PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
1FI1
Asym. Unit
Info
Asym.Unit (134 KB)
Biol.Unit 1 (126 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
FHUA IN COMPLEX WITH LIPOPOLYSACCHARIDE AND RIFAMYCIN CGP4832
Authors
:
A. D. Ferguson, J. Koedding, C. Boes, G. Walker, J. W. Coulton, K. Dieder V. Braun, W. Welte
Date
:
03 Aug 00 (Deposition) - 29 Aug 01 (Release) - 20 Jun 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.90
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Outer Membrane Protein; Tonb-Dependent Receptor; Fhua; Siderophore Receptor; Integral Membrane Protein; Lipopolysaccharide; Rifamycin Cgp 4832; Beta-Barrel; Antibiotic, Metal Transport
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. D. Ferguson, J. Kodding, G. Walker, C. Bos, J. W. Coulton, K. Diederichs, V. Braun, W. Welte
Active Transport Of An Antibiotic Rifamycin Derivative By The Outer-Membrane Protein Fhua.
Structure V. 9 707 2001
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(14, 26)
Info
All Hetero Components
01a: DECYLAMINE-N,N-DIMETHYL-N-OXIDE (DDQa)
02a: DIPHOSPHATE (DPOa)
02b: DIPHOSPHATE (DPOb)
03a: 3-HYDROXY-TETRADECANOIC ACID (FTTa)
03b: 3-HYDROXY-TETRADECANOIC ACID (FTTb)
03c: 3-HYDROXY-TETRADECANOIC ACID (FTTc)
03d: 3-HYDROXY-TETRADECANOIC ACID (FTTd)
03e: 3-HYDROXY-TETRADECANOIC ACID (FTTe)
03f: 3-HYDROXY-TETRADECANOIC ACID (FTTf)
04a: 3-DEOXY-D-GLUCOSAMINE (GCNa)
05a: ALPHA D-GALACTOSE (GLAa)
06a: ALPHA-D-GLUCOSE (GLCa)
06b: ALPHA-D-GLUCOSE (GLCb)
06c: ALPHA-D-GLUCOSE (GLCc)
07a: L-GLYCERO-D-MANNO-HEPTOPYRANOSE (GMHa)
07b: L-GLYCERO-D-MANNO-HEPTOPYRANOSE (GMHb)
07c: L-GLYCERO-D-MANNO-HEPTOPYRANOSE (GMHc)
08a: 3-DEOXY-D-MANNO-OCT-2-ULOSONIC ACI... (KDOa)
08b: 3-DEOXY-D-MANNO-OCT-2-ULOSONIC ACI... (KDOb)
09a: MAGNESIUM ION (MGa)
10a: SODIUM ION (NAa)
11a: NICKEL (II) ION (NIa)
12a: 2-AMINO-2-DEOXY-ALPHA-D-GLUCOPYRAN... (PA1a)
13a: PHOSPHATE ION (PO4a)
13b: PHOSPHATE ION (PO4b)
14a: RIFAMYCIN CGP 4832 (RIFa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
DDQ
1
Ligand/Ion
DECYLAMINE-N,N-DIMETHYL-N-OXIDE
2
DPO
2
Ligand/Ion
DIPHOSPHATE
3
FTT
6
Ligand/Ion
3-HYDROXY-TETRADECANOIC ACID
4
GCN
1
Ligand/Ion
3-DEOXY-D-GLUCOSAMINE
5
GLA
1
Ligand/Ion
ALPHA D-GALACTOSE
6
GLC
3
Ligand/Ion
ALPHA-D-GLUCOSE
7
GMH
3
Ligand/Ion
L-GLYCERO-D-MANNO-HEPTOPYRANOSE
8
KDO
2
Ligand/Ion
3-DEOXY-D-MANNO-OCT-2-ULOSONIC ACID
9
MG
1
Ligand/Ion
MAGNESIUM ION
10
NA
1
Ligand/Ion
SODIUM ION
11
NI
1
Ligand/Ion
NICKEL (II) ION
12
PA1
1
Ligand/Ion
2-AMINO-2-DEOXY-ALPHA-D-GLUCOPYRANOSE
13
PO4
2
Ligand/Ion
PHOSPHATE ION
14
RIF
1
Ligand/Ion
RIFAMYCIN CGP 4832
[
close Hetero Component info
]
Sites
(26, 26)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:382 , GCN A:1001 , FTT A:1002 , FTT A:1003 , DPO A:1013
BINDING SITE FOR RESIDUE PA1 A 1000
02
AC2
SOFTWARE
GLN A:353 , PA1 A:1000 , FTT A:1004 , FTT A:1006 , KDO A:1008 , PO4 A:1014
BINDING SITE FOR RESIDUE GCN A 1001
03
AC3
SOFTWARE
PHE A:231 , TYR A:284 , PHE A:302 , ARG A:382 , GCN A:1001 , FTT A:1005 , FTT A:1006
BINDING SITE FOR RESIDUE FTT A 1004
04
AC4
SOFTWARE
LYS A:351 , GLN A:353 , ARG A:384 , ASP A:386 , LEU A:437 , GCN A:1001 , KDO A:1009 , GMH A:1010 , GLC A:1018
BINDING SITE FOR RESIDUE KDO A 1008
05
AC5
SOFTWARE
ARG A:384 , KDO A:1008 , GMH A:1010 , DPO A:1015 , GLC A:1018 , GLC A:1020 , HOH A:1160
BINDING SITE FOR RESIDUE KDO A 1009
06
AC6
SOFTWARE
ARG A:474 , KDO A:1008 , KDO A:1009 , GMH A:1011 , DPO A:1015
BINDING SITE FOR RESIDUE GMH A 1010
07
AC7
SOFTWARE
GMH A:1010 , GMH A:1012 , DPO A:1015 , PO4 A:1016 , GLC A:1017
BINDING SITE FOR RESIDUE GMH A 1011
08
AC8
SOFTWARE
