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(-) Description

Title :  ESCHERICHIA COLI FERRIC HYDROXAMATE UPTAKE RECEPTOR (FHUA) IN COMPLEX DELTA TWO-ALBOMYCIN
 
Authors :  A. D. Ferguson, V. Braun, H. -P. Fiedler, J. W. Coulton, K. Diederichs, W. Welte
Date :  18 Jul 99  (Deposition) - 05 Jun 00  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.10
Chains :  Asym./Biol. Unit :  A
Keywords :  Tonb Dependent Receptor, Tonb-Dependent Receptor, Integral Outer Membrane Protein, Ferrichrome, Siderophore Receptor, Antibiotic, Albomycin, Active Transporter, Iron Transport Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. D. Ferguson, V. Braun, H. -P. Fiedler, J. W. Coulton, K. Diederichs, W. Welte
Crystal Structure Of The Antibiotic Albomycin In Complex With The Outer Membrane Protein Fhua
Protein Sci. V. 9 956 2000
PubMed-ID: 10850805
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - FERRIC HYDROXAMATE RECEPTOR
    Cell: BACTERIAL
    Cellular Location: OUTER MEMBRANE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Cell: BACTERIAL
    Expression System Cellular Location: CYTOPLASM
    Expression System Gene: FHUA405.H6
    Expression System Plasmid: PHX405
    Expression System Strain: AW740
    Expression System Taxid: 562
    Expression System Variant: K-12 RA-CHEMOTYPE
    Gene: FHUA
    Mutation: YES
    Organism Common: E. COLI
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 562
    Other Details: A HEXAHISTIDINE TAG PLUS FIVE ADDITIONAL LINKER RESIDUES HAVE BEEN GENETICALLY INSERTED AFTER RESIDUE 405 OF THE MATURE FHUA SEQUENCE AS AN AFFINITY TAG
    Plasmid: PHX405
    Strain: AW740
    Synonym: FHUA
    Variant: K-12 RA-CHEMOTYPE

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (11, 23)

Asymmetric/Biological Unit (11, 23)
No.NameCountTypeFull Name
1ALB1Ligand/IonDELTA-2-ALBOMYCIN A1
2DPO2Ligand/IonDIPHOSPHATE
3FTT6Ligand/Ion3-HYDROXY-TETRADECANOIC ACID
4GCN1Ligand/Ion3-DEOXY-D-GLUCOSAMINE
5GLA1Ligand/IonALPHA D-GALACTOSE
6GLC3Ligand/IonALPHA-D-GLUCOSE
7GMH3Ligand/IonL-GLYCERO-D-MANNO-HEPTOPYRANOSE
8KDO2Ligand/Ion3-DEOXY-D-MANNO-OCT-2-ULOSONIC ACID
9NI1Ligand/IonNICKEL (II) ION
10PA11Ligand/IonPAROMOMYCIN (RING 1)
11PO42Ligand/IonPHOSPHATE ION

(-) Sites  (23, 23)

