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(-) Description

Title :  MONOCLINIC FORM OF HUMAN PEROXIREDOXIN 5
 
Authors :  J. P. Declercq, C. Evrard
Date :  11 May 01  (Deposition) - 23 Oct 01  (Release) - 05 Feb 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.95
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Biol. Unit 5:  E  (1x)
Biol. Unit 6:  F  (1x)
Biol. Unit 7:  G  (1x)
Biol. Unit 8:  H  (1x)
Keywords :  Antioxidant Enzyme, Thioredoxin Perothioredoxin, Foldxidase, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  J. P. Declercq, C. Evrard, A. Clippe, D. V. Stricht, A. Bernard, B. Knoops
Crystal Structure Of Human Peroxiredoxin 5, A Novel Type Of Mammalian Peroxiredoxin At 1. 5 A Resolution
J. Mol. Biol. V. 311 751 2001
PubMed-ID: 11518528  |  Reference-DOI: 10.1006/JMBI.2001.4853
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - PEROXIREDOXIN 5
    ChainsA, B, C, D, E, F, G, H
    EC Number1.11.1.15
    EngineeredYES
    Expression SystemESCHERICHIA COLI M15
    Expression System PlasmidPQE-30
    Expression System Taxid1007065
    Expression System Vector TypePLASMID
    FragmentRESIDUES 54-214
    OrganLUNG
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymPRDX5, PRXV, AOEB166, PMP20, ARC1

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit ABCDEFGH
Biological Unit 1 (1x)A       
Biological Unit 2 (1x) B      
Biological Unit 3 (1x)  C     
Biological Unit 4 (1x)   D    
Biological Unit 5 (1x)    E   
Biological Unit 6 (1x)     F  
Biological Unit 7 (1x)      G 
Biological Unit 8 (1x)       H

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 8)

Asymmetric Unit (1, 8)
No.NameCountTypeFull Name
1BEZ8Ligand/IonBENZOIC ACID
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1BEZ1Ligand/IonBENZOIC ACID
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1BEZ1Ligand/IonBENZOIC ACID
Biological Unit 3 (1, 1)
No.NameCountTypeFull Name
1BEZ1Ligand/IonBENZOIC ACID
Biological Unit 4 (1, 1)
No.NameCountTypeFull Name
1BEZ1Ligand/IonBENZOIC ACID
Biological Unit 5 (1, 1)
No.NameCountTypeFull Name
1BEZ1Ligand/IonBENZOIC ACID
Biological Unit 6 (1, 1)
No.NameCountTypeFull Name
1BEZ1Ligand/IonBENZOIC ACID
Biological Unit 7 (1, 1)
No.NameCountTypeFull Name
1BEZ1Ligand/IonBENZOIC ACID
Biological Unit 8 (1, 1)
No.NameCountTypeFull Name
1BEZ1Ligand/IonBENZOIC ACID

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPRO A:40 , THR A:44 , PRO A:45 , GLY A:46 , CYS A:47 , ARG A:127 , ALA B:64BINDING SITE FOR RESIDUE BEZ A1162
2AC2SOFTWAREPRO B:40 , THR B:44 , PRO B:45 , GLY B:46 , CYS B:47 , ARG B:127 , ALA C:64 , HOH C:2092BINDING SITE FOR RESIDUE BEZ B1162
3AC3SOFTWARETHR C:44 , PRO C:45 , GLY C:46 , CYS C:47 , ARG C:127 , HOH C:2188 , LYS D:63 , ALA D:64 , GLY D:66BINDING SITE FOR RESIDUE BEZ C1162
4AC4SOFTWAREPRO D:40 , THR D:44 , PRO D:45 , GLY D:46 , CYS D:47 , ARG D:127 , HOH D:2184 , ALA E:64 , GLY E:66BINDING SITE FOR RESIDUE BEZ D1162
5AC5SOFTWARETHR E:44 , PRO E:45 , GLY E:46 , CYS E:47 , ARG E:127 , HOH E:2128 , LYS F:63 , ALA F:64 , GLY F:66BINDING SITE FOR RESIDUE BEZ E1162
6AC6SOFTWARETHR F:44 , PRO F:45 , GLY F:46 , CYS F:47 , ARG F:127 , HOH F:2160 , LYS G:63 , ALA G:64 , GLY G:66BINDING SITE FOR RESIDUE BEZ F1162
7AC7SOFTWARETHR G:44 , PRO G:45 , GLY G:46 , CYS G:47 , PHE G:120 , ARG G:127 , HOH G:2139 , ALA H:64BINDING SITE FOR RESIDUE BEZ G1162
8AC8SOFTWAREALA A:64 , HOH A:2090 , PRO H:40 , THR H:44 , PRO H:45 , GLY H:46 , CYS H:47 , ARG H:127BINDING SITE FOR RESIDUE BEZ H1162

