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(-) Description

Title :  FHUA IN COMPLEX WITH LIPOPOLYSACCHARIDE AND RIFAMYCIN CGP4832
 
Authors :  A. D. Ferguson, J. Koedding, C. Boes, G. Walker, J. W. Coulton, K. Dieder V. Braun, W. Welte
Date :  03 Aug 00  (Deposition) - 29 Aug 01  (Release) - 20 Jun 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.90
Chains :  Asym./Biol. Unit :  A
Keywords :  Outer Membrane Protein; Tonb-Dependent Receptor; Fhua; Siderophore Receptor; Integral Membrane Protein; Lipopolysaccharide; Rifamycin Cgp 4832; Beta-Barrel; Antibiotic, Metal Transport (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. D. Ferguson, J. Kodding, G. Walker, C. Bos, J. W. Coulton, K. Diederichs, V. Braun, W. Welte
Active Transport Of An Antibiotic Rifamycin Derivative By The Outer-Membrane Protein Fhua.
Structure V. 9 707 2001
PubMed-ID: 11587645  |  Reference-DOI: 10.1016/S0969-2126(01)00631-1
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - FERRICHROME-IRON RECEPTOR
    Cellular Location: OUTER MEMBRANE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector: PLASMID-ENCODED HEXAHISTIDINE-TAGGED FHUA
    Mutation: YES
    Organism Scientific: ESCHERICHIA COLI K12
    Organism Taxid: 83333
    Strain: K-12

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (14, 26)

Asymmetric/Biological Unit (14, 26)
No.NameCountTypeFull Name
1DDQ1Ligand/IonDECYLAMINE-N,N-DIMETHYL-N-OXIDE
2DPO2Ligand/IonDIPHOSPHATE
3FTT6Ligand/Ion3-HYDROXY-TETRADECANOIC ACID
4GCN1Ligand/Ion3-DEOXY-D-GLUCOSAMINE
5GLA1Ligand/IonALPHA D-GALACTOSE
6GLC3Ligand/IonALPHA-D-GLUCOSE
7GMH3Ligand/IonL-GLYCERO-D-MANNO-HEPTOPYRANOSE
8KDO2Ligand/Ion3-DEOXY-D-MANNO-OCT-2-ULOSONIC ACID
9MG1Ligand/IonMAGNESIUM ION
10NA1Ligand/IonSODIUM ION
11NI1Ligand/IonNICKEL (II) ION
12PA11Ligand/Ion2-AMINO-2-DEOXY-ALPHA-D-GLUCOPYRANOSE
13PO42Ligand/IonPHOSPHATE ION
14RIF1Ligand/IonRIFAMYCIN CGP 4832

(-) Sites  (26, 26)