ASP A:349 , ASN A:388 , ARG A:435 , GMH A:1011
BINDING SITE FOR RESIDUE GMH A 1012
09
AC9
SOFTWARE
SER A:407 , GMH A:1011 , GLC A:1018 , GLA A:1019 , GLC A:1020
BINDING SITE FOR RESIDUE GLC A 1017
10
BC1
SOFTWARE
KDO A:1008 , KDO A:1009 , GLC A:1017 , GLC A:1020
BINDING SITE FOR RESIDUE GLC A 1018
11
BC2
SOFTWARE
GLC A:1017 , GLC A:1020
BINDING SITE FOR RESIDUE GLA A 1019
12
BC3
SOFTWARE
KDO A:1009 , GLC A:1017 , GLC A:1018 , GLA A:1019
BINDING SITE FOR RESIDUE GLC A 1020
13
BC4
SOFTWARE
GLU A:304 , LYS A:351 , GLN A:353 , GCN A:1001 , FTT A:1006
BINDING SITE FOR RESIDUE PO4 A 1014
14
BC5
SOFTWARE
SER A:407 , HIS A:408 , HIS A:411 , HIS A:412 , GMH A:1011 , NI A:1021
BINDING SITE FOR RESIDUE PO4 A 1016
15
BC6
SOFTWARE
HIS A:411 , HIS A:412 , PO4 A:1016
BINDING SITE FOR RESIDUE NI A 1021
16
BC7
SOFTWARE
LEU A:457 , VAL A:458 , THR A:459 , GLY A:492 , VAL A:493 , ASN A:494
BINDING SITE FOR RESIDUE NA A 1024
17
BC8
SOFTWARE
ASP A:484 , LYS A:485 , GLN A:486
BINDING SITE FOR RESIDUE MG A 1025
18
BC9
SOFTWARE
GLN A:298 , PHE A:380 , ARG A:382 , PA1 A:1000 , FTT A:1003 , FTT A:1005 , DPO A:1013 , DDQ A:1023
BINDING SITE FOR RESIDUE FTT A 1002
19
CC1
SOFTWARE
PA1 A:1000 , FTT A:1002
BINDING SITE FOR RESIDUE FTT A 1003
20
CC2
SOFTWARE
TYR A:284 , PHE A:355 , ARG A:382 , FTT A:1002 , FTT A:1004
BINDING SITE FOR RESIDUE FTT A 1005
21
CC3
SOFTWARE
PHE A:231 , PHE A:302 , GLU A:304 , GCN A:1001 , FTT A:1004 , FTT A:1007 , PO4 A:1014
BINDING SITE FOR RESIDUE FTT A 1006
22
CC4
SOFTWARE
PRO A:217 , GLU A:304 , FTT A:1006
BINDING SITE FOR RESIDUE FTT A 1007
23
CC5
SOFTWARE
LYS A:439 , LYS A:441 , PA1 A:1000 , FTT A:1002 , HOH A:1191
BINDING SITE FOR RESIDUE DPO A 1013
24
CC6
SOFTWARE
LYS A:260 , KDO A:1009 , GMH A:1010 , GMH A:1011
BINDING SITE FOR RESIDUE DPO A 1015
25
CC7
SOFTWARE
GLY A:99 , GLN A:100 , SER A:101 , PHE A:115 , TYR A:116 , TYR A:244 , TRP A:246 , TYR A:313 , TYR A:315 , LYS A:344 , PHE A:391 , GLY A:392 , TYR A:434 , GLN A:516 , PHE A:704 , TYR A:707 , HOH A:1149
BINDING SITE FOR RESIDUE RIF A 1022
26
CC8
SOFTWARE
GLN A:298 , THR A:359 , PHE A:380 , THR A:443 , FTT A:1002
BINDING SITE FOR RESIDUE DDQ A 1023
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: TONB_DEPENDENT_REC_2 (A:708-725)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TONB_DEPENDENT_REC_2
PS01156
TonB-dependent receptor proteins signature 2.
FHUA_ECOLI
730-747
1
A:708-725
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1fi1a_ (A:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Membrane and cell surface proteins and peptides
(2046)
Fold
:
Transmembrane beta-barrels
(143)
Superfamily
:
Porins
(99)
Family
:
Ligand-gated protein channel
(29)
Protein domain
:
Ferric hydroxamate uptake receptor FhuA
(10)
Escherichia coli [TaxId: 562]
(10)
1a
d1fi1a_
A:
[
close SCOP info
]
CATH Domains
(2, 2)
Info
all CATH domains
1a: CATH_1fi1A02 (A:161-725)
2a: CATH_1fi1A01 (A:19-160)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Maltoporin; Chain A
(39)
Homologous Superfamily
:
[code=2.40.170.20, no name defined]
(28)
Escherichia coli k12. Organism_taxid: 83333. Strain: k-12.
(4)
1a
1fi1A02
A:161-725
Architecture
:
Beta Complex
(381)
Topology
:
Ferric Hydroxamate Uptake Protein; Chain A, domain 1
(37)
Homologous Superfamily
:
Ferric Hydroxamate Uptake Protein; Chain A, domain 1
(36)
Escherichia coli k12. Organism_taxid: 83333. Strain: k-12.
(4)
2a
1fi1A01
A:19-160
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (134 KB)
Header - Asym.Unit
Biol.Unit 1 (126 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
1FI1
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