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1H4O)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1H4O)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (2, 16)

Asymmetric Unit (2, 16)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_036406F157LPRDX5_HUMANUnclassified  ---A/B/C/D/E/F/G/HF104L
2CancerSNPVAR_PRDX5_HUMAN_CCDS8069_1_01 *F157LPRDX5_HUMANDisease (Breast cancer)  ---A/B/C/D/E/F/G/HF104L
   * ID not provided by source

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 1 (2, 2)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_036406F157LPRDX5_HUMANUnclassified  ---AF104L
2CancerSNPVAR_PRDX5_HUMAN_CCDS8069_1_01 *F157LPRDX5_HUMANDisease (Breast cancer)  ---AF104L
   * ID not provided by source

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 2 (2, 2)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_036406F157LPRDX5_HUMANUnclassified  ---BF104L
2CancerSNPVAR_PRDX5_HUMAN_CCDS8069_1_01 *F157LPRDX5_HUMANDisease (Breast cancer)  ---BF104L
   * ID not provided by source

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 3 (2, 2)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_036406F157LPRDX5_HUMANUnclassified  ---CF104L
2CancerSNPVAR_PRDX5_HUMAN_CCDS8069_1_01 *F157LPRDX5_HUMANDisease (Breast cancer)  ---CF104L
   * ID not provided by source

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 4 (2, 2)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_036406F157LPRDX5_HUMANUnclassified  ---DF104L
2CancerSNPVAR_PRDX5_HUMAN_CCDS8069_1_01 *F157LPRDX5_HUMANDisease (Breast cancer)  ---DF104L
   * ID not provided by source

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 5 (2, 2)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_036406F157LPRDX5_HUMANUnclassified  ---EF104L
2CancerSNPVAR_PRDX5_HUMAN_CCDS8069_1_01 *F157LPRDX5_HUMANDisease (Breast cancer)  ---EF104L
   * ID not provided by source

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 6 (2, 2)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_036406F157LPRDX5_HUMANUnclassified  ---FF104L
2CancerSNPVAR_PRDX5_HUMAN_CCDS8069_1_01 *F157LPRDX5_HUMANDisease (Breast cancer)  ---FF104L
   * ID not provided by source

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 7 (2, 2)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_036406F157LPRDX5_HUMANUnclassified  ---GF104L
2CancerSNPVAR_PRDX5_HUMAN_CCDS8069_1_01 *F157LPRDX5_HUMANDisease (Breast cancer)  ---GF104L
   * ID not provided by source

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 8 (2, 2)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_036406F157LPRDX5_HUMANUnclassified  ---HF104L
2CancerSNPVAR_PRDX5_HUMAN_CCDS8069_1_01 *F157LPRDX5_HUMANDisease (Breast cancer)  ---HF104L
   * ID not provided by source

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (1, 8)

Asymmetric Unit (1, 8)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1THIOREDOXIN_2PS51352 Thioredoxin domain profile.PRDX5_HUMAN56-214
 
 
 
 
 
 
 
  8A:3-161
B:3-161
C:3-161
D:3-161
E:3-161
F:3-161
G:3-161
H:3-161
Biological Unit 1 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1THIOREDOXIN_2PS51352 Thioredoxin domain profile.PRDX5_HUMAN56-214
 
 
 
 
 
 
 
  1A:3-161
-
-
-
-
-
-
-
Biological Unit 2 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1THIOREDOXIN_2PS51352 Thioredoxin domain profile.PRDX5_HUMAN56-214
 