Asymmetric Unit (23, 23)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREARG A:382 , GCN A:1001 , FTT A:1002 , FTT A:1003 , FTT A:1004 , DPO A:1013 , HOH A:2199 , HOH A:2322BINDING SITE FOR RESIDUE PA1 A1000
02AC2SOFTWAREPA1 A:1000 , FTT A:1004 , FTT A:1006 , KDO A:1008 , PO4 A:1014BINDING SITE FOR RESIDUE GCN A1001
03AC3SOFTWAREPHE A:231 , GLY A:283 , TYR A:284 , ARG A:382 , PA1 A:1000 , GCN A:1001 , FTT A:1003 , FTT A:1005 , FTT A:1006BINDING SITE FOR RESIDUE FTT A1004
04AC4SOFTWARELYS A:351 , GLN A:353 , ARG A:384 , ASP A:386 , GCN A:1001 , KDO A:1009 , GMH A:1010 , GLC A:1018BINDING SITE FOR RESIDUE KDO A1008
05AC5SOFTWAREARG A:384 , KDO A:1008 , GMH A:1010 , DPO A:1015 , GLC A:1018 , GLC A:1020 , HOH A:2323 , HOH A:2325BINDING SITE FOR RESIDUE KDO A1009
06AC6SOFTWAREARG A:474 , KDO A:1008 , KDO A:1009 , GMH A:1011 , DPO A:1015BINDING SITE FOR RESIDUE GMH A1010
07AC7SOFTWAREGMH A:1010 , GMH A:1012 , DPO A:1015 , PO4 A:1016 , GLC A:1017BINDING SITE FOR RESIDUE GMH A1011
08AC8SOFTWAREASN A:388 , ARG A:435 , GMH A:1011 , HOH A:2219BINDING SITE FOR RESIDUE GMH A1012
09AC9SOFTWARESER A:407 , GMH A:1011 , GLC A:1018 , GLA A:1019 , GLC A:1020 , NI A:1021 , HOH A:2329BINDING SITE FOR RESIDUE GLC A1017
10BC1SOFTWAREKDO A:1008 , KDO A:1009 , GLC A:1017 , GLC A:1020BINDING SITE FOR RESIDUE GLC A1018
11BC2SOFTWAREHIS A:411 , GLC A:1017 , GLC A:1020 , HOH A:2329BINDING SITE FOR RESIDUE GLA A1019
12BC3SOFTWAREKDO A:1009 , GLC A:1017 , GLC A:1018 , GLA A:1019BINDING SITE FOR RESIDUE GLC A1020
13BC4SOFTWAREGLU A:304 , LYS A:351 , GCN A:1001 , FTT A:1006BINDING SITE FOR RESIDUE PO4 A1014
14BC5SOFTWAREHIS A:408 , HIS A:412 , GMH A:1011 , NI A:1021 , HOH A:2210BINDING SITE FOR RESIDUE PO4 A1016
15BC6SOFTWARESER A:407 , HIS A:411 , HIS A:412 , PO4 A:1016 , GLC A:1017BINDING SITE FOR RESIDUE NI A1021
16BC7SOFTWARETYR A:284 , PHE A:380 , ARG A:382 , PA1 A:1000 , FTT A:1003 , FTT A:1005 , DPO A:1013BINDING SITE FOR RESIDUE FTT A1002
17BC8SOFTWAREPA1 A:1000 , FTT A:1002 , FTT A:1004BINDING SITE FOR RESIDUE FTT A1003
18BC9SOFTWARETYR A:284 , ARG A:382 , FTT A:1002 , FTT A:1004BINDING SITE FOR RESIDUE FTT A1005
19CC1SOFTWAREPHE A:231 , VAL A:282 , PHE A:302 , GLU A:304 , GCN A:1001 , FTT A:1004 , FTT A:1007 , PO4 A:1014BINDING SITE FOR RESIDUE FTT A1006
20CC2SOFTWAREPHE A:235 , FTT A:1006BINDING SITE FOR RESIDUE FTT A1007
21CC3SOFTWARELYS A:439 , LYS A:441 , PA1 A:1000 , FTT A:1002 , HOH A:2201 , HOH A:2326BINDING SITE FOR RESIDUE DPO A1013
22CC4SOFTWARELYS A:260 , KDO A:1009 , GMH A:1010 , GMH A:1011BINDING SITE FOR RESIDUE DPO A1015
23CC5SOFTWAREARG A:81 , GLY A:99 , GLN A:100 , PHE A:115 , TYR A:116 , TYR A:244 , TRP A:246 , TYR A:313 , TYR A:315 , LYS A:344 , PHE A:391 , TYR A:393 , TYR A:434 , GLN A:516 , PHE A:568 , PHE A:569 , PHE A:704 , HOH A:2330 , HOH A:2331 , HOH A:2332BINDING SITE FOR RESIDUE ALB A1022

(-) SS Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1A:318 -A:329
2A:703 -A:709

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1QKC)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1QKC)

(-) PROSITE Motifs  (1, 1)

Asymmetric/Biological Unit (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1TONB_DEPENDENT_REC_2PS01156 TonB-dependent receptor proteins signature 2.FHUA_ECOLI730-747  1A:708-725