Asymmetric Unit (26, 26)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREARG A:382 , GCN A:1001 , FTT A:1002 , FTT A:1003 , DPO A:1013BINDING SITE FOR RESIDUE PA1 A 1000
02AC2SOFTWAREGLN A:353 , PA1 A:1000 , FTT A:1004 , FTT A:1006 , KDO A:1008 , PO4 A:1014BINDING SITE FOR RESIDUE GCN A 1001
03AC3SOFTWAREPHE A:231 , TYR A:284 , PHE A:302 , ARG A:382 , GCN A:1001 , FTT A:1005 , FTT A:1006BINDING SITE FOR RESIDUE FTT A 1004
04AC4SOFTWARELYS A:351 , GLN A:353 , ARG A:384 , ASP A:386 , LEU A:437 , GCN A:1001 , KDO A:1009 , GMH A:1010 , GLC A:1018BINDING SITE FOR RESIDUE KDO A 1008
05AC5SOFTWAREARG A:384 , KDO A:1008 , GMH A:1010 , DPO A:1015 , GLC A:1018 , GLC A:1020 , HOH A:1160BINDING SITE FOR RESIDUE KDO A 1009
06AC6SOFTWAREARG A:474 , KDO A:1008 , KDO A:1009 , GMH A:1011 , DPO A:1015BINDING SITE FOR RESIDUE GMH A 1010
07AC7SOFTWAREGMH A:1010 , GMH A:1012 , DPO A:1015 , PO4 A:1016 , GLC A:1017BINDING SITE FOR RESIDUE GMH A 1011
08AC8SOFTWAREASP A:349 , ASN A:388 , ARG A:435 , GMH A:1011BINDING SITE FOR RESIDUE GMH A 1012
09AC9SOFTWARESER A:407 , GMH A:1011 , GLC A:1018 , GLA A:1019 , GLC A:1020BINDING SITE FOR RESIDUE GLC A 1017
10BC1SOFTWAREKDO A:1008 , KDO A:1009 , GLC A:1017 , GLC A:1020BINDING SITE FOR RESIDUE GLC A 1018
11BC2SOFTWAREGLC A:1017 , GLC A:1020BINDING SITE FOR RESIDUE GLA A 1019
12BC3SOFTWAREKDO A:1009 , GLC A:1017 , GLC A:1018 , GLA A:1019BINDING SITE FOR RESIDUE GLC A 1020
13BC4SOFTWAREGLU A:304 , LYS A:351 , GLN A:353 , GCN A:1001 , FTT A:1006BINDING SITE FOR RESIDUE PO4 A 1014
14BC5SOFTWARESER A:407 , HIS A:408 , HIS A:411 , HIS A:412 , GMH A:1011 , NI A:1021BINDING SITE FOR RESIDUE PO4 A 1016
15BC6SOFTWAREHIS A:411 , HIS A:412 , PO4 A:1016BINDING SITE FOR RESIDUE NI A 1021
16BC7SOFTWARELEU A:457 , VAL A:458 , THR A:459 , GLY A:492 , VAL A:493 , ASN A:494BINDING SITE FOR RESIDUE NA A 1024
17BC8SOFTWAREASP A:484 , LYS A:485 , GLN A:486BINDING SITE FOR RESIDUE MG A 1025
18BC9SOFTWAREGLN A:298 , PHE A:380 , ARG A:382 , PA1 A:1000 , FTT A:1003 , FTT A:1005 , DPO A:1013 , DDQ A:1023BINDING SITE FOR RESIDUE FTT A 1002
19CC1SOFTWAREPA1 A:1000 , FTT A:1002BINDING SITE FOR RESIDUE FTT A 1003
20CC2SOFTWARETYR A:284 , PHE A:355 , ARG A:382 , FTT A:1002 , FTT A:1004BINDING SITE FOR RESIDUE FTT A 1005
21CC3SOFTWAREPHE A:231 , PHE A:302 , GLU A:304 , GCN A:1001 , FTT A:1004 , FTT A:1007 , PO4 A:1014BINDING SITE FOR RESIDUE FTT A 1006
22CC4SOFTWAREPRO A:217 , GLU A:304 , FTT A:1006BINDING SITE FOR RESIDUE FTT A 1007
23CC5SOFTWARELYS A:439 , LYS A:441 , PA1 A:1000 , FTT A:1002 , HOH A:1191BINDING SITE FOR RESIDUE DPO A 1013
24CC6SOFTWARELYS A:260 , KDO A:1009 , GMH A:1010 , GMH A:1011BINDING SITE FOR RESIDUE DPO A 1015
25CC7SOFTWAREGLY A:99 , GLN A:100 , SER A:101 , PHE A:115 , TYR A:116 , TYR A:244 , TRP A:246 , TYR A:313 , TYR A:315 , LYS A:344 , PHE A:391 , GLY A:392 , TYR A:434 , GLN A:516 , PHE A:704 , TYR A:707 , HOH A:1149BINDING SITE FOR RESIDUE RIF A 1022
26CC8SOFTWAREGLN A:298 , THR A:359 , PHE A:380 , THR A:443 , FTT A:1002BINDING SITE FOR RESIDUE DDQ A 1023

(-) SS Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1A:318 -A:329
2A:703 -A:709

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1FI1)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1FI1)

(-) PROSITE Motifs  (1, 1)

Asymmetric/Biological Unit (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1TONB_DEPENDENT_REC_2PS01156 TonB-dependent receptor proteins signature 2.FHUA_ECOLI730-747  1A:708-725

(-) Exons   (0, 0)