 
 
 
 
 
 
  1-
B:3-161
-
-
-
-
-
-
Biological Unit 3 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1THIOREDOXIN_2PS51352 Thioredoxin domain profile.PRDX5_HUMAN56-214
 
 
 
 
 
 
 
  1-
-
C:3-161
-
-
-
-
-
Biological Unit 4 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1THIOREDOXIN_2PS51352 Thioredoxin domain profile.PRDX5_HUMAN56-214
 
 
 
 
 
 
 
  1-
-
-
D:3-161
-
-
-
-
Biological Unit 5 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1THIOREDOXIN_2PS51352 Thioredoxin domain profile.PRDX5_HUMAN56-214
 
 
 
 
 
 
 
  1-
-
-
-
E:3-161
-
-
-
Biological Unit 6 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1THIOREDOXIN_2PS51352 Thioredoxin domain profile.PRDX5_HUMAN56-214
 
 
 
 
 
 
 
  1-
-
-
-
-
F:3-161
-
-
Biological Unit 7 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1THIOREDOXIN_2PS51352 Thioredoxin domain profile.PRDX5_HUMAN56-214
 
 
 
 
 
 
 
  1-
-
-
-
-
-
G:3-161
-
Biological Unit 8 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1THIOREDOXIN_2PS51352 Thioredoxin domain profile.PRDX5_HUMAN56-214
 
 
 
 
 
 
 
  1-
-
-
-
-
-
-
H:3-161

(-) Exons   (6, 48)

Asymmetric Unit (6, 48)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1ENST000002654621ENSE00001265861chr11:64085569-64085858290PRDX5_HUMAN1-57578A:1-4
B:1-4
C:1-4
D:1-4
E:1-4
F:1-4
G:1-4
H:1-4
4
4
4
4
4
4
4
4
1.2ENST000002654622ENSE00001317366chr11:64087206-64087340135PRDX5_HUMAN58-102458A:5-49
B:5-49
C:5-49
D:5-49
E:5-49
F:5-49
G:5-49
H:5-49
45
45
45
45
45
45
45
45
1.3ENST000002654623ENSE00001291509chr11:64088133-64088264132PRDX5_HUMAN103-146448A:50-93
B:50-93
C:50-93
D:50-93
E:50-93
F:50-93
G:50-93
H:50-93
44
44
44
44
44
44
44
44
1.4ENST000002654624ENSE00001313724chr11:64088337-6408837539PRDX5_HUMAN147-159138A:94-106
B:94-106
C:94-106
D:94-106
E:94-106
F:94-106
G:94-106
H:94-106
13
13
13
13
13
13
13
13
1.5ENST000002654625ENSE00000992394chr11:64088479-6408854062PRDX5_HUMAN160-180218A:107-127
B:107-127
C:107-127
D:107-127
E:107-127
F:107-127
G:107-127
H:107-127
21
21
21
21
21
21
21
21
1.6ENST000002654626ENSE00001195244chr11:64089058-64089282225PRDX5_HUMAN180-214358A:127-161
B:127-161
C:127-161
D:127-161
E:127-161
F:127-161
G:127-161
H:127-161
35
35
35
35
35
35
35
35

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:161
 aligned with PRDX5_HUMAN | P30044 from UniProtKB/Swiss-Prot  Length:214