(-) Exons   (0, 0)

(no "Exon" information available for 1QKC)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:707
 aligned with FHUA_ECOLI | P06971 from UniProtKB/Swiss-Prot  Length:747

    Alignment length:707
                                                                                                                                                                                                                                                                                                                                                                                                                            438         439                                                                                                                                                                                                                                                                                                                    
                                    61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431      |  -       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730       740       
           FHUA_ECOLI    52 ESAWGPAATIAARQSATGTKTDTPIQKVPQSISVVTAEEMALHQPKSVKEALSYTPGVSVGTRGASNTYDHLIIRGFAAEGQSQNNYLNGLKLQGNFYNDAVIDPYMLERAEIMRGPVSVLYGKSSPGGLLNMVSKRPTTEPLKEVQFKAGTDSLFQTGFDFSDSLDDDGVYSYRLTGLARSANAQQKGSEEQRYAIAPAFTWRPDDKTNFTFLSYFQNEPETGYYGWLPKEGTVEPLPNGKRLPTDFNEGAKNNTYSRNEKMVGYSFDHEFNDTFTVRQNLRFAENKTSQNSVYGYGVCSDPANAYSKQCAALAPADKGHYLARKYVVDDEKLQNFSVDTQLQSKFATGDIDHTLLTGVDFMRMRNDINAWFGYDDSVPLLNLYNP-----------VNTDFDFNAKDPANSGPYRILNKQKQTGVYVQDQAQWDKVLVTLGGRYDWADQESLNRVAGTTDKRDDKQFTWRGGVNYLFDNGVTPYFSYSESFEPSSQVGKDGNIFAPSKGKQYEVGVKYVPEDRPIVVTGAVYNLTKTNNLMADPEGSFFSVEGGEIRARGVEIEAKAALSASVNVVGSYTYTDAEYTTDTTYKGNTPAQVPKHMASLWADYTFFDGPLSGLTLGTGGRYTGSSYGDPANSFKVGSYTVVDALVRYDLARVGMAGSNVALHVNNLFDREYVASCFNTYGCFWGAERQVVATATFRF 747
               SCOP domains d1qkca_ A: Ferric hydroxamate uptake receptor FhuA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  SCOP domains
               CATH domains 1qkcA01 A:19-160 Ferric Hydroxamate Uptake Protein; Chain A, domain 1                                                                         1qkcA02 A:161-725  [code=2.40.170.20, no name defined]                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                CATH domains
               Pfam domains -----------------------Plug-1qkcA02 A:42-148                                                                                      ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TonB_dep_Rec-1qkcA01 A:488-724                                                                                                                                                                                                               - Pfam domains
         Sec.struct. author .........................hhh...eeeehhhhhhhhh..................................hhhhh..eee...............hhh.eeeeeee...hhhhhh......eeeeee.......eeeeee.......eeeeeeee........eeeeeeeeeeeee......eeeeeeeeeeeee.....eeeeeeeeeeee...................................eeeeeeeeeeeeeeee....eeeeeeeeeeeeeeeeeeeeeeee..hhhhhhh.........hhh..eeeeeeeeeeeeeeeeeeeeeeeeeee..eeeeeeeeeeeeeeeeeeeeeee......................................eeeeeeeeeeeeeeeeeeeeee...eeeeeeeeeeeeeeeeee....eeeeeeeeeeeeeeeeeee....eeeeeeeeeeee..............eeeeeeeeeeee.......eeeeeeeeeeee.eeee.......eeeeeeeeeeeeeeeeee.....eeeeeeeeeeeeeeee..............eeeeeeeeeee.......eeeeeeeeee...............eeeeeeeeeee.hhhh....eeeeeee.......eeee.....eee....eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TONB_DEPENDENT_REC PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1qkc A  19 ESAWGPAATIAARQSATGTKTDTPIQKVPQSISVVTAEEMALHQPKSVKEALSYTPGVSVGTRGASNTYDHLIIRGFAAEGQSQNNYLNGLKLQGNFYNDAVIDPYMLERAEIMRGPVSVLYGKSSPGGLLNMVSKRPTTEPLKEVQFKAGTDSLFQTGFDFSDSLDDDGVYSYRLTGLARSANAQQKGSEEQRYAIAPAFTWRPDDKTNFTFLSYFQNEPETGYYGWLPKEGTVEPLPNGKRLPTDFNEGAKNNTYSRNEKMVGYSFDHEFNDTFTVRQNLRFAENKTSQNSVYGYGVCSDPANAYSKQCAALAPADKGHYLARKYVVDDEKLQNFSVDTQLQSKFATGDIDHTLLTGVDFMRMRNDINAWFGYDDSVPLLNLYNPSSHHHHHHGSSVNTDFDFNAKDPANSGPYRILNKQKQTGVYVQDQAQWDKVLVTLGGRYDWADQESLNRVAGTTDKRDDKQFTWRGGVNYLFDNGVTPYFSYSESFEPSSQVGKDGNIFAPSKGKQYEVGVKYVPEDRPIVVTGAVYNLTKTNNLMADPEGSFFSVEGGEIRARGVEIEAKAALSASVNVVGSYTYTDAEYTTDTTYKGNTPAQVPKHMASLWADYTFFDGPLSGLTLGTGGRYTGSSYGDPANSFKVGSYTVVDALVRYDLARVGMAGSNVALHVNNLFDREYVASCFNTYGCFWGAERQVVATATFRF 725
                                    28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498       508       518       528       538       548       558       568       578       588       598       608       618       628       638       648       658       668       678       688       698       708       718
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Membrane and cell surface proteins and peptides (2046)

