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Getting 'Biological Unit' information from database.
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Getting 'Exon' information from database.
1H4O
Asym. Unit
Info
Asym.Unit (223 KB)
Biol.Unit 1 (31 KB)
Biol.Unit 2 (30 KB)
Biol.Unit 3 (31 KB)
Biol.Unit 4 (32 KB)
Biol.Unit 5 (30 KB)
Biol.Unit 6 (31 KB)
Biol.Unit 7 (30 KB)
Biol.Unit 8 (30 KB)
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(1)
Title
:
MONOCLINIC FORM OF HUMAN PEROXIREDOXIN 5
Authors
:
J. P. Declercq, C. Evrard
Date
:
11 May 01 (Deposition) - 23 Oct 01 (Release) - 05 Feb 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.95
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: E (1x)
Biol. Unit 6: F (1x)
Biol. Unit 7: G (1x)
Biol. Unit 8: H (1x)
Keywords
:
Antioxidant Enzyme, Thioredoxin Perothioredoxin, Foldxidase, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. P. Declercq, C. Evrard, A. Clippe, D. V. Stricht, A. Bernard, B. Knoops
Crystal Structure Of Human Peroxiredoxin 5, A Novel Type Of Mammalian Peroxiredoxin At 1. 5 A Resolution
J. Mol. Biol. V. 311 751 2001
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(1, 8)
Info
All Hetero Components
1a: BENZOIC ACID (BEZa)
1b: BENZOIC ACID (BEZb)
1c: BENZOIC ACID (BEZc)
1d: BENZOIC ACID (BEZd)
1e: BENZOIC ACID (BEZe)
1f: BENZOIC ACID (BEZf)
1g: BENZOIC ACID (BEZg)
1h: BENZOIC ACID (BEZh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BEZ
8
Ligand/Ion
BENZOIC ACID
[
close Hetero Component info
]
Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
PRO A:40 , THR A:44 , PRO A:45 , GLY A:46 , CYS A:47 , ARG A:127 , ALA B:64
BINDING SITE FOR RESIDUE BEZ A1162
2
AC2
SOFTWARE
PRO B:40 , THR B:44 , PRO B:45 , GLY B:46 , CYS B:47 , ARG B:127 , ALA C:64 , HOH C:2092
BINDING SITE FOR RESIDUE BEZ B1162
3
AC3
SOFTWARE
THR C:44 , PRO C:45 , GLY C:46 , CYS C:47 , ARG C:127 , HOH C:2188 , LYS D:63 , ALA D:64 , GLY D:66
BINDING SITE FOR RESIDUE BEZ C1162
4
AC4
SOFTWARE
PRO D:40 , THR D:44 , PRO D:45 , GLY D:46 , CYS D:47 , ARG D:127 , HOH D:2184 , ALA E:64 , GLY E:66
BINDING SITE FOR RESIDUE BEZ D1162
5
AC5
SOFTWARE
THR E:44 , PRO E:45 , GLY E:46 , CYS E:47 , ARG E:127 , HOH E:2128 , LYS F:63 , ALA F:64 , GLY F:66
BINDING SITE FOR RESIDUE BEZ E1162
6
AC6
SOFTWARE
THR F:44 , PRO F:45 , GLY F:46 , CYS F:47 , ARG F:127 , HOH F:2160 , LYS G:63 , ALA G:64 , GLY G:66
BINDING SITE FOR RESIDUE BEZ F1162
7
AC7
SOFTWARE
THR G:44 , PRO G:45 , GLY G:46 , CYS G:47 , PHE G:120 , ARG G:127 , HOH G:2139 , ALA H:64
BINDING SITE FOR RESIDUE BEZ G1162
8
AC8
SOFTWARE
ALA A:64 , HOH A:2090 , PRO H:40 , THR H:44 , PRO H:45 , GLY H:46 , CYS H:47 , ARG H:127
BINDING SITE FOR RESIDUE BEZ H1162
[
close Site info
]
SAPs(SNPs)/Variants
(2, 16)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_036406 (F104L, chain A/B/C/D/E/F/G/H, )
2: VAR_PRDX5_HUMAN_CCDS8069_1_01 (F104L, chain A/B/C/D/E/F/G/H, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_036406
F
157
L
PRDX5_HUMAN
Unclassified
---
A/B/C/D/E/F/G/H
F
104
L
2
CancerSNP
VAR_PRDX5_HUMAN_CCDS8069_1_01
*
F
157
L
PRDX5_HUMAN
Disease (Breast cancer)
---
A/B/C/D/E/F/G/H
F
104
L
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 8)
Info
All PROSITE Patterns/Profiles
1: THIOREDOXIN_2 (A:3-161,B:3-161,C:3-161,D:3-161,E:...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
THIOREDOXIN_2
PS51352
Thioredoxin domain profile.
PRDX5_HUMAN
56-214
8
A:3-161
B:3-161
C:3-161
D:3-161
E:3-161
F:3-161
G:3-161
H:3-161
[
close PROSITE info
]
Exons
(6, 48)
Info
All Exons
Exon 1.1 (A:1-4 | B:1-4 | C:1-4 | D:1-4 | E:...)