    Alignment length:161
                                    63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213 
          PRDX5_HUMAN    54 APIKVGDAIPAVEVFEGEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKGVQVVACLSVNDAFVTGEWGRAHKAEGKVRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQDGIVKALNVEPDGTGLTCSLAPNIISQL 214
               SCOP domains d1h4oa_ A: Peroxiredoxin 5                                                                                                                                        SCOP domains
               CATH domains 1h4oA00 A:1-161 Glutaredoxin                                                                                                                                      CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eeeee....eeeehhhhh..eeeeeeee....hhhhhhhhhhhhhhhhhhhhh....eeeeee..hhhhhhhhhhhh......eeeee..hhhhhhhh......hhhhhh.....eeeeeeee.eeeeeeee.........hhhhhhh.. Sec.struct. author
             SAPs(SNPs) (1) -------------------------------------------------------------------------------------------------------L--------------------------------------------------------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) -------------------------------------------------------------------------------------------------------L--------------------------------------------------------- SAPs(SNPs) (2)
                    PROSITE --THIOREDOXIN_2  PDB: A:3-161 UniProt: 56-214                                                                                                                     PROSITE
           Transcript 1 (1) 1.1 Exon 1.2  PDB: A:5-49 UniProt: 58-102        Exon 1.3  PDB: A:50-93 UniProt: 103-146     Exon 1.4     Exon 1.5             ---------------------------------- Transcript 1 (1)
           Transcript 1 (2) ------------------------------------------------------------------------------------------------------------------------------Exon 1.6  PDB: A:127-161            Transcript 1 (2)
                 1h4o A   1 APIKVGDAIPAVEVFEGEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKGVQVVACLSVNDAFVTGEWGRAHKAEGKVRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQDGIVKALNVEPDGTGLTCSLAPNIISQL 161
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160 

Chain B from PDB  Type:PROTEIN  Length:161
 aligned with PRDX5_HUMAN | P30044 from UniProtKB/Swiss-Prot  Length:214

    Alignment length:161
                                    63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213 
          PRDX5_HUMAN    54 APIKVGDAIPAVEVFEGEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKGVQVVACLSVNDAFVTGEWGRAHKAEGKVRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQDGIVKALNVEPDGTGLTCSLAPNIISQL 214
               SCOP domains d1h4ob_ B: Peroxiredoxin 5                                                                                                                                        SCOP domains
               CATH domains 1h4oB00 B:1-161 Glutaredoxin                                                                                                                                      CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eeeee....eeeehhhhh..eeeeeeee....hhhhhhhhhhhhhhhhhhhhh....eeeeee..hhhhhhhhhhhh......eeeee..hhhhhhhh......hhhhhh.....eeeeeeee.eeeeeeee.........hhhhhhhhh Sec.struct. author
             SAPs(SNPs) (1) -------------------------------------------------------------------------------------------------------L--------------------------------------------------------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) -------------------------------------------------------------------------------------------------------L--------------------------------------------------------- SAPs(SNPs) (2)
                    PROSITE --THIOREDOXIN_2  PDB: B:3-161 UniProt: 56-214                                                                                                                     PROSITE
           Transcript 1 (1) 1.1 Exon 1.2  PDB: B:5-49 UniProt: 58-102        Exon 1.3  PDB: B:50-93 UniProt: 103-146     Exon 1.4     Exon 1.5             ---------------------------------- Transcript 1 (1)
           Transcript 1 (2) ------------------------------------------------------------------------------------------------------------------------------Exon 1.6  PDB: B:127-161            Transcript 1 (2)
                 1h4o B   1 APIKVGDAIPAVEVFEGEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKGVQVVACLSVNDAFVTGEWGRAHKAEGKVRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQDGIVKALNVEPDGTGLTCSLAPNIISQL 161
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160 

Chain C from PDB  Type:PROTEIN  Length:161
 aligned with PRDX5_HUMAN | P30044 from UniProtKB/Swiss-Prot  Length:214

    Alignment length:161
                                    63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213 
          PRDX5_HUMAN    54 APIKVGDAIPAVEVFEGEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKGVQVVACLSVNDAFVTGEWGRAHKAEGKVRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQDGIVKALNVEPDGTGLTCSLAPNIISQL 214
               SCOP domains d1h4oc_ C: Peroxiredoxin 5                                                                                                                                        SCOP domains
               CATH domains 1h4oC00 C:1-161 Glutaredoxin                                                                                                                                      CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eeeee....eeeehhhhh..eeeeeeee....hhhhhhhhhhhhhhhhhhhhh....eeeeee..hhhhhhhhhhhh......eeeee..hhhhhhhh......hhhhhh.....eeeeeeee.eeeeeeee.........hhhhhhhhh Sec.struct. author
             SAPs(SNPs) (1) -------------------------------------------------------------------------------------------------------L--------------------------------------------------------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) -------------------------------------------------------------------------------------------------------L--------------------------------------------------------- SAPs(SNPs) (2)
                    PROSITE --THIOREDOXIN_2  PDB: C:3-161 UniProt: 56-214                                                                                                                     PROSITE
           Transcript 1 (1) 1.1 Exon 1.2  PDB: C:5-49 UniProt: 58-102        Exon 1.3  PDB: C:50-93 UniProt: 103-146     Exon 1.4     Exon 1.5             ---------------------------------- Transcript 1 (1)
           Transcript 1 (2) ------------------------------------------------------------------------------------------------------------------------------Exon 1.6  PDB: C:127-161            Transcript 1 (2)
                 1h4o C   1 APIKVGDAIPAVEVFEGEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKGVQVVACLSVNDAFVTGEWGRAHKAEGKVRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQDGIVKALNVEPDGTGLTCSLAPNIISQL 161
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160 