(no "Exon" information available for 1FI1)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:707
 aligned with FHUA_ECOLI | P06971 from UniProtKB/Swiss-Prot  Length:747

    Alignment length:707
                                                                                                                                                                                                                                                                                                                                                                                                                            438         439                                                                                                                                                                                                                                                                                                                    
                                    61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431      |  -       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730       740       
           FHUA_ECOLI    52 ESAWGPAATIAARQSATGTKTDTPIQKVPQSISVVTAEEMALHQPKSVKEALSYTPGVSVGTRGASNTYDHLIIRGFAAEGQSQNNYLNGLKLQGNFYNDAVIDPYMLERAEIMRGPVSVLYGKSSPGGLLNMVSKRPTTEPLKEVQFKAGTDSLFQTGFDFSDSLDDDGVYSYRLTGLARSANAQQKGSEEQRYAIAPAFTWRPDDKTNFTFLSYFQNEPETGYYGWLPKEGTVEPLPNGKRLPTDFNEGAKNNTYSRNEKMVGYSFDHEFNDTFTVRQNLRFAENKTSQNSVYGYGVCSDPANAYSKQCAALAPADKGHYLARKYVVDDEKLQNFSVDTQLQSKFATGDIDHTLLTGVDFMRMRNDINAWFGYDDSVPLLNLYNP-----------VNTDFDFNAKDPANSGPYRILNKQKQTGVYVQDQAQWDKVLVTLGGRYDWADQESLNRVAGTTDKRDDKQFTWRGGVNYLFDNGVTPYFSYSESFEPSSQVGKDGNIFAPSKGKQYEVGVKYVPEDRPIVVTGAVYNLTKTNNLMADPEGSFFSVEGGEIRARGVEIEAKAALSASVNVVGSYTYTDAEYTTDTTYKGNTPAQVPKHMASLWADYTFFDGPLSGLTLGTGGRYTGSSYGDPANSFKVGSYTVVDALVRYDLARVGMAGSNVALHVNNLFDREYVASCFNTYGCFWGAERQVVATATFRF 747
               SCOP domains d1fi1a_ A: Ferric hydroxamate uptake receptor FhuA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  SCOP domains
               CATH domains 1fi1A01 A:19-160 Ferric Hydroxamate Uptake Protein; Chain A, domain 1                                                                         1fi1A02 A:161-725  [code=2.40.170.20, no name defined]                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhh.ee.......ee.hhh...eeeeehhhhhhhh..hhhhhh.....ee.............ee....hhhhh..eee..ee...........hhh.eeeeeeee..hhhhhh.....eeeeeee.......eeeeeeeee...eeeeeeeeeee......eeeeeeeeeeeee......eeeeeeeeeeeee.....eeeeeeeeeeee...................................eeeeeeeeeeeeeeee....eeeeeeeeeeeeeeeeeeeeeeee..hhhhh.hhhhhh....hhh.eeeeeeeeeeeeeeeeeeeeeeeeeee....eeeeeeeeeeeeeeeeeeeeeeeeeeeeeee.............................eeeeeeeeeeeeeeeeeeeeee....eeeeeeeeeeeeeeeee....eeeeeeeeeeeeeeeee......eeeeeeeeeeee..............eeeeeeeeeeee......eeeeeeeeeeeeeeeeee.......eeeeeeeeeeeeeeeeeee....eeeeeeeeeeeeeeee..............eeeeeeeeee........eeeeeeeeee..ee.......ee..eeeeeeeeee.hhhhh....eeeeeee.......eeee.....eee....eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TONB_DEPENDENT_REC PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1fi1 A  19 ESAWGPAATIAARQSATGTKTDTPIQKVPQSISVVTAEEMALHQPKSVKEALSYTPGVSVGTRGASNTYDHLIIRGFAAEGQSQNNYLNGLKLQGNFYNDAVIDPYMLERAEIMRGPVSVLYGKSSPGGLLNMVSKRPTTEPLKEVQFKAGTDSLFQTGFDFSDSLDDDGVYSYRLTGLARSANAQQKGSEEQRYAIAPAFTWRPDDKTNFTFLSYFQNEPETGYYGWLPKEGTVEPLPNGKRLPTDFNEGAKNNTYSRNEKMVGYSFDHEFNDTFTVRQNLRFAENKTSQNSVYGYGVCSDPANAYSKQCAALAPADKGHYLARKYVVDDEKLQNFSVDTQLQSKFATGDIDHTLLTGVDFMRMRNDINAWFGYDDSVPLLNLYNPSSHHHHHHGSSVNTDFDFNAKDPANSGPYRILNKQKQTGVYVQDQAQWDKVLVTLGGRYDWADQESLNRVAGTTDKRDDKQFTWRGGVNYLFDNGVTPYFSYSESFEPSSQVGKDGNIFAPSKGKQYEVGVKYVPEDRPIVVTGAVYNLTKTNNLMADPEGSFFSVEGGEIRARGVEIEAKAALSASVNVVGSYTYTDAEYTTDTTYKGNTPAQVPKHMASLWADYTFFDGPLSGLTLGTGGRYTGSSYGDPANSFKVGSYTVVDALVRYDLARVGMAGSNVALHVNNLFDREYVASCFNTYGCFWGAERQVVATATFRF 725
                                    28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498       508       518       528       538       548       558       568       578       588       598       608       618       628       638       648       658       668       678       688       698       708       718
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Membrane and cell surface proteins and peptides (2046)

