C. Wolberger
Date
:
18 Oct 01 (Deposition) - 04 Jan 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.25
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I
Biol. Unit 1: A,B,C,D,I (1x)
Biol. Unit 2: E,F,G,H (1x)
Keywords
:
Paired Domain, Ets Domain, Transcription Factor, Transcription/Dna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. W. Garvie, J. Hagman, C. Wolberger
Structural Studies Of Ets-1/Pax5 Complex Formation On Dna.
Mol. Cell V. 8 1267 2001
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
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Sorry, no Info available
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SAPs(SNPs)/Variants
(9, 10)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_070672 (G24R, chain A, )
2: VAR_070673 (V26G, chain A, )
3: VAR_070674 (P34Q, chain A, )
4: VAR_070675 (D53V, chain A, )
5: VAR_070676 (R59G, chain A, )
6: VAR_070677 (S66N, chain A, )
7: VAR_070678 (T75R, chain A, )
8: VAR_070679 (P80R, chain A, )
9: VAR_070680 (I139T, chain A/I, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_070672
G
24
R
PAX5_HUMAN
Polymorphism
---
A
G
24
R
2
UniProt
VAR_070673
V
26
G
PAX5_HUMAN
Polymorphism
---
A
V
26
G
3
UniProt
VAR_070674
P
34
Q
PAX5_HUMAN
Polymorphism
---
A
P
34
Q
4
UniProt
VAR_070675
D
53
V
PAX5_HUMAN
Polymorphism
---
A
D
53
V
5
UniProt
VAR_070676
R
59
G
PAX5_HUMAN
Polymorphism
---
A
R
59
G
6
UniProt
VAR_070677
S
66
N
PAX5_HUMAN
Polymorphism
---
A
S
66
N
7
UniProt
VAR_070678
T
75
R
PAX5_HUMAN
Polymorphism
---
A
T
75
R
8
UniProt
VAR_070679
P
80
R
PAX5_HUMAN
Polymorphism
---
A
P
80
R
9
UniProt
VAR_070680
I
139
T
PAX5_HUMAN
Polymorphism
---
A/I
I
139
T
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(4, 4)
Info
All PROSITE Patterns/Profiles
1: PAIRED_1 (A:50-66)
2: ETS_DOMAIN_3 (B:335-415)
3: ETS_DOMAIN_1 (B:337-345)
4: ETS_DOMAIN_2 (B:381-396)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PAIRED_1
PS00034
Paired domain signature.
PAX5_HUMAN
50-66
1
A:50-66
-
2
ETS_DOMAIN_3
PS50061
Ets-domain profile.
ETS1_MOUSE
335-415
1
B:335-415
-
3
ETS_DOMAIN_1
PS00345
Ets-domain signature 1.
ETS1_MOUSE
337-345
1
B:337-345
-
4
ETS_DOMAIN_2
PS00346
Ets-domain signature 2.
ETS1_MOUSE
381-396
1
B:381-396
-
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 7)
Info
All SCOP Domains
1a: SCOP_d1k78a1 (A:19-81)
1b: SCOP_d1k78a2 (A:82-142)
1c: SCOP_d1k78e1 (E:19-81)
1d: SCOP_d1k78e2 (E:82-142)
1e: SCOP_d1k78i1 (I:84-141)
2a: SCOP_d1k78b_ (B:)
2b: SCOP_d1k78f_ (F:)
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
DNA/RNA-binding 3-helical bundle
(1299)
Superfamily
:
Homeodomain-like
(373)
Family
:
Paired domain
(4)
Protein domain
:
Pax-5
(2)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d1k78a1
A:19-81
1b
d1k78a2
A:82-142
1c
d1k78e1
E:19-81
1d
d1k78e2
E:82-142
1e
d1k78i1
I:84-141
Superfamily
:
Winged helix DNA-binding domain
(576)
Family
:
ets domain
(23)
Protein domain
:
ETS-1 transcription factor, residues 331-440
(9)
Mouse (Mus musculus) [TaxId: 10090]
(6)
2a
d1k78b_
B:
2b
d1k78f_
F:
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CATH Domains
(1, 7)
Info
all CATH domains
1a: CATH_1k78A01 (A:19-84)
1b: CATH_1k78E01 (E:19-84)
1c: CATH_1k78B00 (B:335-436)
1d: CATH_1k78F00 (F:334-436)
1e: CATH_1k78I00 (I:84-141)
1f: CATH_1k78A02 (A:85-139)
1g: CATH_1k78E02 (E:85-138)
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)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Arc Repressor Mutant, subunit A
(1030)
Homologous Superfamily
:
'winged helix' repressor DNA binding domain
(507)
[unclassified]
(77)
1a
1k78A01
A:19-84
1b
1k78E01
E:19-84
1c
1k78B00
B:335-436
1d
1k78F00
F:334-436
1e
1k78I00
I:84-141
1f
1k78A02
A:85-139
1g
1k78E02
E:85-138
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Pfam Domains
(2, 5)
Info
all PFAM domains
1a: PFAM_Ets_1k78F01 (F:334-417)
1b: PFAM_Ets_1k78F02 (F:334-417)
2a: PFAM_PAX_1k78I01 (I:84-140)
2b: PFAM_PAX_1k78I02 (I:84-140)
2c: PFAM_PAX_1k78I03 (I:84-140)
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Organisms
(
)
(
)
Clan
:
HTH
(544)
Family
:
Ets
(14)
Mus musculus (Mouse)
(8)
1a
Ets-1k78F01
F:334-417
1b
Ets-1k78F02
F:334-417
Family
:
PAX
(4)
Homo sapiens (Human)
(3)
2a
PAX-1k78I01
I:84-140
2b
PAX-1k78I02
I:84-140
2c
PAX-1k78I03
I:84-140
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Asymmetric Unit 1
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Asym.Unit (146 KB)
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