Chain D from PDB  Type:PROTEIN  Length:161
 aligned with PRDX5_HUMAN | P30044 from UniProtKB/Swiss-Prot  Length:214

    Alignment length:161
                                    63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213 
          PRDX5_HUMAN    54 APIKVGDAIPAVEVFEGEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKGVQVVACLSVNDAFVTGEWGRAHKAEGKVRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQDGIVKALNVEPDGTGLTCSLAPNIISQL 214
               SCOP domains d1h4od_ D: Peroxiredoxin 5                                                                                                                                        SCOP domains
               CATH domains 1h4oD00 D:1-161 Glutaredoxin                                                                                                                                      CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eeeee....eeeehhhhh..eeeeeeee....hhhhhhhhhhhhhhhhhhhhh....eeeeee..hhhhhhhhhhhh......eeeee..hhhhhhhh......hhhhhh.....eeeeeeee.eeeeeeee.........hhhhhhhhh Sec.struct. author
             SAPs(SNPs) (1) -------------------------------------------------------------------------------------------------------L--------------------------------------------------------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) -------------------------------------------------------------------------------------------------------L--------------------------------------------------------- SAPs(SNPs) (2)
                    PROSITE --THIOREDOXIN_2  PDB: D:3-161 UniProt: 56-214                                                                                                                     PROSITE
           Transcript 1 (1) 1.1 Exon 1.2  PDB: D:5-49 UniProt: 58-102        Exon 1.3  PDB: D:50-93 UniProt: 103-146     Exon 1.4     Exon 1.5             ---------------------------------- Transcript 1 (1)
           Transcript 1 (2) ------------------------------------------------------------------------------------------------------------------------------Exon 1.6  PDB: D:127-161            Transcript 1 (2)
                 1h4o D   1 APIKVGDAIPAVEVFEGEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKGVQVVACLSVNDAFVTGEWGRAHKAEGKVRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQDGIVKALNVEPDGTGLTCSLAPNIISQL 161
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160 

Chain E from PDB  Type:PROTEIN  Length:161
 aligned with PRDX5_HUMAN | P30044 from UniProtKB/Swiss-Prot  Length:214

    Alignment length:161
                                    63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213 
          PRDX5_HUMAN    54 APIKVGDAIPAVEVFEGEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKGVQVVACLSVNDAFVTGEWGRAHKAEGKVRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQDGIVKALNVEPDGTGLTCSLAPNIISQL 214
               SCOP domains d1h4oe_ E: Peroxiredoxin 5                                                                                                                                        SCOP domains
               CATH domains 1h4oE00 E:1-161 Glutaredoxin                                                                                                                                      CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eeeee....eeeehhhhh..eeeeeeee....hhhhhhhhhhhhhhhhhhhhh....eeeeee..hhhhhhhhhhhh......eeeee..hhhhhhhh......hhhhhh.....eeeeeeee.eeeeeeee.........hhhhhhhh. Sec.struct. author
             SAPs(SNPs) (1) -------------------------------------------------------------------------------------------------------L--------------------------------------------------------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) -------------------------------------------------------------------------------------------------------L--------------------------------------------------------- SAPs(SNPs) (2)
                    PROSITE --THIOREDOXIN_2  PDB: E:3-161 UniProt: 56-214                                                                                                                     PROSITE
           Transcript 1 (1) 1.1 Exon 1.2  PDB: E:5-49 UniProt: 58-102        Exon 1.3  PDB: E:50-93 UniProt: 103-146     Exon 1.4     Exon 1.5             ---------------------------------- Transcript 1 (1)
           Transcript 1 (2) ------------------------------------------------------------------------------------------------------------------------------Exon 1.6  PDB: E:127-161            Transcript 1 (2)
                 1h4o E   1 APIKVGDAIPAVEVFEGEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKGVQVVACLSVNDAFVTGEWGRAHKAEGKVRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQDGIVKALNVEPDGTGLTCSLAPNIISQL 161
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160 