(-) CATH Domains  (2, 2)

Asymmetric/Biological Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1FI1)

(-) Gene Ontology  (14, 14)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (FHUA_ECOLI | P06971)
molecular function
    GO:0048037    cofactor binding    Interacting selectively and non-covalently with a cofactor, a substance that is required for the activity of an enzyme or other protein. Cofactors may be inorganic, such as the metal atoms zinc, iron, and copper in certain forms, or organic, in which case they are referred to as coenzymes. Cofactors may either be bound tightly to active sites or bind loosely with the substrate.
    GO:0005506    iron ion binding    Interacting selectively and non-covalently with iron (Fe) ions.
    GO:0004872    receptor activity    Combining with an extracellular or intracellular messenger to initiate a change in cell activity.
    GO:0015344    siderophore uptake transmembrane transporter activity    Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: siderophore-iron(ferrioxamine)(out) + H+(out) = siderophore-iron(ferrioxamine)(in) + H+(in).
    GO:0015643    toxic substance binding    Interacting selectively and non-covalently with a toxic substance, a poisonous substance that causes damage to biological systems.
    GO:0046790    virion binding    Interacting selectively and non-covalently with a virion, either by binding to components of the capsid or the viral envelope.
biological process
    GO:0006811    ion transport    The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0055072    iron ion homeostasis    Any process involved in the maintenance of an internal steady state of iron ions within an organism or cell.
    GO:0044718    siderophore transmembrane transport    The directed movement of siderophores, low molecular weight Fe(III)-chelating substances, from one side of a membrane to the other, by means of some agent such as a transporter or pore.
    GO:0015891    siderophore transport    The directed movement of siderophores, low molecular weight Fe(III)-chelating substances, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
    GO:0009279    cell outer membrane    A lipid bilayer that forms the outermost membrane of the cell envelope; enriched in polysaccharide and protein; the outer leaflet of the membrane contains specific lipopolysaccharide structures.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

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  1fi1
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  FHUA_ECOLI | P06971
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FHUA_ECOLI | P06971: 1by3 1by5 1fcp 1qff 1qfg 1qjq 1qkc 2fcp 2grx 4cu4

(-) Related Entries Specified in the PDB File

1fcp FHUA IN COMPLEX WITH LIPOPOLYSACCCHARIDE AND FERRICROCIN
1qff FHUA IN COMPLEX WITH LIPOPOLYSACCHARIDE AND FERRICROCIN
1qfg FHUA IN COMPLEX WITH LIPOPOLYSACCHARIDE
1qjq FHUA IN COMPLEX WITH LIPOPOLYSACCHARIDE AND PHENYLFERRICROCIN
1qkc FHUA IN COMPLEX WITH LIPOPOLYSACCHARIDE AND ALBOMYCIN
2fcp FHUA IN COMPLEX WITH LIPOPOLYSACCHARIDE