Exon 1.2 (A:5-49 | B:5-49 | C:5-49 | D:5-49 ...)
Exon 1.3 (A:50-93 | B:50-93 | C:50-93 | D:50...)
Exon 1.4 (A:94-106 | B:94-106 | C:94-106 | D...)
Exon 1.5 (A:107-127 | B:107-127 | C:107-127 ...)
Exon 1.6 (A:127-161 | B:127-161 | C:127-161 ...)
View:
Select:
Label:
All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/1.2
3: Boundary 1.2/1.3
4: Boundary 1.3/1.4
5: Boundary 1.4/1.5
6: Boundary 1.5/1.6
7: Boundary 1.6/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000265462
1
ENSE00001265861
chr11:
64085569-64085858
290
PRDX5_HUMAN
1-57
57
8
A:1-4
B:1-4
C:1-4
D:1-4
E:1-4
F:1-4
G:1-4
H:1-4
4
4
4
4
4
4
4
4
1.2
ENST00000265462
2
ENSE00001317366
chr11:
64087206-64087340
135
PRDX5_HUMAN
58-102
45
8
A:5-49
B:5-49
C:5-49
D:5-49
E:5-49
F:5-49
G:5-49
H:5-49
45
45
45
45
45
45
45
45
1.3
ENST00000265462
3
ENSE00001291509
chr11:
64088133-64088264
132
PRDX5_HUMAN
103-146
44
8
A:50-93
B:50-93
C:50-93
D:50-93
E:50-93
F:50-93
G:50-93
H:50-93
44
44
44
44
44
44
44
44
1.4
ENST00000265462
4
ENSE00001313724
chr11:
64088337-64088375
39
PRDX5_HUMAN
147-159
13
8
A:94-106
B:94-106
C:94-106
D:94-106
E:94-106
F:94-106
G:94-106
H:94-106
13
13
13
13
13
13
13
13
1.5
ENST00000265462
5
ENSE00000992394
chr11:
64088479-64088540
62
PRDX5_HUMAN
160-180
21
8
A:107-127
B:107-127
C:107-127
D:107-127
E:107-127
F:107-127
G:107-127
H:107-127
21
21
21
21
21
21
21
21
1.6
ENST00000265462
6
ENSE00001195244
chr11:
64089058-64089282
225
PRDX5_HUMAN
180-214
35
8
A:127-161
B:127-161
C:127-161
D:127-161
E:127-161
F:127-161
G:127-161
H:127-161
35
35
35
35
35
35
35
35
[
close EXON info
]
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d1h4oa_ (A:)
1b: SCOP_d1h4ob_ (B:)
1c: SCOP_d1h4oc_ (C:)
1d: SCOP_d1h4od_ (D:)
1e: SCOP_d1h4oe_ (E:)
1f: SCOP_d1h4of_ (F:)
1g: SCOP_d1h4og_ (G:)
1h: SCOP_d1h4oh_ (H:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Thioredoxin fold
(994)
Superfamily
:
Thioredoxin-like
(992)
Family
:
Glutathione peroxidase-like
(136)
Protein domain
:
Peroxiredoxin 5
(4)
Human (Homo sapiens) [TaxId: 9606]
(4)
1a
d1h4oa_
A:
1b
d1h4ob_
B:
1c
d1h4oc_
C:
1d
d1h4od_
D:
1e
d1h4oe_
E:
1f
d1h4of_
F:
1g
d1h4og_
G:
1h
d1h4oh_
H:
[
close SCOP info
]
CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_1h4oA00 (A:1-161)
1b: CATH_1h4oB00 (B:1-161)
1c: CATH_1h4oC00 (C:1-161)
1d: CATH_1h4oD00 (D:1-161)
1e: CATH_1h4oE00 (E:1-161)
1f: CATH_1h4oF00 (F:1-161)
1g: CATH_1h4oG00 (G:1-161)
1h: CATH_1h4oH00 (H:1-161)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Glutaredoxin
(620)
Homologous Superfamily
:
Glutaredoxin
(617)
Human (Homo sapiens)
(186)
1a
1h4oA00
A:1-161
1b
1h4oB00
B:1-161
1c
1h4oC00
C:1-161
1d
1h4oD00
D:1-161
1e
1h4oE00
E:1-161
1f
1h4oF00
F:1-161
1g
1h4oG00
G:1-161
1h
1h4oH00
H:1-161
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
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]
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(currently selected atoms:
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Solvent
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Protein & NOT Variant
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Protein & NOT PROSITE
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Chain C
Chain D
Chain E
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Chain G
Chain H
Asymmetric Unit 1
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Asym.Unit (223 KB)
Header - Asym.Unit
Biol.Unit 1 (31 KB)
Header - Biol.Unit 1
Biol.Unit 2 (30 KB)
Header - Biol.Unit 2
Biol.Unit 3 (31 KB)
Header - Biol.Unit 3
Biol.Unit 4 (32 KB)
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Biol.Unit 5 (30 KB)
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