Chain F from PDB  Type:PROTEIN  Length:161
 aligned with PRDX5_HUMAN | P30044 from UniProtKB/Swiss-Prot  Length:214

    Alignment length:161
                                    63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213 
          PRDX5_HUMAN    54 APIKVGDAIPAVEVFEGEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKGVQVVACLSVNDAFVTGEWGRAHKAEGKVRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQDGIVKALNVEPDGTGLTCSLAPNIISQL 214
               SCOP domains d1h4of_ F: Peroxiredoxin 5                                                                                                                                        SCOP domains
               CATH domains 1h4oF00 F:1-161 Glutaredoxin                                                                                                                                      CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eeeee....eeeehhhhh..eeeeeeee....hhhhhhhhhhhhhhhhhhhhh....eeeeee..hhhhhhhhhhhh......eeeee..hhhhhhhh......hhhhhh.....eeeeeeee.eeeeeeee.........hhhhhhhhh Sec.struct. author
             SAPs(SNPs) (1) -------------------------------------------------------------------------------------------------------L--------------------------------------------------------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) -------------------------------------------------------------------------------------------------------L--------------------------------------------------------- SAPs(SNPs) (2)
                    PROSITE --THIOREDOXIN_2  PDB: F:3-161 UniProt: 56-214                                                                                                                     PROSITE
           Transcript 1 (1) 1.1 Exon 1.2  PDB: F:5-49 UniProt: 58-102        Exon 1.3  PDB: F:50-93 UniProt: 103-146     Exon 1.4     Exon 1.5             ---------------------------------- Transcript 1 (1)
           Transcript 1 (2) ------------------------------------------------------------------------------------------------------------------------------Exon 1.6  PDB: F:127-161            Transcript 1 (2)
                 1h4o F   1 APIKVGDAIPAVEVFEGEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKGVQVVACLSVNDAFVTGEWGRAHKAEGKVRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQDGIVKALNVEPDGTGLTCSLAPNIISQL 161
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160 

Chain G from PDB  Type:PROTEIN  Length:161
 aligned with PRDX5_HUMAN | P30044 from UniProtKB/Swiss-Prot  Length:214

    Alignment length:161
                                    63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213 
          PRDX5_HUMAN    54 APIKVGDAIPAVEVFEGEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKGVQVVACLSVNDAFVTGEWGRAHKAEGKVRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQDGIVKALNVEPDGTGLTCSLAPNIISQL 214
               SCOP domains d1h4og_ G: Peroxiredoxin 5                                                                                                                                        SCOP domains
               CATH domains 1h4oG00 G:1-161 Glutaredoxin                                                                                                                                      CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eeeee....eeeehhhhhh.eeeeeeee....hhhhhhhhhhhhhhhhhhhhh....eeeeee..hhhhhhhhhhhh......eeeee..hhhhhhhh......hhhhhh.....eeeeeeee.eeeeeeee.........hhhhhhhhh Sec.struct. author
             SAPs(SNPs) (1) -------------------------------------------------------------------------------------------------------L--------------------------------------------------------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) -------------------------------------------------------------------------------------------------------L--------------------------------------------------------- SAPs(SNPs) (2)
                    PROSITE --THIOREDOXIN_2  PDB: G:3-161 UniProt: 56-214                                                                                                                     PROSITE
           Transcript 1 (1) 1.1 Exon 1.2  PDB: G:5-49 UniProt: 58-102        Exon 1.3  PDB: G:50-93 UniProt: 103-146     Exon 1.4     Exon 1.5             ---------------------------------- Transcript 1 (1)
           Transcript 1 (2) ------------------------------------------------------------------------------------------------------------------------------Exon 1.6  PDB: G:127-161            Transcript 1 (2)
                 1h4o G   1 APIKVGDAIPAVEVFEGEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKGVQVVACLSVNDAFVTGEWGRAHKAEGKVRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQDGIVKALNVEPDGTGLTCSLAPNIISQL 161
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160 