(-) CATH Domains  (2, 2)

Asymmetric/Biological Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (2, 2)

Asymmetric/Biological Unit
(-)
Clan: MBB (97)
(-)
Clan: Ubiquitin (279)

(-) Gene Ontology  (14, 14)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (FHUA_ECOLI | P06971)
molecular function
    GO:0048037    cofactor binding    Interacting selectively and non-covalently with a cofactor, a substance that is required for the activity of an enzyme or other protein. Cofactors may be inorganic, such as the metal atoms zinc, iron, and copper in certain forms, or organic, in which case they are referred to as coenzymes. Cofactors may either be bound tightly to active sites or bind loosely with the substrate.
    GO:0005506    iron ion binding    Interacting selectively and non-covalently with iron (Fe) ions.
    GO:0004872    receptor activity    Combining with an extracellular or intracellular messenger to initiate a change in cell activity.
    GO:0015344    siderophore uptake transmembrane transporter activity    Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: siderophore-iron(ferrioxamine)(out) + H+(out) = siderophore-iron(ferrioxamine)(in) + H+(in).
    GO:0015643    toxic substance binding    Interacting selectively and non-covalently with a toxic substance, a poisonous substance that causes damage to biological systems.
    GO:0046790    virion binding    Interacting selectively and non-covalently with a virion, either by binding to components of the capsid or the viral envelope.
biological process
    GO:0006811    ion transport    The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0055072    iron ion homeostasis    Any process involved in the maintenance of an internal steady state of iron ions within an organism or cell.
    GO:0044718    siderophore transmembrane transport    The directed movement of siderophores, low molecular weight Fe(III)-chelating substances, from one side of a membrane to the other, by means of some agent such as a transporter or pore.
    GO:0015891    siderophore transport    The directed movement of siderophores, low molecular weight Fe(III)-chelating substances, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
    GO:0009279    cell outer membrane    A lipid bilayer that forms the outermost membrane of the cell envelope; enriched in polysaccharide and protein; the outer leaflet of the membrane contains specific lipopolysaccharide structures.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

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  1qkc
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  FHUA_ECOLI | P06971
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FHUA_ECOLI | P06971: 1by3 1by5 1fcp 1fi1 1qff 1qfg 1qjq 2fcp 2grx 4cu4

(-) Related Entries Specified in the PDB File

1by3 1by5 1fcp 1qff 1qfg 1qjq 2fcp