Chain H from PDB  Type:PROTEIN  Length:161
 aligned with PRDX5_HUMAN | P30044 from UniProtKB/Swiss-Prot  Length:214

    Alignment length:161
                                    63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213 
          PRDX5_HUMAN    54 APIKVGDAIPAVEVFEGEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKGVQVVACLSVNDAFVTGEWGRAHKAEGKVRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQDGIVKALNVEPDGTGLTCSLAPNIISQL 214
               SCOP domains d1h4oh_ H: Peroxiredoxin 5                                                                                                                                        SCOP domains
               CATH domains 1h4oH00 H:1-161 Glutaredoxin                                                                                                                                      CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eeeee....eeeehhhhh..eeeeeeee....hhhhhhhhhhhhhhhhhhhhh....eeeeee..hhhhhhhhhhhh......eeeee..hhhhhhhh......hhhhhh.....eeeeeeee.eeeeeeee.........hhhhhhhhh Sec.struct. author
             SAPs(SNPs) (1) -------------------------------------------------------------------------------------------------------L--------------------------------------------------------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) -------------------------------------------------------------------------------------------------------L--------------------------------------------------------- SAPs(SNPs) (2)
                    PROSITE --THIOREDOXIN_2  PDB: H:3-161 UniProt: 56-214                                                                                                                     PROSITE
           Transcript 1 (1) 1.1 Exon 1.2  PDB: H:5-49 UniProt: 58-102        Exon 1.3  PDB: H:50-93 UniProt: 103-146     Exon 1.4     Exon 1.5             ---------------------------------- Transcript 1 (1)
           Transcript 1 (2) ------------------------------------------------------------------------------------------------------------------------------Exon 1.6  PDB: H:127-161            Transcript 1 (2)
                 1h4o H   1 APIKVGDAIPAVEVFEGEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKGVQVVACLSVNDAFVTGEWGRAHKAEGKVRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQDGIVKALNVEPDGTGLTCSLAPNIISQL 161
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160 

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 8)

Asymmetric Unit

(-) CATH Domains  (1, 8)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)
1a1h4oA00A:1-161
1b1h4oB00B:1-161
1c1h4oC00C:1-161
1d1h4oD00D:1-161
1e1h4oE00E:1-161
1f1h4oF00F:1-161
1g1h4oG00G:1-161
1h1h4oH00H:1-161

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1H4O)

(-) Gene Ontology  (38, 38)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H   (PRDX5_HUMAN | P30044)
molecular function
    GO:0001016    RNA polymerase III regulatory region DNA binding    Interacting selectively and non-covalently with a DNA region that controls the transcription of a gene by RNA polymerase III. Binding may occur as a sequence specific interaction or as an interaction observed only once a factor has been recruited to the DNA by other factors.
    GO:0016209    antioxidant activity    Inhibition of the reactions brought about by dioxygen (O2) or peroxides. Usually the antioxidant is effective because it can itself be more easily oxidized than the substance protected. The term is often applied to components that can trap free radicals, thereby breaking the chain reaction that normally leads to extensive biological damage.
    GO:0043027    cysteine-type endopeptidase inhibitor activity involved in apoptotic process    Stops, prevents or reduces the activity of a cysteine-type endopeptidase involved in the apoptotic process.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0004601    peroxidase activity    Catalysis of the reaction: donor + hydrogen peroxide = oxidized donor + 2 H2O.
    GO:0051920    peroxiredoxin activity    Catalysis of the reaction: 2 R'-SH + ROOH = R'-S-S-R' + H2O + ROH.
    GO:0072541    peroxynitrite reductase activity    Catalysis of the reaction: 2 R-SH + ONOO- = R-SS-R + NO2- + H2O.
    GO:0046983    protein dimerization activity    The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits.
    GO:0005102    receptor binding    Interacting selectively and non-covalently with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function.
    GO:0008379    thioredoxin peroxidase activity    Catalysis of the reaction: thioredoxin + hydrogen peroxide = thioredoxin disulfide + H2O.
biological process
    GO:0070995    NADPH oxidation    A metabolic process that results in the oxidation of reduced nicotinamide adenine dinucleotide, NADPH, to the oxidized form, NADP.
    GO:0006915    apoptotic process    A programmed cell death process which begins when a cell receives an internal (e.g. DNA damage) or external signal (e.g. an extracellular death ligand), and proceeds through a series of biochemical events (signaling pathway phase) which trigger an execution phase. The execution phase is the last step of an apoptotic process, and is typically characterized by rounding-up of the cell, retraction of pseudopodes, reduction of cellular volume (pyknosis), chromatin condensation, nuclear fragmentation (karyorrhexis), plasma membrane blebbing and fragmentation of the cell into apoptotic bodies. When the execution phase is completed, the cell has died.
    GO:0098869    cellular oxidant detoxification    Any process carried out at the cellular level that reduces or removes the toxicity superoxide radicals or hydrogen peroxide.
    GO:0034614    cellular response to reactive oxygen species    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a reactive oxygen species stimulus. Reactive oxygen species include singlet oxygen, superoxide, and oxygen free radicals.
    GO:0042744    hydrogen peroxide catabolic process    The chemical reactions and pathways resulting in the breakdown of hydrogen peroxide (H2O2).
    GO:0006954    inflammatory response    The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages.
    GO:0043066    negative regulation of apoptotic process    Any process that stops, prevents, or reduces the frequency, rate or extent of cell death by apoptotic process.
    GO:0043154    negative regulation of cysteine-type endopeptidase activity involved in apoptotic process    Any process that stops, prevents, or reduces the frequency, rate or extent of a cysteine-type endopeptidase activity involved in the apoptotic process.
    GO:0051354    negative regulation of oxidoreductase activity    Any process that stops or reduces the rate of oxidoreductase activity, the catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered.
    GO:0016480    negative regulation of transcription from RNA polymerase III promoter    Any process that stops, prevents, or reduces the frequency, rate or extent of transcription from an RNA polymerase III promoter.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
    GO:0032967    positive regulation of collagen biosynthetic process    Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of collagen, any of a group of fibrous proteins of very high tensile strength that form the main component of connective tissue in animals.
    GO:2001057    reactive nitrogen species metabolic process    The chemical reactions and pathways involving a reactive nitrogen species.
    GO:0060785    regulation of apoptosis involved in tissue homeostasis    Any process that modulates the occurrence or rate of cell death by apoptosis that results in the maintenance of the steady-state number of cells within a tissue.
    GO:0006979    response to oxidative stress    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals.
    GO:0000302    response to reactive oxygen species    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a reactive oxygen species stimulus. Reactive oxygen species include singlet oxygen, superoxide, and oxygen free radicals.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0031410    cytoplasmic vesicle    A vesicle found in the cytoplasm of a cell.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0005615    extracellular space    That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid.
    GO:0043231    intracellular membrane-bounded organelle    Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane.
    GO:0005759    mitochondrial matrix    The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty acid oxidation.
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
    GO:0048471    perinuclear region of cytoplasm    Cytoplasm situated near, or occurring around, the nucleus.
    GO:0005782    peroxisomal matrix    The volume contained within the membranes of a peroxisome; in many cells the matrix contains a crystalloid core largely composed of urate oxidase.
    GO:0005777    peroxisome    A small organelle enclosed by a single membrane, and found in most eukaryotic cells. Contains peroxidases and other enzymes involved in a variety of metabolic processes including free radical detoxification, lipid catabolism and biosynthesis, and hydrogen peroxide metabolism.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PRDX5_HUMAN | P300441hd2 1oc3 1urm 2vl2 2vl3 2vl9 3mng 4k7i 4k7n 4k7o 4mmm

(-) Related Entries Specified in the PDB File

1hd2 HUMAN PEROXIREDOXIN 5